Wall clock time and date at job start Wed Apr 1 2020 04:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38257 * 119.99977 * 2 1 4 4 C 1.38216 * 119.99656 * 180.25270 * 3 2 1 5 5 C 1.38260 * 120.00075 * 359.49231 * 4 3 2 6 6 C 1.38211 * 120.00174 * 0.25863 * 5 4 3 7 7 C 1.38215 * 119.99784 * 179.76912 * 2 1 3 8 8 C 1.50693 * 120.00254 * 0.02562 * 7 2 1 9 9 H 1.09004 * 115.54976 * 334.44139 * 8 7 2 10 10 C 1.52996 * 117.49927 * 188.77033 * 8 7 2 11 11 C 1.53000 * 117.50275 * 120.11070 * 8 7 2 12 12 H 1.09003 * 117.49726 * 359.97438 * 11 8 7 13 13 C 1.50702 * 117.50151 * 214.98146 * 11 8 7 14 14 O 1.21285 * 119.99546 * 359.97438 * 13 11 8 15 15 N 1.34769 * 119.99850 * 179.97438 * 13 11 8 16 16 C 1.46493 * 120.00358 * 359.97438 * 15 13 11 17 17 C 1.46508 * 119.99720 * 180.02562 * 15 13 11 18 18 H 1.08999 * 110.88396 * 357.56222 * 17 15 13 19 19 C 1.54904 * 111.00703 * 121.45148 * 17 15 13 20 20 N 1.47423 * 104.83228 * 155.08134 * 19 17 15 21 21 C 1.36936 * 125.64996 * 155.83862 * 20 19 17 22 22 H 1.07999 * 119.99821 * 353.88594 * 21 20 19 23 23 C 1.38818 * 120.00261 * 173.89463 * 21 20 19 24 24 N 1.31619 * 119.99748 * 6.82148 * 23 21 20 25 25 Si 1.86797 * 120.00050 * 186.82520 * 23 21 20 26 26 H 1.48507 * 109.47008 * 94.98049 * 25 23 21 27 27 H 1.48496 * 109.47102 * 214.97982 * 25 23 21 28 28 H 1.48497 * 109.47192 * 334.98268 * 25 23 21 29 29 C 1.47029 * 108.70247 * 335.87075 * 20 19 17 30 30 C 1.54320 * 107.27269 * 1.06052 * 29 20 19 31 31 H 1.09001 * 110.71817 * 263.82951 * 30 29 20 32 32 O 1.42891 * 110.72199 * 140.55545 * 30 29 20 33 33 H 1.08994 * 109.47305 * 270.23066 * 1 2 3 34 34 H 1.09003 * 109.47156 * 30.23576 * 1 2 3 35 35 H 1.09004 * 109.47509 * 150.23144 * 1 2 3 36 36 H 1.07995 * 120.00148 * 0.02562 * 3 2 1 37 37 H 1.08004 * 120.00048 * 179.76475 * 4 3 2 38 38 H 1.08003 * 119.99908 * 180.27655 * 5 4 3 39 39 H 1.07994 * 119.99807 * 180.02562 * 6 5 4 40 40 H 1.08998 * 117.50390 * 359.97438 * 10 8 7 41 41 H 1.09008 * 117.50124 * 144.99487 * 10 8 7 42 42 H 1.09000 * 109.47000 * 90.00590 * 16 15 13 43 43 H 1.09002 * 109.47578 * 209.99979 * 16 15 13 44 44 H 1.08999 * 109.47277 * 330.00267 * 16 15 13 45 45 H 1.08997 * 110.36621 * 273.91996 * 19 17 15 46 46 H 1.09004 * 110.36531 * 36.13591 * 19 17 15 47 47 H 0.97000 * 119.99810 * 180.02562 * 24 23 21 48 48 H 1.09003 * 109.87857 * 120.48092 * 29 20 19 49 49 H 1.09005 * 109.87995 * 241.48699 * 29 20 19 50 50 H 0.96701 * 114.00073 * 66.47762 * 32 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0053 5 6 4.2717 -0.0001 0.0000 6 6 3.5806 -1.1970 0.0053 7 6 2.1980 -1.1970 0.0048 8 6 1.4445 -2.5020 0.0095 9 1 0.4410 -2.4640 0.4333 10 6 2.2528 -3.7836 0.2216 11 6 1.6813 -3.4588 -1.1607 12 1 2.3818 -3.1441 -1.9343 13 6 0.5094 -4.2767 -1.6390 14 8 -0.5705 -4.1624 -1.0989 15 7 0.6615 -5.1351 -2.6668 16 6 1.9657 -5.2727 -3.3195 17 6 -0.4780 -5.9299 -3.1321 18 1 -1.3590 -5.7424 -2.5182 19 6 -0.7740 -5.6538 -4.6273 20 7 -1.4548 -6.8698 -5.1080 21 6 -2.3024 -6.9386 -6.1813 22 1 -2.5982 -6.0355 -6.6944 23 6 -2.7816 -8.1690 -6.6097 24 7 -2.5315 -9.2534 -5.9070 25 14 -3.7811 -8.2855 -8.1835 26 1 -2.8852 -8.6388 -9.3139 27 1 -4.8230 -9.3326 -8.0317 28 1 -4.4296 -6.9777 -8.4560 29 6 -1.0736 -7.9965 -4.2436 30 6 -0.1283 -7.4414 -3.1575 31 1 0.9137 -7.5914 -3.4399 32 8 -0.4026 -8.0452 -1.8918 33 1 -0.3633 0.0041 1.0276 34 1 -0.3634 0.8879 -0.5175 35 1 -0.3634 -0.8921 -0.5102 36 1 1.6583 2.1326 0.0004 37 1 4.1205 2.1326 -0.0091 38 1 5.3517 -0.0001 0.0004 39 1 4.1206 -2.1322 0.0098 40 1 3.3296 -3.6830 0.3574 41 1 1.7810 -4.5888 0.7850 42 1 2.5409 -6.0530 -2.8210 43 1 1.8218 -5.5401 -4.3663 44 1 2.5050 -4.3275 -3.2567 45 1 -1.4270 -4.7873 -4.7310 46 1 0.1551 -5.4956 -5.1750 47 1 -2.8660 -10.1133 -6.2066 48 1 -1.9620 -8.4241 -3.7787 49 1 -0.5603 -8.7575 -4.8315 50 1 -0.2011 -8.9902 -1.8549 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047561396.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:26 Heat of formation + Delta-G solvation = -19.289443 kcal Electronic energy + Delta-G solvation = -30207.450419 eV Core-core repulsion = 26200.504576 eV Total energy + Delta-G solvation = -4006.945844 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.61763 -40.55551 -39.49257 -37.28974 -36.74480 -36.32262 -33.86880 -33.69129 -31.53185 -30.46997 -29.12621 -27.87212 -27.74966 -26.65067 -25.12532 -24.73963 -22.34144 -22.28949 -21.78439 -21.01615 -19.97385 -19.04439 -18.90615 -18.05556 -17.50363 -17.28859 -16.69874 -16.32902 -16.24487 -15.85369 -15.68993 -15.51777 -15.03711 -14.75213 -14.65582 -14.54225 -14.27679 -14.01283 -13.93364 -13.73113 -13.60574 -13.20207 -13.18462 -13.10162 -13.06404 -12.97212 -12.81166 -12.75044 -12.67522 -12.08759 -12.03675 -11.90705 -11.84068 -11.61391 -11.54418 -11.38257 -11.07104 -10.81241 -10.76592 -9.72226 -9.63156 -9.35945 -8.97396 -7.91544 -5.28802 0.39632 0.52415 1.43992 1.45637 1.46855 1.56030 1.83151 2.45967 2.67911 3.08239 3.10028 3.29634 3.42040 3.55801 3.66147 3.79562 3.82863 3.93068 4.02095 4.03906 4.06633 4.11949 4.22434 4.25518 4.30541 4.41958 4.46599 4.51117 4.62678 4.67653 4.75145 4.75948 4.77454 4.80327 4.90168 4.95194 4.99724 5.05686 5.14341 5.21143 5.31976 5.36957 5.38931 5.48896 5.62697 5.64091 5.67122 5.79507 6.10368 6.16391 6.37752 6.82903 7.01229 7.12380 7.66164 8.29574 9.18682 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019469 B = 0.002266 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.826335 B =12351.266467 C =12920.788975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.094 4.094 3 C -0.129 4.129 4 C -0.125 4.125 5 C -0.127 4.127 6 C -0.119 4.119 7 C -0.066 4.066 8 C -0.091 4.091 9 H 0.101 0.899 10 C -0.123 4.123 11 C -0.172 4.172 12 H 0.152 0.848 13 C 0.536 3.464 14 O -0.589 6.589 15 N -0.594 5.594 16 C 0.065 3.935 17 C 0.145 3.855 18 H 0.073 0.927 19 C 0.134 3.866 20 N -0.621 5.621 21 C -0.248 4.248 22 H 0.084 0.916 23 C -0.061 4.061 24 N -0.948 5.948 25 Si 0.982 3.018 26 H -0.281 1.281 27 H -0.295 1.295 28 H -0.270 1.270 29 C 0.163 3.837 30 C 0.087 3.913 31 H 0.089 0.911 32 O -0.572 6.572 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.134 0.866 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.104 0.896 45 H 0.037 0.963 46 H 0.054 0.946 47 H 0.250 0.750 48 H 0.012 0.988 49 H 0.030 0.970 50 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.556 16.800 12.301 28.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.143 4.143 5 C -0.145 4.145 6 C -0.136 4.136 7 C -0.066 4.066 8 C -0.110 4.110 9 H 0.119 0.881 10 C -0.159 4.159 11 C -0.193 4.193 12 H 0.170 0.830 13 C 0.326 3.674 14 O -0.469 6.469 15 N -0.325 5.325 16 C -0.076 4.076 17 C 0.039 3.961 18 H 0.092 0.908 19 C 0.007 3.993 20 N -0.349 5.349 21 C -0.377 4.377 22 H 0.101 0.899 23 C -0.255 4.255 24 N -0.596 5.596 25 Si 0.810 3.190 26 H -0.208 1.208 27 H -0.222 1.222 28 H -0.194 1.194 29 C 0.037 3.963 30 C 0.026 3.974 31 H 0.107 0.893 32 O -0.379 6.379 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.152 0.848 37 H 0.160 0.840 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.160 0.840 41 H 0.112 0.888 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.122 0.878 45 H 0.056 0.944 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.031 0.969 49 H 0.048 0.952 50 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 18.708 17.307 12.604 28.433 hybrid contribution -1.232 -1.192 -1.072 2.022 sum 17.476 16.115 11.533 26.422 Atomic orbital electron populations 1.20832 0.91477 1.02690 1.02545 1.19938 0.96295 0.93184 0.99996 1.21254 0.95035 0.97422 1.01011 1.21472 0.94049 0.99305 0.99435 1.21440 1.01116 0.92028 0.99919 1.21293 0.92754 0.99682 0.99888 1.19024 0.93816 0.91997 1.01787 1.20979 1.00337 0.89089 1.00562 0.88064 1.23251 1.01782 0.97343 0.93571 1.22356 0.99126 1.03007 0.94810 0.83009 1.20358 0.89238 0.79098 0.78716 1.90670 1.29917 1.68249 1.58101 1.47675 1.11452 1.40095 1.33266 1.22178 0.82337 1.04469 0.98595 1.21872 0.89604 0.89354 0.95242 0.90835 1.21879 0.96446 0.89790 0.91157 1.44513 1.53007 1.04631 1.32709 1.19450 1.20499 0.93483 1.04235 0.89853 1.25705 1.02395 0.95160 1.02233 1.70157 1.51254 0.98516 1.39683 0.85015 0.77575 0.77402 0.79051 1.20792 1.22157 1.19422 1.21612 0.95053 0.89859 0.89773 1.23281 0.98254 0.92204 0.83625 0.89325 1.86463 1.90042 1.28822 1.32559 0.90784 0.90632 0.92863 0.84837 0.84019 0.83644 0.83774 0.84013 0.88818 0.90631 0.90510 0.87779 0.94431 0.92895 0.94114 0.96942 0.95228 0.75754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 9.33 71.23 0.66 -1.68 16 2 C -0.09 -1.84 5.88 -19.87 -0.12 -1.95 16 3 C -0.13 -2.07 9.70 22.27 0.22 -1.85 16 4 C -0.12 -1.65 10.05 22.27 0.22 -1.42 16 5 C -0.13 -1.58 10.05 22.27 0.22 -1.36 16 6 C -0.12 -1.68 9.30 22.27 0.21 -1.48 16 7 C -0.07 -1.25 5.61 -19.87 -0.11 -1.36 16 8 C -0.09 -1.95 4.66 -11.54 -0.05 -2.00 16 9 H 0.10 2.72 6.42 -2.38 -0.02 2.70 16 10 C -0.12 -2.08 9.57 30.62 0.29 -1.79 16 11 C -0.17 -3.63 4.92 -11.52 -0.06 -3.69 16 12 H 0.15 2.36 6.44 -2.39 -0.02 2.34 16 13 C 0.54 16.97 7.46 87.66 0.65 17.62 16 14 O -0.59 -24.46 15.64 -3.05 -0.05 -24.50 16 15 N -0.59 -18.03 2.91 -814.83 -2.37 -20.40 16 16 C 0.07 1.30 8.95 127.77 1.14 2.44 16 17 C 0.14 5.71 3.18 46.38 0.15 5.86 16 18 H 0.07 3.53 7.01 -2.39 -0.02 3.51 16 19 C 0.13 5.65 6.80 86.85 0.59 6.24 16 20 N -0.62 -32.45 3.39 -691.98 -2.35 -34.79 16 21 C -0.25 -14.05 10.26 84.03 0.86 -13.19 16 22 H 0.08 4.53 7.84 -2.91 -0.02 4.51 16 23 C -0.06 -3.50 5.48 84.86 0.47 -3.04 16 24 N -0.95 -56.68 10.36 21.65 0.22 -56.45 16 25 Si 0.98 45.72 29.56 68.60 2.03 47.75 16 26 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 27 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 28 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 29 C 0.16 8.09 5.16 86.73 0.45 8.54 16 30 C 0.09 3.33 3.89 31.78 0.12 3.46 16 31 H 0.09 2.86 7.06 -2.39 -0.02 2.85 16 32 O -0.57 -21.24 13.39 -148.98 -1.99 -23.23 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 1.27 8.09 -2.39 -0.02 1.25 16 35 H 0.05 1.29 6.65 -2.39 -0.02 1.27 16 36 H 0.13 1.68 8.06 -2.91 -0.02 1.65 16 37 H 0.14 1.18 8.06 -2.91 -0.02 1.15 16 38 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 39 H 0.14 1.34 6.03 -2.91 -0.02 1.32 16 40 H 0.14 1.40 6.18 -2.39 -0.01 1.38 16 41 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.08 1.26 8.08 -2.39 -0.02 1.24 16 43 H 0.08 1.61 6.30 -2.39 -0.02 1.59 16 44 H 0.10 1.39 5.99 -2.39 -0.01 1.38 16 45 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.05 1.99 6.27 -2.38 -0.01 1.98 16 47 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 48 H 0.01 0.71 7.46 -2.39 -0.02 0.69 16 49 H 0.03 1.58 7.36 -2.38 -0.02 1.56 16 50 H 0.39 10.99 9.12 -74.06 -0.68 10.31 16 Total: -1.00 -78.22 396.02 1.71 -76.51 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: 0.29 Total: 25.78 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 5.92 Total: 9.35 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -4.50 Total: -111.65 kcal Atomic # 8 Polarization: -45.70 SS G_CDS: -2.04 Total: -47.74 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -78.22 1.71 -76.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047561396.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.220 kcal (2) G-P(sol) polarization free energy of solvation -78.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds