Wall clock time and date at job start Wed Apr 1 2020 04:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38258 * 119.99599 * 2 1 4 4 C 1.38218 * 119.99741 * 180.02562 * 3 2 1 5 5 C 1.38253 * 120.00142 * 359.95586 * 4 3 2 6 6 C 1.38213 * 120.00002 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99970 * 179.97438 * 6 5 4 8 8 H 1.08998 * 115.54902 * 154.33348 * 7 6 5 9 9 C 1.52991 * 117.51980 * 8.62647 * 7 6 5 10 10 C 1.52995 * 60.00371 * 252.52236 * 9 7 6 11 11 H 1.08999 * 117.52056 * 107.47512 * 10 9 7 12 12 C 1.50700 * 117.49877 * 252.51514 * 10 9 7 13 13 O 1.21278 * 120.00422 * 68.61589 * 12 10 9 14 14 N 1.34782 * 119.99599 * 248.61776 * 12 10 9 15 15 C 1.46503 * 119.99694 * 179.97438 * 14 12 10 16 16 C 1.52993 * 109.47228 * 179.97438 * 15 14 12 17 17 H 1.09001 * 109.55714 * 305.13511 * 16 15 14 18 18 C 1.53298 * 109.51720 * 185.00454 * 16 15 14 19 19 N 1.47151 * 108.38566 * 187.77860 * 18 16 15 20 20 C 1.36941 * 120.97829 * 230.55613 * 19 18 16 21 21 H 1.07997 * 120.00248 * 26.24054 * 20 19 18 22 22 C 1.38807 * 119.99570 * 206.23881 * 20 19 18 23 23 N 1.31618 * 120.00511 * 16.90427 * 22 20 19 24 24 Si 1.86805 * 119.99765 * 196.90261 * 22 20 19 25 25 H 1.48504 * 109.47087 * 60.00557 * 24 22 20 26 26 H 1.48503 * 109.47093 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47271 * 300.00385 * 24 22 20 28 28 C 1.47151 * 118.03926 * 50.53253 * 19 18 16 29 29 C 1.53302 * 108.38342 * 309.46624 * 28 19 18 30 30 O 1.42959 * 109.22317 * 52.29888 * 29 28 19 31 31 C 1.38213 * 120.00142 * 180.22693 * 2 1 3 32 32 H 1.08993 * 109.47306 * 90.00478 * 1 2 3 33 33 H 1.09003 * 109.46915 * 210.00585 * 1 2 3 34 34 H 1.09000 * 109.47529 * 330.00231 * 1 2 3 35 35 H 1.08000 * 120.00129 * 359.97438 * 3 2 1 36 36 H 1.07996 * 119.99665 * 179.97438 * 4 3 2 37 37 H 1.07995 * 120.00072 * 180.02562 * 5 4 3 38 38 H 1.09004 * 117.50234 * 145.02813 * 9 7 6 39 39 H 1.09000 * 117.50080 * 0.02562 * 9 7 6 40 40 H 0.96992 * 120.00371 * 359.97438 * 14 12 10 41 41 H 1.09006 * 109.46877 * 60.00039 * 15 14 12 42 42 H 1.08994 * 109.47719 * 300.00449 * 15 14 12 43 43 H 1.09002 * 109.68090 * 68.04781 * 18 16 15 44 44 H 1.08999 * 109.67774 * 307.49909 * 18 16 15 45 45 H 0.96998 * 120.00466 * 179.97438 * 23 22 20 46 46 H 1.08995 * 109.68147 * 69.18704 * 28 19 18 47 47 H 1.08996 * 109.68041 * 189.70911 * 28 19 18 48 48 H 1.08996 * 109.51191 * 172.22620 * 29 28 19 49 49 H 1.09001 * 109.50900 * 292.32755 * 29 28 19 50 50 H 1.08001 * 120.00163 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0002 -0.0001 6 6 3.5807 -1.1968 0.0002 7 6 4.3343 -2.5019 0.0001 8 1 3.8019 -3.3522 0.4263 9 6 5.8495 -2.4433 0.2030 10 6 5.2747 -2.7744 -1.1756 11 1 5.3483 -2.0098 -1.9489 12 6 5.3940 -4.1980 -1.6556 13 8 4.7576 -5.0763 -1.1131 14 7 6.2081 -4.4950 -2.6879 15 6 6.3245 -5.8790 -3.1542 16 6 7.3044 -5.9411 -4.3276 17 1 6.9881 -5.2448 -5.1043 18 6 7.3327 -7.3643 -4.8964 19 7 8.4120 -7.4444 -5.8933 20 6 8.1800 -7.9509 -7.1443 21 1 7.1886 -7.9051 -7.5701 22 6 9.2192 -8.5230 -7.8650 23 7 10.3260 -8.8835 -7.2507 24 14 9.0468 -8.7816 -9.7070 25 1 8.8273 -7.4721 -10.3723 26 1 10.2863 -9.4041 -10.2377 27 1 7.8902 -9.6733 -9.9756 28 6 9.7479 -6.9636 -5.5066 29 6 9.6020 -5.5598 -4.9080 30 8 8.6140 -5.5888 -3.8752 31 6 2.1981 -1.1969 -0.0047 32 1 -0.3633 -0.0001 -1.0276 33 1 -0.3633 -0.8900 0.5139 34 1 -0.3634 0.8900 0.5138 35 1 1.6582 2.1327 -0.0004 36 1 4.1203 2.1327 -0.0010 37 1 5.3517 0.0002 -0.0001 38 1 6.3142 -3.2549 0.7628 39 1 6.3017 -1.4606 0.3371 40 1 6.7168 -3.7926 -3.1221 41 1 5.3471 -6.2366 -3.4782 42 1 6.6900 -6.5067 -2.3416 43 1 6.3773 -7.5892 -5.3706 44 1 7.5211 -8.0769 -4.0933 45 1 11.0520 -9.2837 -7.7543 46 1 10.1795 -7.6357 -4.7650 47 1 10.3922 -6.9236 -6.3849 48 1 10.5568 -5.2413 -4.4898 49 1 9.2949 -4.8620 -5.6871 50 1 1.6581 -2.1323 -0.0089 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035546601.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:42 Heat of formation + Delta-G solvation = -32.945790 kcal Electronic energy + Delta-G solvation = -28897.690802 eV Core-core repulsion = 24890.152775 eV Total energy + Delta-G solvation = -4007.538027 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.35097 -40.41389 -39.90881 -37.56156 -36.48515 -35.75744 -33.43186 -33.33898 -32.40101 -31.69460 -29.33521 -27.82517 -27.47541 -25.33301 -24.83844 -24.41072 -23.21340 -22.89059 -21.75351 -21.02994 -20.47829 -18.91568 -18.53828 -17.69896 -17.45836 -17.15294 -16.86982 -16.28839 -16.23998 -15.98265 -15.79142 -15.51217 -15.43479 -15.02403 -14.83855 -14.65314 -14.61748 -14.47209 -14.02062 -13.75844 -13.54350 -13.24207 -13.16507 -13.01031 -12.99456 -12.79196 -12.67331 -12.54788 -12.20919 -12.19467 -12.10953 -11.88945 -11.84817 -11.59062 -11.42405 -11.34999 -10.98235 -10.80546 -10.54819 -10.14670 -9.64055 -9.40257 -8.76864 -7.92345 -5.39912 0.37902 0.50152 1.46638 1.46990 1.48383 1.55580 2.06715 2.47326 2.67337 2.76030 3.09071 3.22586 3.46558 3.52114 3.68877 3.85701 3.94766 3.97679 4.03720 4.08346 4.12196 4.22472 4.24805 4.26945 4.47038 4.50754 4.52427 4.55677 4.60243 4.70128 4.73176 4.77344 4.82679 4.85962 4.88706 4.95759 5.02712 5.04313 5.08935 5.18928 5.23030 5.32844 5.36979 5.54219 5.60019 5.60690 5.70471 5.73922 6.14641 6.24131 6.31630 6.52305 7.04905 7.19838 7.72863 8.26455 9.13512 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021283 B = 0.001723 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.290004 B =16246.127075 C =16579.577340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.095 4.095 3 C -0.133 4.133 4 C -0.117 4.117 5 C -0.131 4.131 6 C -0.058 4.058 7 C -0.089 4.089 8 H 0.105 0.895 9 C -0.127 4.127 10 C -0.176 4.176 11 H 0.146 0.854 12 C 0.538 3.462 13 O -0.586 6.586 14 N -0.707 5.707 15 C 0.141 3.859 16 C 0.081 3.919 17 H 0.070 0.930 18 C 0.116 3.884 19 N -0.612 5.612 20 C -0.268 4.268 21 H 0.072 0.928 22 C -0.050 4.050 23 N -0.935 5.935 24 Si 0.972 3.028 25 H -0.275 1.275 26 H -0.294 1.294 27 H -0.276 1.276 28 C 0.142 3.858 29 C 0.054 3.946 30 O -0.389 6.389 31 C -0.131 4.131 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.139 0.861 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.098 0.902 39 H 0.136 0.864 40 H 0.415 0.585 41 H 0.086 0.914 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.017 0.983 45 H 0.252 0.748 46 H -0.002 1.002 47 H 0.068 0.932 48 H 0.110 0.890 49 H 0.052 0.948 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.227 23.590 14.854 30.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.095 4.095 3 C -0.151 4.151 4 C -0.135 4.135 5 C -0.149 4.149 6 C -0.058 4.058 7 C -0.108 4.108 8 H 0.123 0.877 9 C -0.164 4.164 10 C -0.197 4.197 11 H 0.164 0.836 12 C 0.326 3.674 13 O -0.467 6.467 14 N -0.358 5.358 15 C 0.016 3.984 16 C 0.021 3.979 17 H 0.088 0.912 18 C -0.011 4.011 19 N -0.337 5.337 20 C -0.398 4.398 21 H 0.090 0.910 22 C -0.245 4.245 23 N -0.581 5.581 24 Si 0.800 3.200 25 H -0.201 1.201 26 H -0.220 1.220 27 H -0.202 1.202 28 C 0.017 3.983 29 C -0.023 4.023 30 O -0.308 6.308 31 C -0.149 4.149 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.157 0.843 36 H 0.162 0.838 37 H 0.159 0.841 38 H 0.117 0.883 39 H 0.154 0.846 40 H 0.252 0.748 41 H 0.104 0.896 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.035 0.965 45 H 0.061 0.939 46 H 0.016 0.984 47 H 0.086 0.914 48 H 0.127 0.873 49 H 0.070 0.930 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.494 22.898 15.326 30.680 hybrid contribution 0.476 -0.899 -1.521 1.830 sum -13.018 21.999 13.804 29.051 Atomic orbital electron populations 1.20837 0.89934 1.03491 1.02889 1.20192 0.97239 0.92978 0.99074 1.21361 0.94782 0.97997 1.00941 1.21437 0.94461 0.98653 0.98946 1.21283 1.01035 0.91559 1.00994 1.19142 0.93335 0.93029 1.00304 1.20973 0.92699 0.96652 1.00461 0.87678 1.23247 0.94333 1.04815 0.94013 1.22315 1.08555 0.94038 0.94763 0.83597 1.20141 0.78027 0.90228 0.78978 1.90677 1.47242 1.50589 1.58209 1.45761 1.45522 1.10158 1.34316 1.21175 0.98109 0.83608 0.95493 1.22626 0.83386 0.96756 0.95136 0.91197 1.21605 0.92960 0.94531 0.91957 1.44332 1.06317 1.72189 1.10831 1.19517 0.96419 1.32257 0.91616 0.90990 1.25837 0.97477 0.98252 1.02973 1.70182 1.07424 1.44691 1.35810 0.85274 0.76687 0.78030 0.80030 1.20053 1.22013 1.20202 1.21327 0.87295 0.91922 0.97800 1.23160 0.91992 0.96826 0.90356 1.87804 1.17949 1.89915 1.35132 1.21036 0.93790 0.98236 1.01861 0.90703 0.91415 0.90245 0.84307 0.83754 0.84064 0.88322 0.84606 0.74801 0.89613 0.92073 0.91017 0.96534 0.93903 0.98372 0.91364 0.87253 0.93000 0.86432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.01 71.24 0.71 -0.52 16 2 C -0.09 -1.44 5.88 -19.87 -0.12 -1.55 16 3 C -0.13 -1.73 9.70 22.27 0.22 -1.51 16 4 C -0.12 -1.44 10.05 22.27 0.22 -1.22 16 5 C -0.13 -1.80 9.30 22.27 0.21 -1.60 16 6 C -0.06 -1.01 5.61 -19.86 -0.11 -1.12 16 7 C -0.09 -1.68 5.55 -11.54 -0.06 -1.74 16 8 H 0.11 2.42 7.67 -2.39 -0.02 2.41 16 9 C -0.13 -1.91 9.56 30.59 0.29 -1.62 16 10 C -0.18 -3.22 5.82 -11.54 -0.07 -3.29 16 11 H 0.15 2.04 8.14 -2.39 -0.02 2.02 16 12 C 0.54 14.03 7.61 87.66 0.67 14.70 16 13 O -0.59 -20.11 16.26 -3.02 -0.05 -20.16 16 14 N -0.71 -17.32 5.51 -463.06 -2.55 -19.87 16 15 C 0.14 4.10 5.34 86.38 0.46 4.56 16 16 C 0.08 2.66 2.81 30.69 0.09 2.75 16 17 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 18 C 0.12 4.78 6.02 86.35 0.52 5.30 16 19 N -0.61 -30.57 3.05 -697.54 -2.13 -32.70 16 20 C -0.27 -14.53 9.65 84.03 0.81 -13.72 16 21 H 0.07 3.75 7.88 -2.91 -0.02 3.73 16 22 C -0.05 -2.74 4.95 84.86 0.42 -2.32 16 23 N -0.94 -54.69 11.14 21.65 0.24 -54.45 16 24 Si 0.97 43.94 29.59 68.60 2.03 45.97 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 26 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 27 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 28 C 0.14 6.79 5.45 86.36 0.47 7.26 16 29 C 0.05 1.96 6.99 72.08 0.50 2.47 16 30 O -0.39 -13.63 10.33 -148.98 -1.54 -15.17 16 31 C -0.13 -2.36 9.39 22.27 0.21 -2.15 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.07 0.71 8.09 -2.39 -0.02 0.69 16 34 H 0.08 0.62 8.09 -2.39 -0.02 0.60 16 35 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 36 H 0.14 1.06 8.06 -2.91 -0.02 1.04 16 37 H 0.14 1.34 6.02 -2.91 -0.02 1.32 16 38 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.14 1.28 6.18 -2.39 -0.01 1.26 16 40 H 0.42 8.31 8.47 -92.71 -0.79 7.53 16 41 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.07 2.80 7.96 -2.39 -0.02 2.78 16 44 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.25 14.27 8.31 -92.71 -0.77 13.49 16 46 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 47 H 0.07 3.60 6.14 -2.39 -0.01 3.59 16 48 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 49 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 50 H 0.12 2.11 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -70.29 407.29 1.60 -68.69 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.15 Total: 23.01 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 5.44 Total: 4.67 kcal Atomic # 7 Polarization: -102.58 SS G_CDS: -4.44 Total: -107.01 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -1.59 Total: -35.33 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -70.29 1.60 -68.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035546601.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.746 kcal (2) G-P(sol) polarization free energy of solvation -70.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds