Wall clock time and date at job start Wed Apr 1 2020 02:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38751 * 120.05870 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94246 * 180.02562 * 4 3 2 6 6 C 1.38282 * 120.05845 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.94632 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47607 * 265.00503 * 7 6 5 9 9 O 1.21280 * 119.99791 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00267 * 179.97438 * 8 7 6 11 11 C 1.46667 * 125.33771 * 179.97438 * 10 8 7 12 12 C 1.53722 * 107.94329 * 180.52009 * 11 10 8 13 13 H 1.08999 * 112.56132 * 139.71849 * 12 11 10 14 14 C 1.53691 * 109.34428 * 266.25702 * 12 11 10 15 15 N 1.47168 * 107.73349 * 128.69347 * 14 12 11 16 16 C 1.36942 * 125.25225 * 180.36095 * 15 14 12 17 17 H 1.08001 * 119.99618 * 179.18021 * 16 15 14 18 18 C 1.38809 * 120.00309 * 359.18203 * 16 15 14 19 19 N 1.31621 * 119.99518 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00160 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47304 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47016 * 119.99889 * 20 18 16 23 23 H 1.48500 * 109.47092 * 239.99623 * 20 18 16 24 24 C 1.46739 * 109.41489 * 359.65316 * 15 14 12 25 25 C 1.53927 * 106.72082 * 342.40530 * 24 15 14 26 26 H 1.09001 * 113.01519 * 150.83040 * 25 24 15 27 27 C 1.46781 * 125.33747 * 359.69357 * 10 8 7 28 28 C 1.38245 * 120.10978 * 0.02562 * 6 5 4 29 29 C 1.50703 * 119.97060 * 179.97438 * 28 6 5 30 30 C 1.38164 * 120.05768 * 359.67104 * 28 6 5 31 31 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 32 32 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 34 34 H 1.07994 * 120.02725 * 359.97438 * 4 3 2 35 35 H 1.08007 * 119.96925 * 180.02562 * 5 4 3 36 36 H 1.08996 * 109.46948 * 25.00386 * 7 6 5 37 37 H 1.09006 * 109.47323 * 145.00277 * 7 6 5 38 38 H 1.08991 * 109.77421 * 300.14421 * 11 10 8 39 39 H 1.09000 * 109.77166 * 60.90266 * 11 10 8 40 40 H 1.09002 * 109.76150 * 247.19316 * 14 12 11 41 41 H 1.08996 * 109.76091 * 7.91095 * 14 12 11 42 42 H 0.96999 * 119.99884 * 179.97438 * 19 18 16 43 43 H 1.09000 * 110.00910 * 223.09284 * 24 15 14 44 44 H 1.09005 * 110.01405 * 101.72132 * 24 15 14 45 45 H 1.08996 * 110.02332 * 280.79610 * 27 10 8 46 46 H 1.08999 * 110.02712 * 42.21019 * 27 10 8 47 47 H 1.08998 * 109.47510 * 89.99524 * 29 28 6 48 48 H 1.09001 * 109.47060 * 209.99519 * 29 28 6 49 49 H 1.09004 * 109.47151 * 329.99244 * 29 28 6 50 50 H 1.07998 * 120.03046 * 180.30014 * 30 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3018 3.6759 -0.0016 7 6 3.9860 5.0186 -0.0028 8 6 4.3227 5.4097 -1.4186 9 8 4.0358 4.6706 -2.3364 10 7 4.9426 6.5808 -1.6650 11 6 5.3242 7.0759 -2.9918 12 6 6.0140 8.4375 -2.8088 13 1 6.8757 8.5612 -3.4648 14 6 4.9748 9.5594 -2.9619 15 7 5.0934 10.4431 -1.7911 16 6 4.3296 11.5561 -1.5603 17 1 4.4805 12.1379 -0.6630 18 6 3.3616 11.9364 -2.4796 19 7 3.1781 11.2276 -3.5733 20 14 2.3194 13.4542 -2.1644 21 1 2.7191 14.0700 -0.8735 22 1 2.5231 14.4316 -3.2637 23 1 0.8868 13.0674 -2.1051 24 6 6.1452 9.9365 -0.9021 25 6 6.3959 8.4715 -1.3026 26 1 7.4183 8.1461 -1.1105 27 6 5.3365 7.5632 -0.6481 28 6 4.0559 2.5172 -0.0032 29 6 5.5607 2.5983 -0.0055 30 6 3.4311 1.2849 0.0036 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 0.2128 2.3204 0.0005 35 1 1.3339 4.5114 0.0008 36 1 3.3216 5.7652 0.4321 37 1 4.9017 4.9603 0.5856 38 1 6.0122 6.3744 -3.4633 39 1 4.4350 7.1934 -3.6113 40 1 5.1846 10.1356 -3.8630 41 1 3.9750 9.1297 -3.0237 42 1 2.5014 11.4931 -4.2155 43 1 5.8138 9.9881 0.1350 44 1 7.0567 10.5199 -1.0323 45 1 4.4718 8.1532 -0.3445 46 1 5.7642 7.0550 0.2160 47 1 5.9252 2.6176 1.0215 48 1 5.9706 1.7293 -0.5203 49 1 5.8748 3.5067 -0.5197 50 1 4.0206 0.3800 0.0073 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048839792.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:40 Heat of formation + Delta-G solvation = -38.171011 kcal Electronic energy + Delta-G solvation = -30356.051208 eV Core-core repulsion = 26348.286599 eV Total energy + Delta-G solvation = -4007.764610 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.68339 -41.05956 -39.76574 -38.51930 -36.50499 -34.13836 -33.65190 -33.22210 -31.83329 -31.05212 -29.58724 -27.87838 -27.45904 -27.01857 -26.74895 -24.47754 -23.19800 -21.92847 -21.71462 -20.73158 -20.24457 -18.83844 -18.69181 -18.11626 -17.65579 -17.23029 -16.72706 -16.64862 -16.51020 -15.99194 -15.74374 -15.50371 -15.18585 -14.79944 -14.69372 -14.48660 -14.30937 -14.17864 -14.07444 -13.60836 -13.40363 -13.25858 -13.16182 -13.05974 -13.05197 -12.92218 -12.74661 -12.71484 -12.64466 -12.29298 -11.93328 -11.87228 -11.84532 -11.80075 -11.71696 -11.48814 -11.32023 -10.92825 -10.68505 -9.73272 -9.60766 -9.04976 -8.85303 -7.83920 -5.18408 0.36392 0.40100 1.46052 1.46125 1.56567 1.63402 2.05585 2.35803 2.50269 2.75722 3.34639 3.37663 3.59910 3.70384 3.78599 3.82072 3.93091 3.93934 4.07468 4.16128 4.27432 4.33187 4.34870 4.36412 4.37297 4.41455 4.54330 4.55835 4.63428 4.64702 4.71649 4.77679 4.82878 4.83077 4.88373 4.97037 5.03485 5.09374 5.14019 5.16745 5.29488 5.34356 5.40936 5.44564 5.50950 5.65405 5.66982 5.79421 5.81903 6.22358 6.43378 6.57852 7.12035 7.17456 7.82155 8.43702 9.26348 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015468 B = 0.002480 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.728654 B =11288.513528 C =12340.616288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.117 3.883 4 C -0.219 4.219 5 C -0.079 4.079 6 C -0.117 4.117 7 C -0.085 4.085 8 C 0.524 3.476 9 O -0.581 6.581 10 N -0.611 5.611 11 C 0.125 3.875 12 C -0.113 4.113 13 H 0.112 0.888 14 C 0.199 3.801 15 N -0.624 5.624 16 C -0.233 4.233 17 H 0.088 0.912 18 C -0.071 4.071 19 N -0.953 5.953 20 Si 0.974 3.026 21 H -0.261 1.261 22 H -0.296 1.296 23 H -0.297 1.297 24 C 0.139 3.861 25 C -0.092 4.092 26 H 0.136 0.864 27 C 0.112 3.888 28 C -0.037 4.037 29 C -0.114 4.114 30 C -0.167 4.167 31 H 0.057 0.943 32 H 0.121 0.879 33 H 0.065 0.935 34 H 0.144 0.856 35 H 0.129 0.871 36 H 0.111 0.889 37 H 0.133 0.867 38 H 0.075 0.925 39 H 0.035 0.965 40 H 0.003 0.997 41 H 0.005 0.995 42 H 0.243 0.757 43 H 0.050 0.950 44 H 0.031 0.969 45 H 0.051 0.949 46 H 0.114 0.886 47 H 0.099 0.901 48 H 0.074 0.926 49 H 0.060 0.940 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.577 -19.643 12.200 23.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.071 3.929 4 C -0.238 4.238 5 C -0.097 4.097 6 C -0.118 4.118 7 C -0.125 4.125 8 C 0.315 3.685 9 O -0.461 6.461 10 N -0.344 5.344 11 C 0.002 3.998 12 C -0.133 4.133 13 H 0.130 0.870 14 C 0.074 3.926 15 N -0.351 5.351 16 C -0.362 4.362 17 H 0.105 0.895 18 C -0.263 4.263 19 N -0.603 5.603 20 Si 0.803 3.197 21 H -0.185 1.185 22 H -0.223 1.223 23 H -0.225 1.225 24 C 0.014 3.986 25 C -0.112 4.112 26 H 0.154 0.846 27 C -0.010 4.010 28 C -0.037 4.037 29 C -0.170 4.170 30 C -0.186 4.186 31 H 0.075 0.925 32 H 0.139 0.861 33 H 0.084 0.916 34 H 0.161 0.839 35 H 0.147 0.853 36 H 0.130 0.870 37 H 0.150 0.850 38 H 0.093 0.907 39 H 0.053 0.947 40 H 0.021 0.979 41 H 0.024 0.976 42 H 0.052 0.948 43 H 0.069 0.931 44 H 0.049 0.951 45 H 0.069 0.931 46 H 0.132 0.868 47 H 0.117 0.883 48 H 0.093 0.907 49 H 0.079 0.921 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.321 -20.170 11.667 23.537 hybrid contribution -1.550 1.335 -0.798 2.196 sum 1.771 -18.835 10.870 21.818 Atomic orbital electron populations 1.23317 0.76648 1.05545 1.02032 1.86025 1.23311 1.26740 1.88763 1.19176 0.92688 0.84527 0.96459 1.21343 1.00881 0.91941 1.09635 1.21025 0.94192 0.97799 0.96651 1.19259 0.93521 0.93955 1.05024 1.20627 1.03937 0.95374 0.92521 1.20816 0.76261 0.79191 0.92270 1.90686 1.54758 1.52478 1.48142 1.48399 1.58449 1.18812 1.08726 1.21625 0.98236 0.94777 0.85142 1.22988 0.98626 0.93135 0.98531 0.87018 1.20829 0.93916 0.88680 0.89217 1.44665 1.40281 1.28084 1.22060 1.19501 1.11241 1.01252 1.04178 0.89460 1.25632 1.01379 1.02217 0.97085 1.70215 1.36623 1.41376 1.12067 0.85060 0.77929 0.79024 0.77667 1.18502 1.22308 1.22490 1.21392 0.91039 0.92064 0.94101 1.22992 1.00250 0.94685 0.93250 0.84599 1.22186 0.97483 0.89699 0.91596 1.19766 0.97214 0.91353 0.95374 1.20877 0.89318 1.03114 1.03723 1.20441 0.91594 0.98488 1.08076 0.92471 0.86059 0.91620 0.83881 0.85321 0.87037 0.84952 0.90664 0.94682 0.97873 0.97636 0.94785 0.93134 0.95132 0.93066 0.86778 0.88298 0.90670 0.92121 0.84228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.37 16 2 O -0.33 -7.29 10.50 -92.48 -0.97 -8.26 16 3 C 0.12 2.83 6.69 22.51 0.15 2.98 16 4 C -0.22 -5.12 9.04 22.36 0.20 -4.92 16 5 C -0.08 -1.97 9.67 22.25 0.22 -1.76 16 6 C -0.12 -2.93 4.37 -19.85 -0.09 -3.01 16 7 C -0.09 -1.92 4.18 29.10 0.12 -1.80 16 8 C 0.52 16.36 7.05 87.66 0.62 16.97 16 9 O -0.58 -22.98 16.34 -3.03 -0.05 -23.03 16 10 N -0.61 -18.79 3.31 -817.09 -2.71 -21.50 16 11 C 0.13 4.28 6.23 86.59 0.54 4.82 16 12 C -0.11 -3.84 4.01 -9.49 -0.04 -3.88 16 13 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 14 C 0.20 9.54 4.77 86.48 0.41 9.96 16 15 N -0.62 -30.17 3.39 -696.54 -2.36 -32.53 16 16 C -0.23 -12.55 10.25 84.03 0.86 -11.68 16 17 H 0.09 4.44 7.83 -2.91 -0.02 4.42 16 18 C -0.07 -3.98 5.48 84.86 0.47 -3.52 16 19 N -0.95 -57.82 10.24 21.65 0.22 -57.60 16 20 Si 0.97 45.57 29.55 68.60 2.03 47.60 16 21 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 23 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 24 C 0.14 4.86 6.41 86.65 0.56 5.42 16 25 C -0.09 -2.52 4.14 -9.27 -0.04 -2.56 16 26 H 0.14 2.60 8.14 -2.39 -0.02 2.58 16 27 C 0.11 2.94 5.88 86.71 0.51 3.45 16 28 C -0.04 -0.86 5.88 -19.88 -0.12 -0.98 16 29 C -0.11 -2.02 9.21 71.24 0.66 -1.37 16 30 C -0.17 -3.97 9.64 22.37 0.22 -3.75 16 31 H 0.06 0.75 7.66 -2.39 -0.02 0.73 16 32 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 34 H 0.14 2.65 6.30 -2.91 -0.02 2.63 16 35 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 36 H 0.11 2.28 8.05 -2.39 -0.02 2.26 16 37 H 0.13 2.09 6.72 -2.38 -0.02 2.07 16 38 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.03 1.44 7.44 -2.39 -0.02 1.42 16 40 H 0.00 0.17 7.40 -2.39 -0.02 0.15 16 41 H 0.01 0.31 6.58 -2.39 -0.02 0.29 16 42 H 0.24 14.49 8.31 -92.71 -0.77 13.72 16 43 H 0.05 1.65 7.97 -2.39 -0.02 1.63 16 44 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 45 H 0.05 1.65 7.76 -2.39 -0.02 1.63 16 46 H 0.11 1.94 7.61 -2.39 -0.02 1.92 16 47 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.07 1.23 8.09 -2.39 -0.02 1.21 16 49 H 0.06 1.19 6.15 -2.38 -0.01 1.17 16 50 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -77.10 393.86 3.45 -73.65 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.93 Total: 15.95 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 6.36 Total: 5.73 kcal Atomic # 7 Polarization: -106.79 SS G_CDS: -4.85 Total: -111.63 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -1.02 Total: -31.29 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -77.10 3.45 -73.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048839792.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.476 kcal (2) G-P(sol) polarization free energy of solvation -77.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds