Wall clock time and date at job start Wed Apr 1 2020 02:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38751 * 120.05870 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94246 * 180.02562 * 4 3 2 6 6 C 1.38282 * 120.05845 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.94632 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47607 * 265.00503 * 7 6 5 9 9 O 1.21280 * 119.99791 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00267 * 179.97438 * 8 7 6 11 11 C 1.46667 * 125.33771 * 179.97438 * 10 8 7 12 12 C 1.53722 * 107.94329 * 180.52009 * 11 10 8 13 13 H 1.08999 * 112.56132 * 139.71849 * 12 11 10 14 14 C 1.53691 * 109.34428 * 266.25702 * 12 11 10 15 15 N 1.47168 * 107.73349 * 128.69347 * 14 12 11 16 16 C 1.36942 * 125.25225 * 180.36095 * 15 14 12 17 17 H 1.08001 * 119.99618 * 179.18021 * 16 15 14 18 18 C 1.38809 * 120.00309 * 359.18203 * 16 15 14 19 19 N 1.31621 * 119.99518 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00160 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47304 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47016 * 119.99889 * 20 18 16 23 23 H 1.48500 * 109.47092 * 239.99623 * 20 18 16 24 24 C 1.46739 * 109.41489 * 359.65316 * 15 14 12 25 25 C 1.53927 * 106.72082 * 342.40530 * 24 15 14 26 26 H 1.09001 * 113.01519 * 150.83040 * 25 24 15 27 27 C 1.46781 * 125.33747 * 359.69357 * 10 8 7 28 28 C 1.38245 * 120.10978 * 0.02562 * 6 5 4 29 29 C 1.50703 * 119.97060 * 179.97438 * 28 6 5 30 30 C 1.38164 * 120.05768 * 359.67104 * 28 6 5 31 31 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 32 32 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 34 34 H 1.07994 * 120.02725 * 359.97438 * 4 3 2 35 35 H 1.08007 * 119.96925 * 180.02562 * 5 4 3 36 36 H 1.08996 * 109.46948 * 25.00386 * 7 6 5 37 37 H 1.09006 * 109.47323 * 145.00277 * 7 6 5 38 38 H 1.08991 * 109.77421 * 300.14421 * 11 10 8 39 39 H 1.09000 * 109.77166 * 60.90266 * 11 10 8 40 40 H 1.09002 * 109.76150 * 247.19316 * 14 12 11 41 41 H 1.08996 * 109.76091 * 7.91095 * 14 12 11 42 42 H 0.96999 * 119.99884 * 179.97438 * 19 18 16 43 43 H 1.09000 * 110.00910 * 223.09284 * 24 15 14 44 44 H 1.09005 * 110.01405 * 101.72132 * 24 15 14 45 45 H 1.08996 * 110.02332 * 280.79610 * 27 10 8 46 46 H 1.08999 * 110.02712 * 42.21019 * 27 10 8 47 47 H 1.08998 * 109.47510 * 89.99524 * 29 28 6 48 48 H 1.09001 * 109.47060 * 209.99519 * 29 28 6 49 49 H 1.09004 * 109.47151 * 329.99244 * 29 28 6 50 50 H 1.07998 * 120.03046 * 180.30014 * 30 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3018 3.6759 -0.0016 7 6 3.9860 5.0186 -0.0028 8 6 4.3227 5.4097 -1.4186 9 8 4.0358 4.6706 -2.3364 10 7 4.9426 6.5808 -1.6650 11 6 5.3242 7.0759 -2.9918 12 6 6.0140 8.4375 -2.8088 13 1 6.8757 8.5612 -3.4648 14 6 4.9748 9.5594 -2.9619 15 7 5.0934 10.4431 -1.7911 16 6 4.3296 11.5561 -1.5603 17 1 4.4805 12.1379 -0.6630 18 6 3.3616 11.9364 -2.4796 19 7 3.1781 11.2276 -3.5733 20 14 2.3194 13.4542 -2.1644 21 1 2.7191 14.0700 -0.8735 22 1 2.5231 14.4316 -3.2637 23 1 0.8868 13.0674 -2.1051 24 6 6.1452 9.9365 -0.9021 25 6 6.3959 8.4715 -1.3026 26 1 7.4183 8.1461 -1.1105 27 6 5.3365 7.5632 -0.6481 28 6 4.0559 2.5172 -0.0032 29 6 5.5607 2.5983 -0.0055 30 6 3.4311 1.2849 0.0036 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 0.2128 2.3204 0.0005 35 1 1.3339 4.5114 0.0008 36 1 3.3216 5.7652 0.4321 37 1 4.9017 4.9603 0.5856 38 1 6.0122 6.3744 -3.4633 39 1 4.4350 7.1934 -3.6113 40 1 5.1846 10.1356 -3.8630 41 1 3.9750 9.1297 -3.0237 42 1 2.5014 11.4931 -4.2155 43 1 5.8138 9.9881 0.1350 44 1 7.0567 10.5199 -1.0323 45 1 4.4718 8.1532 -0.3445 46 1 5.7642 7.0550 0.2160 47 1 5.9252 2.6176 1.0215 48 1 5.9706 1.7293 -0.5203 49 1 5.8748 3.5067 -0.5197 50 1 4.0206 0.3800 0.0073 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048839792.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:41 Heat of formation + Delta-G solvation = -18.424172 kcal Electronic energy + Delta-G solvation = -30355.194921 eV Core-core repulsion = 26348.286599 eV Total energy + Delta-G solvation = -4006.908323 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.58401 -39.96073 -38.55526 -37.46920 -34.88271 -32.81092 -32.43620 -32.09981 -30.40061 -29.42904 -28.71711 -26.77895 -26.68212 -25.49651 -25.20455 -23.02244 -22.23182 -20.90550 -20.12855 -19.30993 -19.02420 -17.87145 -17.11328 -16.73948 -16.65229 -15.95573 -15.84357 -15.63678 -14.99930 -14.59180 -14.45763 -14.23261 -13.89972 -13.76359 -13.57116 -13.38461 -13.15513 -12.95532 -12.68264 -12.36488 -12.33591 -12.13790 -12.08177 -11.96788 -11.79841 -11.49509 -11.47352 -11.41553 -11.01447 -10.90474 -10.87651 -10.85709 -10.42091 -10.12117 -10.08294 -9.86970 -9.66926 -9.59075 -8.84377 -8.64085 -8.28700 -8.14476 -6.87084 -5.75579 -3.09524 1.26155 1.33724 2.86899 3.08853 3.24758 3.37041 3.42544 3.45217 3.70928 4.46191 4.62277 4.64039 4.69544 4.78717 4.85044 4.87470 4.91010 5.08648 5.11378 5.17822 5.20871 5.23363 5.26520 5.41674 5.47651 5.50684 5.54849 5.57942 5.64166 5.67305 5.70642 5.82047 5.87154 5.96875 6.02498 6.16946 6.20337 6.28103 6.29886 6.38030 6.53400 6.55962 6.57744 6.63927 6.68185 6.79370 7.25949 7.53554 7.55314 7.78578 7.81775 8.22230 8.42345 9.17760 9.78840 10.42328 11.35891 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015468 B = 0.002480 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.728654 B =11288.513528 C =12340.616288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.126 3.874 4 C -0.212 4.212 5 C -0.062 4.062 6 C -0.098 4.098 7 C -0.095 4.095 8 C 0.527 3.473 9 O -0.538 6.538 10 N -0.609 5.609 11 C 0.121 3.879 12 C -0.123 4.123 13 H 0.090 0.910 14 C 0.185 3.815 15 N -0.604 5.604 16 C -0.230 4.230 17 H 0.079 0.921 18 C -0.007 4.007 19 N -0.920 5.920 20 Si 0.911 3.089 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.147 3.853 25 C -0.111 4.111 26 H 0.089 0.911 27 C 0.111 3.889 28 C -0.030 4.030 29 C -0.116 4.116 30 C -0.153 4.153 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.046 0.954 41 H 0.050 0.950 42 H 0.252 0.748 43 H 0.037 0.963 44 H 0.021 0.979 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.073 0.927 48 H 0.069 0.931 49 H 0.068 0.932 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.871 -18.700 9.563 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.081 3.919 4 C -0.230 4.230 5 C -0.080 4.080 6 C -0.098 4.098 7 C -0.135 4.135 8 C 0.315 3.685 9 O -0.416 6.416 10 N -0.343 5.343 11 C -0.001 4.001 12 C -0.143 4.143 13 H 0.108 0.892 14 C 0.061 3.939 15 N -0.330 5.330 16 C -0.358 4.358 17 H 0.097 0.903 18 C -0.204 4.204 19 N -0.567 5.567 20 Si 0.742 3.258 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.218 1.218 24 C 0.020 3.980 25 C -0.131 4.131 26 H 0.107 0.893 27 C -0.012 4.012 28 C -0.030 4.030 29 C -0.173 4.173 30 C -0.171 4.171 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.073 0.927 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.039 0.961 45 H 0.097 0.903 46 H 0.083 0.917 47 H 0.092 0.908 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.583 -19.235 8.974 21.284 hybrid contribution -0.982 1.078 0.024 1.459 sum 0.601 -18.157 8.998 20.273 Atomic orbital electron populations 1.23033 0.78527 1.03724 1.01447 1.86043 1.21295 1.27146 1.88918 1.18962 0.92266 0.83994 0.96667 1.21125 0.99844 0.92236 1.09817 1.20794 0.93748 0.97214 0.96259 1.19068 0.93254 0.93336 1.04182 1.20607 1.02338 0.95538 0.95011 1.20106 0.77441 0.79900 0.91068 1.90707 1.53227 1.51165 1.46454 1.48299 1.58451 1.18564 1.08973 1.21795 0.99446 0.94471 0.84426 1.23157 0.99771 0.95551 0.95833 0.89173 1.21206 0.94248 0.87749 0.90746 1.44361 1.39419 1.28456 1.20792 1.19075 1.11633 1.00632 1.04459 0.90330 1.24808 0.99506 0.99198 0.96870 1.69967 1.35996 1.39699 1.11084 0.86054 0.80076 0.82310 0.77362 1.20499 1.21738 1.21797 1.21140 0.92457 0.89988 0.94425 1.22925 0.97625 0.96696 0.95813 0.89320 1.22113 0.98479 0.89952 0.90625 1.19450 0.95882 0.91573 0.96076 1.20837 0.90937 1.03311 1.02186 1.20169 0.91234 0.97862 1.07880 0.92607 0.88400 0.92693 0.85595 0.85721 0.88090 0.88147 0.92436 0.91019 0.93560 0.93198 0.93744 0.94518 0.96148 0.90347 0.91662 0.90825 0.91239 0.91274 0.85377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.63 10.50 -19.44 -0.20 -3.84 16 3 C 0.13 1.57 6.69 -39.22 -0.26 1.30 16 4 C -0.21 -2.52 9.04 -39.43 -0.36 -2.88 16 5 C -0.06 -0.79 9.67 -39.61 -0.38 -1.17 16 6 C -0.10 -1.28 4.37 -104.60 -0.46 -1.74 16 7 C -0.10 -1.18 4.18 -29.04 -0.12 -1.30 16 8 C 0.53 8.50 7.05 -10.99 -0.08 8.42 16 9 O -0.54 -10.60 16.34 5.56 0.09 -10.51 16 10 N -0.61 -9.82 3.31 -172.19 -0.57 -10.39 16 11 C 0.12 2.08 6.23 -3.58 -0.02 2.06 16 12 C -0.12 -2.16 4.01 -88.60 -0.36 -2.51 16 13 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 14 C 0.19 4.28 4.77 -3.32 -0.02 4.26 16 15 N -0.60 -14.53 3.39 -171.51 -0.58 -15.11 16 16 C -0.23 -6.15 10.25 -15.06 -0.15 -6.31 16 17 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 18 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 19 N -0.92 -26.54 10.24 55.49 0.57 -25.97 16 20 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 C 0.15 2.75 6.41 -3.43 -0.02 2.72 16 25 C -0.11 -1.71 4.14 -88.26 -0.37 -2.07 16 26 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 27 C 0.11 1.63 5.88 -3.30 -0.02 1.61 16 28 C -0.03 -0.37 5.88 -104.64 -0.62 -0.98 16 29 C -0.12 -1.18 9.21 36.01 0.33 -0.85 16 30 C -0.15 -1.88 9.64 -39.43 -0.38 -2.26 16 31 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 34 H 0.13 1.21 6.30 -52.49 -0.33 0.88 16 35 H 0.12 1.44 8.06 -52.48 -0.42 1.01 16 36 H 0.10 1.14 8.05 -51.93 -0.42 0.72 16 37 H 0.10 1.00 6.72 -51.93 -0.35 0.65 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.07 1.39 7.44 -51.93 -0.39 1.00 16 40 H 0.05 1.21 7.40 -51.93 -0.38 0.82 16 41 H 0.05 1.31 6.58 -51.93 -0.34 0.97 16 42 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 43 H 0.04 0.66 7.97 -51.93 -0.41 0.24 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 1.33 7.76 -51.93 -0.40 0.93 16 46 H 0.07 0.74 7.61 -51.93 -0.40 0.34 16 47 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 49 H 0.07 0.77 6.15 -51.93 -0.32 0.45 16 50 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 393.86 15.07 5.94 5.94 Total: -1.00 -33.23 393.86 -10.05 -43.27 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -7.88 Total: 0.70 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -2.38 Total: -0.79 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.58 Total: -51.47 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.11 Total: -14.35 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.23 -10.05 -43.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048839792.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.851 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds