Wall clock time and date at job start Wed Apr 1 2020 04:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38258 * 119.99599 * 2 1 4 4 C 1.38218 * 119.99741 * 180.02562 * 3 2 1 5 5 C 1.38253 * 120.00142 * 359.95586 * 4 3 2 6 6 C 1.38213 * 120.00002 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99970 * 179.97438 * 6 5 4 8 8 H 1.08998 * 115.54902 * 154.33348 * 7 6 5 9 9 C 1.52991 * 117.51980 * 8.62647 * 7 6 5 10 10 C 1.52995 * 60.00371 * 252.52236 * 9 7 6 11 11 H 1.08999 * 117.52056 * 107.47512 * 10 9 7 12 12 C 1.50700 * 117.49877 * 252.51514 * 10 9 7 13 13 O 1.21278 * 120.00422 * 68.61589 * 12 10 9 14 14 N 1.34782 * 119.99599 * 248.61776 * 12 10 9 15 15 C 1.46503 * 119.99694 * 179.97438 * 14 12 10 16 16 C 1.52993 * 109.47228 * 179.97438 * 15 14 12 17 17 H 1.09001 * 109.55714 * 305.13511 * 16 15 14 18 18 C 1.53298 * 109.51720 * 185.00454 * 16 15 14 19 19 N 1.47151 * 108.38566 * 187.77860 * 18 16 15 20 20 C 1.36941 * 120.97829 * 230.55613 * 19 18 16 21 21 H 1.07997 * 120.00248 * 26.24054 * 20 19 18 22 22 C 1.38807 * 119.99570 * 206.23881 * 20 19 18 23 23 N 1.31618 * 120.00511 * 16.90427 * 22 20 19 24 24 Si 1.86805 * 119.99765 * 196.90261 * 22 20 19 25 25 H 1.48504 * 109.47087 * 60.00557 * 24 22 20 26 26 H 1.48503 * 109.47093 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47271 * 300.00385 * 24 22 20 28 28 C 1.47151 * 118.03926 * 50.53253 * 19 18 16 29 29 C 1.53302 * 108.38342 * 309.46624 * 28 19 18 30 30 O 1.42959 * 109.22317 * 52.29888 * 29 28 19 31 31 C 1.38213 * 120.00142 * 180.22693 * 2 1 3 32 32 H 1.08993 * 109.47306 * 90.00478 * 1 2 3 33 33 H 1.09003 * 109.46915 * 210.00585 * 1 2 3 34 34 H 1.09000 * 109.47529 * 330.00231 * 1 2 3 35 35 H 1.08000 * 120.00129 * 359.97438 * 3 2 1 36 36 H 1.07996 * 119.99665 * 179.97438 * 4 3 2 37 37 H 1.07995 * 120.00072 * 180.02562 * 5 4 3 38 38 H 1.09004 * 117.50234 * 145.02813 * 9 7 6 39 39 H 1.09000 * 117.50080 * 0.02562 * 9 7 6 40 40 H 0.96992 * 120.00371 * 359.97438 * 14 12 10 41 41 H 1.09006 * 109.46877 * 60.00039 * 15 14 12 42 42 H 1.08994 * 109.47719 * 300.00449 * 15 14 12 43 43 H 1.09002 * 109.68090 * 68.04781 * 18 16 15 44 44 H 1.08999 * 109.67774 * 307.49909 * 18 16 15 45 45 H 0.96998 * 120.00466 * 179.97438 * 23 22 20 46 46 H 1.08995 * 109.68147 * 69.18704 * 28 19 18 47 47 H 1.08996 * 109.68041 * 189.70911 * 28 19 18 48 48 H 1.08996 * 109.51191 * 172.22620 * 29 28 19 49 49 H 1.09001 * 109.50900 * 292.32755 * 29 28 19 50 50 H 1.08001 * 120.00163 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0002 -0.0001 6 6 3.5807 -1.1968 0.0002 7 6 4.3343 -2.5019 0.0001 8 1 3.8019 -3.3522 0.4263 9 6 5.8495 -2.4433 0.2030 10 6 5.2747 -2.7744 -1.1756 11 1 5.3483 -2.0098 -1.9489 12 6 5.3940 -4.1980 -1.6556 13 8 4.7576 -5.0763 -1.1131 14 7 6.2081 -4.4950 -2.6879 15 6 6.3245 -5.8790 -3.1542 16 6 7.3044 -5.9411 -4.3276 17 1 6.9881 -5.2448 -5.1043 18 6 7.3327 -7.3643 -4.8964 19 7 8.4120 -7.4444 -5.8933 20 6 8.1800 -7.9509 -7.1443 21 1 7.1886 -7.9051 -7.5701 22 6 9.2192 -8.5230 -7.8650 23 7 10.3260 -8.8835 -7.2507 24 14 9.0468 -8.7816 -9.7070 25 1 8.8273 -7.4721 -10.3723 26 1 10.2863 -9.4041 -10.2377 27 1 7.8902 -9.6733 -9.9756 28 6 9.7479 -6.9636 -5.5066 29 6 9.6020 -5.5598 -4.9080 30 8 8.6140 -5.5888 -3.8752 31 6 2.1981 -1.1969 -0.0047 32 1 -0.3633 -0.0001 -1.0276 33 1 -0.3633 -0.8900 0.5139 34 1 -0.3634 0.8900 0.5138 35 1 1.6582 2.1327 -0.0004 36 1 4.1203 2.1327 -0.0010 37 1 5.3517 0.0002 -0.0001 38 1 6.3142 -3.2549 0.7628 39 1 6.3017 -1.4606 0.3371 40 1 6.7168 -3.7926 -3.1221 41 1 5.3471 -6.2366 -3.4782 42 1 6.6900 -6.5067 -2.3416 43 1 6.3773 -7.5892 -5.3706 44 1 7.5211 -8.0769 -4.0933 45 1 11.0520 -9.2837 -7.7543 46 1 10.1795 -7.6357 -4.7650 47 1 10.3922 -6.9236 -6.3849 48 1 10.5568 -5.2413 -4.4898 49 1 9.2949 -4.8620 -5.6871 50 1 1.6581 -2.1323 -0.0089 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035546601.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:43 Heat of formation + Delta-G solvation = -14.543420 kcal Electronic energy + Delta-G solvation = -28896.892815 eV Core-core repulsion = 24890.152775 eV Total energy + Delta-G solvation = -4006.740041 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.47222 -39.47085 -38.51577 -36.74070 -34.87723 -34.28888 -32.84175 -31.62671 -31.15908 -30.64187 -27.71067 -27.22010 -25.99682 -24.17505 -23.66242 -23.15199 -22.38524 -21.69812 -20.49532 -19.91153 -19.47391 -17.69445 -17.06726 -16.80170 -16.12938 -15.92766 -15.57138 -15.31039 -15.00684 -14.86559 -14.41153 -14.36379 -14.15157 -14.06991 -13.81532 -13.45942 -13.28241 -13.14152 -12.76904 -12.75626 -12.60704 -12.52680 -12.37252 -12.14089 -11.63062 -11.55859 -11.24558 -11.14632 -10.93022 -10.85204 -10.75641 -10.70224 -10.43640 -10.31525 -10.01716 -9.91437 -9.67503 -9.10375 -9.04760 -8.98731 -8.80111 -8.56854 -6.78692 -5.87162 -3.30974 0.97891 1.08442 2.47403 3.08525 3.33169 3.36955 3.39151 3.40069 3.79645 4.18864 4.25081 4.40626 4.44844 4.54539 4.57766 4.65723 4.80243 4.82960 4.95086 5.02225 5.11275 5.13944 5.25691 5.30228 5.35056 5.41663 5.46343 5.49440 5.49776 5.66855 5.71783 5.77497 5.80093 5.83739 5.85316 6.00953 6.12483 6.16858 6.26237 6.28006 6.33925 6.34470 6.45614 6.51713 6.70265 6.72480 7.07191 7.48390 7.55389 7.67545 7.82416 8.24469 8.30407 9.08326 9.70999 10.27775 11.20951 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021283 B = 0.001723 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.290004 B =16246.127075 C =16579.577340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.126 4.126 4 C -0.114 4.114 5 C -0.126 4.126 6 C -0.047 4.047 7 C -0.085 4.085 8 H 0.127 0.873 9 C -0.143 4.143 10 C -0.175 4.175 11 H 0.124 0.876 12 C 0.541 3.459 13 O -0.545 6.545 14 N -0.715 5.715 15 C 0.130 3.870 16 C 0.065 3.935 17 H 0.058 0.942 18 C 0.122 3.878 19 N -0.594 5.594 20 C -0.257 4.257 21 H 0.069 0.931 22 C 0.003 3.997 23 N -0.903 5.903 24 Si 0.906 3.094 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.282 1.282 28 C 0.139 3.861 29 C 0.040 3.960 30 O -0.389 6.389 31 C -0.110 4.110 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.404 0.596 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.030 0.970 45 H 0.256 0.744 46 H 0.028 0.972 47 H 0.094 0.906 48 H 0.081 0.919 49 H 0.041 0.959 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.690 20.584 14.928 28.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.144 4.144 4 C -0.132 4.132 5 C -0.144 4.144 6 C -0.047 4.047 7 C -0.104 4.104 8 H 0.145 0.855 9 C -0.180 4.180 10 C -0.196 4.196 11 H 0.142 0.858 12 C 0.326 3.674 13 O -0.423 6.423 14 N -0.365 5.365 15 C 0.007 3.993 16 C 0.005 3.995 17 H 0.076 0.924 18 C -0.006 4.006 19 N -0.317 5.317 20 C -0.386 4.386 21 H 0.086 0.914 22 C -0.196 4.196 23 N -0.547 5.547 24 Si 0.736 3.264 25 H -0.210 1.210 26 H -0.215 1.215 27 H -0.208 1.208 28 C 0.013 3.987 29 C -0.038 4.038 30 O -0.309 6.309 31 C -0.128 4.128 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.238 0.762 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.048 0.952 45 H 0.066 0.934 46 H 0.046 0.954 47 H 0.112 0.888 48 H 0.100 0.900 49 H 0.059 0.941 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.943 19.855 15.391 28.260 hybrid contribution 0.365 0.071 -1.609 1.652 sum -12.578 19.926 13.781 27.298 Atomic orbital electron populations 1.20804 0.91138 1.02805 1.02457 1.19920 0.96130 0.93052 0.99361 1.21041 0.94325 0.97471 1.01571 1.21103 0.94283 0.97889 0.99881 1.21063 1.00070 0.91911 1.01333 1.19120 0.93304 0.92927 0.99313 1.21076 0.91947 0.96819 1.00538 0.85510 1.23130 0.95340 1.03733 0.95842 1.22338 1.07550 0.96056 0.93695 0.85770 1.19557 0.79033 0.89093 0.79674 1.90692 1.45673 1.48995 1.56975 1.45874 1.45475 1.10825 1.34320 1.21430 0.98665 0.82422 0.96828 1.22804 0.83385 0.99095 0.94197 0.92358 1.21444 0.93768 0.92383 0.92977 1.44056 1.05207 1.71950 1.10518 1.19155 0.96201 1.32755 0.90495 0.91375 1.25049 0.97645 0.98020 0.98892 1.70020 1.06727 1.43472 1.34454 0.86314 0.77037 0.77956 0.85131 1.20981 1.21533 1.20773 1.21448 0.88092 0.89599 0.99514 1.23323 0.90445 1.00075 0.89971 1.87789 1.17630 1.90258 1.35209 1.20900 0.93355 0.97829 1.00703 0.91081 0.91420 0.91569 0.86212 0.86015 0.85831 0.87587 0.87398 0.76172 0.90135 0.90651 0.91772 0.95217 0.93417 0.95363 0.88755 0.90041 0.94115 0.85833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.01 36.01 0.36 -0.32 16 2 C -0.08 -0.69 5.88 -104.62 -0.62 -1.30 16 3 C -0.13 -0.96 9.70 -39.58 -0.38 -1.34 16 4 C -0.11 -0.85 10.05 -39.58 -0.40 -1.25 16 5 C -0.13 -1.02 9.30 -39.59 -0.37 -1.39 16 6 C -0.05 -0.43 5.61 -104.62 -0.59 -1.02 16 7 C -0.09 -0.83 5.55 -91.78 -0.51 -1.34 16 8 H 0.13 1.40 7.67 -51.93 -0.40 1.00 16 9 C -0.14 -1.22 9.56 -26.74 -0.26 -1.48 16 10 C -0.18 -1.75 5.82 -91.77 -0.53 -2.29 16 11 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 12 C 0.54 7.28 7.61 -10.98 -0.08 7.20 16 13 O -0.55 -9.27 16.26 5.56 0.09 -9.18 16 14 N -0.71 -9.34 5.51 -60.29 -0.33 -9.67 16 15 C 0.13 1.96 5.34 -4.04 -0.02 1.94 16 16 C 0.07 1.12 2.81 -26.58 -0.07 1.05 16 17 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 18 C 0.12 2.51 6.02 -3.53 -0.02 2.49 16 19 N -0.59 -14.71 3.05 -171.83 -0.52 -15.23 16 20 C -0.26 -6.93 9.65 -15.06 -0.15 -7.07 16 21 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 22 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 23 N -0.90 -25.78 11.14 55.49 0.62 -25.16 16 24 Si 0.91 21.28 29.59 -169.99 -5.03 16.25 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 C 0.14 3.28 5.45 -3.53 -0.02 3.26 16 29 C 0.04 0.75 6.99 37.31 0.26 1.01 16 30 O -0.39 -7.17 10.33 -35.23 -0.36 -7.54 16 31 C -0.11 -1.00 9.39 -39.58 -0.37 -1.37 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 34 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 35 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 36 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.12 0.80 6.02 -52.49 -0.32 0.49 16 38 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.11 0.70 6.18 -51.93 -0.32 0.38 16 40 H 0.40 4.57 8.47 -40.82 -0.35 4.22 16 41 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.06 1.26 7.96 -51.93 -0.41 0.85 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.09 2.43 6.14 -51.93 -0.32 2.11 16 48 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 49 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 407.29 15.07 6.14 6.14 Total: -1.00 -31.99 407.29 -11.26 -43.25 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -8.00 Total: 4.37 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -3.85 Total: -3.24 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: -0.24 Total: -50.06 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.27 Total: -16.71 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.99 -11.26 -43.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035546601.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.706 kcal (2) G-P(sol) polarization free energy of solvation -31.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds