Wall clock time and date at job start Wed Apr 1 2020 04:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38259 * 119.99990 * 2 1 4 4 C 1.38215 * 120.00034 * 179.97438 * 3 2 1 5 5 C 1.38251 * 119.99823 * 0.02562 * 4 3 2 6 6 C 1.38213 * 120.00445 * 359.81239 * 5 4 3 7 7 C 1.38214 * 120.00323 * 180.02562 * 2 1 3 8 8 C 1.50706 * 119.99616 * 359.97438 * 7 2 1 9 9 H 1.08999 * 115.55790 * 334.30992 * 8 7 2 10 10 C 1.53074 * 117.49131 * 188.59567 * 8 7 2 11 11 C 1.52994 * 59.98565 * 252.51351 * 10 8 7 12 12 H 1.09006 * 117.49851 * 107.49664 * 11 10 8 13 13 C 1.50697 * 117.50491 * 252.50077 * 11 10 8 14 14 O 1.21283 * 120.00131 * 68.74453 * 13 11 10 15 15 N 1.34779 * 119.99988 * 248.75348 * 13 11 10 16 16 C 1.46496 * 120.00004 * 179.97438 * 15 13 11 17 17 C 1.52997 * 109.47325 * 179.97438 * 16 15 13 18 18 H 1.09003 * 109.50831 * 305.09736 * 17 16 15 19 19 C 1.53295 * 109.51566 * 184.99830 * 17 16 15 20 20 N 1.47151 * 108.38601 * 187.77321 * 19 17 16 21 21 C 1.36940 * 120.98229 * 230.51105 * 20 19 17 22 22 H 1.07999 * 119.99867 * 153.77538 * 21 20 19 23 23 C 1.38814 * 119.99771 * 333.77552 * 21 20 19 24 24 N 1.31618 * 119.99983 * 343.08606 * 23 21 20 25 25 Si 1.86797 * 119.99768 * 163.09399 * 23 21 20 26 26 H 1.48503 * 109.46819 * 269.99643 * 25 23 21 27 27 H 1.48497 * 109.47286 * 29.99616 * 25 23 21 28 28 H 1.48502 * 109.47054 * 149.99887 * 25 23 21 29 29 C 1.47157 * 118.03587 * 50.78253 * 20 19 17 30 30 C 1.53704 * 108.16267 * 309.16190 * 29 20 19 31 31 O 1.42961 * 109.51159 * 65.25077 * 17 16 15 32 32 H 1.08999 * 109.47277 * 269.97874 * 1 2 3 33 33 H 1.09003 * 109.47335 * 29.98038 * 1 2 3 34 34 H 1.09005 * 109.47053 * 149.97580 * 1 2 3 35 35 H 1.08000 * 120.00035 * 359.97438 * 3 2 1 36 36 H 1.07998 * 119.99839 * 180.02562 * 4 3 2 37 37 H 1.08007 * 119.99797 * 180.02562 * 5 4 3 38 38 H 1.07992 * 120.00372 * 180.23268 * 6 5 4 39 39 H 1.09001 * 117.51014 * 145.03368 * 10 8 7 40 40 H 1.09001 * 117.51500 * 359.97438 * 10 8 7 41 41 H 0.96999 * 119.99988 * 359.97438 * 15 13 11 42 42 H 1.09002 * 109.47402 * 59.99355 * 16 15 13 43 43 H 1.09011 * 109.46852 * 299.99574 * 16 15 13 44 44 H 1.08998 * 109.68429 * 68.04779 * 19 17 16 45 45 H 1.09005 * 109.71312 * 307.51439 * 19 17 16 46 46 H 0.96998 * 120.00057 * 180.02562 * 24 23 21 47 47 H 1.09005 * 109.67636 * 68.94280 * 29 20 19 48 48 H 1.08994 * 109.67900 * 189.48972 * 29 20 19 49 49 H 1.09000 * 109.65670 * 292.56892 * 30 29 20 50 50 H 1.08999 * 109.44869 * 172.37213 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2716 0.0001 0.0005 6 6 3.5806 -1.1969 0.0039 7 6 2.1981 -1.1969 -0.0005 8 6 1.4445 -2.5021 -0.0005 9 1 0.4422 -2.4663 0.4261 10 6 2.2541 -3.7854 0.2018 11 6 1.6785 -3.4529 -1.1762 12 1 2.3771 -3.1342 -1.9499 13 6 0.5054 -4.2683 -1.6557 14 8 -0.5737 -4.1554 -1.1137 15 7 0.6554 -5.1233 -2.6867 16 6 -0.4848 -5.9164 -3.1524 17 6 -0.0483 -6.7978 -4.3244 18 1 0.3964 -6.1761 -5.1015 19 6 -1.2666 -7.5345 -4.8927 20 7 -0.7960 -8.5106 -5.8882 21 6 -1.3508 -8.5652 -7.1390 22 1 -0.7734 -8.9429 -7.9698 23 6 -2.6554 -8.1350 -7.3389 24 7 -3.4660 -7.9921 -6.3118 25 14 -3.2605 -7.7591 -9.0657 26 1 -3.0046 -6.3304 -9.3798 27 1 -2.5400 -8.6170 -10.0404 28 1 -4.7180 -8.0310 -9.1496 29 6 0.2842 -9.4306 -5.4979 30 6 1.4306 -8.5980 -4.9019 31 8 0.9111 -7.7554 -3.8703 32 1 -0.3634 -0.0004 1.0276 33 1 -0.3634 0.8902 -0.5135 34 1 -0.3633 -0.8898 -0.5142 35 1 1.6583 2.1327 -0.0004 36 1 4.1204 2.1327 0.0010 37 1 5.3517 0.0001 0.0014 38 1 4.1206 -2.1322 0.0077 39 1 1.7842 -4.5940 0.7617 40 1 3.3314 -3.6856 0.3345 41 1 1.5184 -5.2135 -3.1203 42 1 -1.2830 -5.2492 -3.4776 43 1 -0.8461 -6.5458 -2.3390 44 1 -1.9387 -6.8202 -5.3682 45 1 -1.7905 -8.0527 -4.0895 46 1 -4.3776 -7.6918 -6.4516 47 1 -0.0857 -10.1366 -4.7543 48 1 0.6395 -9.9724 -6.3743 49 1 1.8812 -7.9836 -5.6814 50 1 2.1836 -9.2651 -4.4824 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035546258.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:38 Heat of formation + Delta-G solvation = -31.456653 kcal Electronic energy + Delta-G solvation = -29414.793131 eV Core-core repulsion = 25407.319677 eV Total energy + Delta-G solvation = -4007.473453 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.40459 -40.44086 -39.89102 -37.40105 -36.43810 -35.81876 -33.71736 -33.26770 -32.54916 -31.45034 -29.14942 -27.89273 -27.53992 -25.30293 -24.94822 -24.67667 -23.10711 -22.30548 -21.75067 -21.21889 -20.74776 -18.93856 -18.57837 -17.55822 -17.43434 -17.18215 -16.84521 -16.34202 -16.14146 -15.97610 -15.70718 -15.56008 -15.44464 -15.07026 -14.95335 -14.69260 -14.58704 -14.50167 -13.94894 -13.77972 -13.54667 -13.20901 -13.16463 -13.04985 -13.01268 -12.82255 -12.69581 -12.54345 -12.19444 -12.10322 -12.06416 -11.91283 -11.85016 -11.59340 -11.40942 -11.32441 -11.01262 -10.78133 -10.56749 -10.16132 -9.64663 -9.37276 -8.77302 -7.92841 -5.40758 0.38504 0.51031 1.45409 1.46707 1.47085 1.55809 2.06086 2.46426 2.68104 2.77223 3.09204 3.21694 3.47316 3.54750 3.68739 3.85814 3.94959 4.01333 4.04218 4.05831 4.15720 4.21623 4.25188 4.28395 4.44130 4.46066 4.50864 4.57061 4.66661 4.67105 4.75182 4.76130 4.79689 4.81517 4.94833 4.96560 4.98992 5.05782 5.13656 5.20123 5.21485 5.31489 5.35871 5.50773 5.58561 5.62871 5.65794 5.78117 6.15126 6.24911 6.31293 6.52589 7.03577 7.20337 7.72648 8.26351 9.12843 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016105 B = 0.002045 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.175359 B =13688.894124 C =14430.419502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.094 4.094 3 C -0.130 4.130 4 C -0.125 4.125 5 C -0.129 4.129 6 C -0.120 4.120 7 C -0.067 4.067 8 C -0.089 4.089 9 H 0.106 0.894 10 C -0.126 4.126 11 C -0.176 4.176 12 H 0.146 0.854 13 C 0.536 3.464 14 O -0.587 6.587 15 N -0.705 5.705 16 C 0.143 3.857 17 C 0.078 3.922 18 H 0.065 0.935 19 C 0.158 3.842 20 N -0.614 5.614 21 C -0.265 4.265 22 H 0.075 0.925 23 C -0.052 4.052 24 N -0.936 5.936 25 Si 0.971 3.029 26 H -0.284 1.284 27 H -0.266 1.266 28 H -0.297 1.297 29 C 0.101 3.899 30 C 0.057 3.943 31 O -0.389 6.389 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.055 0.945 35 H 0.135 0.865 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.098 0.902 40 H 0.138 0.862 41 H 0.416 0.584 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.066 0.934 45 H -0.001 1.001 46 H 0.251 0.749 47 H 0.015 0.985 48 H 0.073 0.927 49 H 0.055 0.945 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.059 15.765 12.841 27.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.094 4.094 3 C -0.148 4.148 4 C -0.143 4.143 5 C -0.147 4.147 6 C -0.138 4.138 7 C -0.068 4.068 8 C -0.108 4.108 9 H 0.124 0.876 10 C -0.163 4.163 11 C -0.197 4.197 12 H 0.164 0.836 13 C 0.324 3.676 14 O -0.467 6.467 15 N -0.356 5.356 16 C 0.019 3.981 17 C 0.018 3.982 18 H 0.083 0.917 19 C 0.032 3.968 20 N -0.338 5.338 21 C -0.395 4.395 22 H 0.093 0.907 23 C -0.247 4.247 24 N -0.582 5.582 25 Si 0.799 3.201 26 H -0.210 1.210 27 H -0.190 1.190 28 H -0.224 1.224 29 C -0.024 4.024 30 C -0.020 4.020 31 O -0.308 6.308 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.152 0.848 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.160 0.840 39 H 0.117 0.883 40 H 0.156 0.844 41 H 0.252 0.748 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.017 0.983 46 H 0.060 0.940 47 H 0.033 0.967 48 H 0.091 0.909 49 H 0.074 0.926 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 18.185 15.819 13.362 27.559 hybrid contribution -1.061 -0.243 -1.378 1.756 sum 17.124 15.576 11.984 26.066 Atomic orbital electron populations 1.20840 0.91249 1.02802 1.02642 1.19956 0.96441 0.93090 0.99881 1.21269 0.94984 0.97518 1.00987 1.21469 0.94132 0.99241 0.99459 1.21435 1.01090 0.92104 1.00028 1.21297 0.92930 0.99605 0.99957 1.19049 0.93750 0.92206 1.01746 1.20997 1.00459 0.88957 1.00357 0.87570 1.23270 1.01683 0.97482 0.93852 1.22299 0.99283 1.03245 0.94826 0.83609 1.20224 0.89170 0.79204 0.78982 1.90682 1.29551 1.68299 1.58207 1.45748 1.14144 1.41251 1.34416 1.21070 0.88939 0.92525 0.95610 1.22725 0.91051 0.89742 0.94637 0.91691 1.21091 0.93021 0.92107 0.90605 1.44370 1.41272 1.36401 1.11799 1.19568 0.94570 1.39546 0.85809 0.90716 1.25867 0.95688 1.02286 1.00907 1.70183 1.05700 1.51174 1.31154 0.85214 0.76749 0.78241 0.79939 1.21017 1.19006 1.22355 1.21926 0.89747 0.92447 0.98319 1.23163 0.95103 0.93099 0.90681 1.87802 1.58551 1.49140 1.35350 0.90664 0.90652 0.92616 0.84760 0.84046 0.83784 0.83958 0.88346 0.84443 0.74754 0.91019 0.92320 0.91539 0.98281 0.93958 0.96672 0.90863 0.92646 0.86075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.21 9.33 71.23 0.66 -1.54 16 2 C -0.09 -1.78 5.88 -19.87 -0.12 -1.89 16 3 C -0.13 -2.05 9.70 22.27 0.22 -1.83 16 4 C -0.13 -1.67 10.05 22.27 0.22 -1.44 16 5 C -0.13 -1.65 10.05 22.27 0.22 -1.42 16 6 C -0.12 -1.75 9.30 22.27 0.21 -1.54 16 7 C -0.07 -1.25 5.61 -19.86 -0.11 -1.36 16 8 C -0.09 -1.81 4.66 -11.51 -0.05 -1.86 16 9 H 0.11 2.63 6.43 -2.39 -0.02 2.62 16 10 C -0.13 -2.03 9.57 30.62 0.29 -1.74 16 11 C -0.18 -3.52 5.82 -11.54 -0.07 -3.58 16 12 H 0.15 2.27 8.14 -2.38 -0.02 2.25 16 13 C 0.54 15.43 7.61 87.66 0.67 16.10 16 14 O -0.59 -21.95 16.26 -3.04 -0.05 -22.00 16 15 N -0.70 -19.51 5.51 -463.06 -2.55 -22.06 16 16 C 0.14 4.97 5.34 86.38 0.46 5.43 16 17 C 0.08 2.91 2.81 30.69 0.09 2.99 16 18 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 19 C 0.16 7.69 4.73 86.35 0.41 8.09 16 20 N -0.61 -30.61 3.04 -696.73 -2.12 -32.73 16 21 C -0.27 -14.33 9.65 84.03 0.81 -13.52 16 22 H 0.08 3.87 7.88 -2.91 -0.02 3.85 16 23 C -0.05 -2.88 4.95 84.86 0.42 -2.46 16 24 N -0.94 -55.51 11.14 21.65 0.24 -55.26 16 25 Si 0.97 44.33 29.59 68.60 2.03 46.36 16 26 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 27 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 28 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 29 C 0.10 4.05 6.76 86.49 0.58 4.63 16 30 C 0.06 1.79 7.00 72.22 0.51 2.30 16 31 O -0.39 -13.58 10.33 -148.98 -1.54 -15.12 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 1.19 8.09 -2.39 -0.02 1.17 16 34 H 0.05 1.25 6.65 -2.38 -0.02 1.24 16 35 H 0.13 1.64 8.06 -2.91 -0.02 1.61 16 36 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 37 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16 38 H 0.14 1.42 6.02 -2.91 -0.02 1.40 16 39 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.14 1.37 6.17 -2.39 -0.01 1.36 16 41 H 0.42 9.24 8.47 -92.71 -0.79 8.45 16 42 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 43 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 44 H 0.07 3.60 6.14 -2.39 -0.01 3.59 16 45 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 46 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 47 H 0.02 0.64 8.14 -2.38 -0.02 0.63 16 48 H 0.07 2.73 7.96 -2.39 -0.02 2.72 16 49 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 50 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -71.39 403.73 1.59 -69.80 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.16 Total: 25.66 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 5.42 Total: 5.35 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -4.43 Total: -110.06 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -1.59 Total: -37.12 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -71.39 1.59 -69.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035546258.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.341 kcal (2) G-P(sol) polarization free energy of solvation -71.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds