Wall clock time and date at job start Wed Apr 1 2020 04:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38264 * 119.99781 * 2 1 4 4 C 1.38204 * 120.00010 * 179.97438 * 3 2 1 5 5 C 1.38259 * 120.00054 * 359.76977 * 4 3 2 6 6 C 1.38212 * 119.99943 * 0.45962 * 5 4 3 7 7 C 1.50707 * 120.00342 * 179.78897 * 6 5 4 8 8 H 1.08994 * 115.56075 * 154.02272 * 7 6 5 9 9 C 1.53002 * 117.49481 * 8.33484 * 7 6 5 10 10 C 1.52994 * 60.03279 * 252.52258 * 9 7 6 11 11 H 1.08999 * 117.49943 * 107.50107 * 10 9 7 12 12 C 1.50702 * 117.50219 * 252.50059 * 10 9 7 13 13 O 1.21278 * 119.99493 * 68.60507 * 12 10 9 14 14 N 1.34772 * 120.00166 * 248.61174 * 12 10 9 15 15 C 1.46496 * 120.00493 * 179.97438 * 14 12 10 16 16 C 1.52998 * 109.47592 * 179.97438 * 15 14 12 17 17 H 1.09003 * 109.67708 * 300.11765 * 16 15 14 18 18 C 1.53291 * 109.68107 * 179.56471 * 16 15 14 19 19 O 1.42959 * 109.22291 * 187.97279 * 18 16 15 20 20 C 1.42966 * 114.16683 * 62.57520 * 19 18 16 21 21 C 1.53288 * 109.22404 * 297.42592 * 20 19 18 22 22 N 1.47146 * 109.68060 * 60.63262 * 16 15 14 23 23 C 1.36937 * 120.98406 * 350.23961 * 22 16 15 24 24 H 1.07995 * 119.99917 * 31.11202 * 23 22 16 25 25 C 1.38813 * 120.00038 * 211.10347 * 23 22 16 26 26 N 1.31619 * 119.99906 * 10.91764 * 25 23 22 27 27 Si 1.86798 * 120.00142 * 190.91753 * 25 23 22 28 28 H 1.48496 * 109.47231 * 59.99805 * 27 25 23 29 29 H 1.48495 * 109.47245 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.46710 * 299.99940 * 27 25 23 31 31 C 1.38214 * 120.00244 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47546 * 270.02051 * 1 2 3 33 33 H 1.09000 * 109.47566 * 30.02726 * 1 2 3 34 34 H 1.09002 * 109.47278 * 150.02445 * 1 2 3 35 35 H 1.07998 * 119.99645 * 359.97438 * 3 2 1 36 36 H 1.08005 * 120.00457 * 179.97438 * 4 3 2 37 37 H 1.08001 * 120.00196 * 180.25360 * 5 4 3 38 38 H 1.09002 * 117.49411 * 145.02012 * 9 7 6 39 39 H 1.09004 * 117.49893 * 0.03012 * 9 7 6 40 40 H 0.97004 * 119.99833 * 359.97438 * 14 12 10 41 41 H 1.08999 * 109.46719 * 300.00436 * 15 14 12 42 42 H 1.08999 * 109.47079 * 59.99130 * 15 14 12 43 43 H 1.09001 * 109.51327 * 307.89461 * 18 16 15 44 44 H 1.08997 * 109.51580 * 68.04897 * 18 16 15 45 45 H 1.09005 * 109.51261 * 177.49724 * 20 19 18 46 46 H 1.09006 * 109.54908 * 57.37406 * 20 19 18 47 47 H 1.09004 * 109.68164 * 292.57166 * 21 20 19 48 48 H 1.09005 * 109.68056 * 172.02610 * 21 20 19 49 49 H 0.97003 * 120.00293 * 180.02562 * 26 25 23 50 50 H 1.07996 * 120.00073 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2716 0.0002 0.0059 6 6 3.5806 -1.1968 0.0011 7 6 4.3342 -2.5020 0.0021 8 1 3.8020 -3.3519 0.4292 9 6 5.8495 -2.4426 0.2052 10 6 5.2757 -2.7753 -1.1735 11 1 5.3500 -2.0112 -1.9473 12 6 5.3963 -4.1991 -1.6523 13 8 4.7602 -5.0773 -1.1093 14 7 6.2110 -4.4964 -2.6839 15 6 6.3287 -5.8805 -3.1492 16 6 7.3092 -5.9428 -4.3220 17 1 6.9473 -5.3154 -5.1366 18 6 7.4442 -7.3912 -4.8056 19 8 8.4949 -7.4687 -5.7720 20 6 9.7850 -7.1220 -5.2629 21 6 9.7698 -5.6599 -4.8027 22 7 8.6339 -5.4736 -3.8860 23 6 8.8045 -4.8808 -2.6634 24 1 8.1790 -5.1690 -1.8316 25 6 9.7816 -3.9096 -2.4933 26 7 10.3961 -3.4037 -3.5415 27 14 10.2243 -3.3206 -0.7768 28 1 10.7145 -4.4676 0.0290 29 1 11.2875 -2.2879 -0.8667 30 1 9.0223 -2.7377 -0.1282 31 6 2.1981 -1.1969 0.0005 32 1 -0.3634 0.0004 1.0277 33 1 -0.3634 0.8897 -0.5142 34 1 -0.3634 -0.8902 -0.5135 35 1 1.6581 2.1327 -0.0004 36 1 4.1203 2.1328 0.0001 37 1 5.3516 0.0002 0.0104 38 1 6.3142 -3.2536 0.7660 39 1 6.3013 -1.4596 0.3386 40 1 6.7195 -3.7938 -3.1185 41 1 6.6942 -6.5073 -2.3358 42 1 5.3518 -6.2392 -3.4732 43 1 7.6793 -8.0371 -3.9597 44 1 6.5070 -7.7121 -5.2603 45 1 10.5319 -7.2493 -6.0466 46 1 10.0295 -7.7669 -4.4188 47 1 9.6561 -5.0044 -5.6661 48 1 10.7009 -5.4282 -4.2854 49 1 11.0792 -2.7252 -3.4227 50 1 1.6581 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051159923.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:51 Heat of formation + Delta-G solvation = -8.401310 kcal Electronic energy + Delta-G solvation = -30363.208104 eV Core-core repulsion = 26356.734406 eV Total energy + Delta-G solvation = -4006.473699 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.11087 -39.18165 -38.38960 -36.43492 -35.21828 -33.56463 -32.61580 -31.58133 -30.86934 -30.42118 -27.30161 -27.02832 -26.04884 -23.84232 -23.46632 -23.21536 -22.14729 -21.54737 -19.93528 -19.72204 -19.27050 -17.39960 -16.86025 -16.29850 -15.92282 -15.75280 -15.32148 -15.08982 -14.82844 -14.64607 -14.42260 -14.12641 -13.95401 -13.86046 -13.61244 -13.51470 -13.21656 -13.01010 -12.70337 -12.46939 -12.36613 -12.21923 -11.92294 -11.78688 -11.58007 -11.32065 -11.06734 -10.97041 -10.89318 -10.78075 -10.56194 -10.44224 -10.29720 -10.26099 -10.06602 -9.68844 -9.44482 -9.00164 -8.81771 -8.68784 -8.52999 -8.27704 -6.75212 -5.92600 -3.42487 1.22593 1.31234 2.97122 3.26932 3.33973 3.35858 3.50295 3.79216 4.18743 4.32542 4.50805 4.59551 4.70806 4.82353 4.93287 5.04543 5.04857 5.11371 5.17398 5.23720 5.25637 5.37174 5.41374 5.45176 5.58159 5.59700 5.66520 5.71315 5.82231 5.86256 5.96029 6.00457 6.03060 6.07850 6.12812 6.14389 6.15732 6.22185 6.31516 6.41355 6.49366 6.50623 6.62035 6.73869 6.93631 7.05105 7.10187 7.46634 7.67939 7.84847 8.21267 8.27440 8.81882 9.03488 9.63960 10.23198 11.13885 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013624 B = 0.002894 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.727499 B = 9674.217817 C =10944.220495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.087 4.087 3 C -0.128 4.128 4 C -0.114 4.114 5 C -0.125 4.125 6 C -0.041 4.041 7 C -0.092 4.092 8 H 0.125 0.875 9 C -0.140 4.140 10 C -0.166 4.166 11 H 0.122 0.878 12 C 0.538 3.462 13 O -0.565 6.565 14 N -0.688 5.688 15 C 0.136 3.864 16 C 0.125 3.875 17 H 0.041 0.959 18 C 0.056 3.944 19 O -0.392 6.392 20 C 0.035 3.965 21 C 0.144 3.856 22 N -0.591 5.591 23 C -0.256 4.256 24 H 0.073 0.927 25 C 0.011 3.989 26 N -0.900 5.900 27 Si 0.895 3.105 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.276 1.276 31 C -0.111 4.111 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.416 0.584 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.047 0.953 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.040 0.960 47 H 0.029 0.971 48 H 0.092 0.908 49 H 0.256 0.744 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.521 5.523 4.124 14.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.087 4.087 3 C -0.147 4.147 4 C -0.132 4.132 5 C -0.143 4.143 6 C -0.041 4.041 7 C -0.110 4.110 8 H 0.143 0.857 9 C -0.178 4.178 10 C -0.187 4.187 11 H 0.140 0.860 12 C 0.324 3.676 13 O -0.445 6.445 14 N -0.339 5.339 15 C 0.012 3.988 16 C 0.018 3.982 17 H 0.059 0.941 18 C -0.023 4.023 19 O -0.311 6.311 20 C -0.043 4.043 21 C 0.018 3.982 22 N -0.317 5.317 23 C -0.385 4.385 24 H 0.091 0.909 25 C -0.189 4.189 26 N -0.544 5.544 27 Si 0.725 3.275 28 H -0.210 1.210 29 H -0.216 1.216 30 H -0.201 1.201 31 C -0.129 4.129 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.254 0.746 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.101 0.899 45 H 0.098 0.902 46 H 0.059 0.941 47 H 0.047 0.953 48 H 0.110 0.890 49 H 0.066 0.934 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.841 4.981 4.277 14.422 hybrid contribution 0.884 0.855 0.838 1.489 sum -11.957 5.836 5.116 14.255 Atomic orbital electron populations 1.20782 0.91286 1.02735 1.02214 1.19888 0.95986 0.93096 0.99777 1.20994 0.94285 0.97353 1.02020 1.21098 0.94257 0.97881 0.99925 1.21125 1.00293 0.91930 1.00962 1.19167 0.93255 0.93109 0.98617 1.21094 0.92016 0.96463 1.01434 0.85696 1.23077 0.94587 1.03631 0.96476 1.22292 1.06367 0.96575 0.93488 0.86003 1.19449 0.79231 0.88804 0.80127 1.90624 1.47101 1.49041 1.57768 1.45927 1.43612 1.10827 1.33513 1.21162 0.97466 0.83398 0.96785 1.21428 0.87931 0.94419 0.94455 0.94127 1.22863 0.90467 0.96709 0.92259 1.87801 1.16973 1.89276 1.37058 1.23353 0.83904 0.99138 0.97918 1.21414 0.93382 0.90019 0.93338 1.44080 1.00580 1.69813 1.17190 1.19187 1.18223 1.14427 0.86712 0.90939 1.25136 1.00491 0.96469 0.96803 1.69972 1.27522 1.29144 1.27757 0.86476 0.78304 0.78347 0.84413 1.21048 1.21637 1.20136 1.20876 0.93361 0.97700 1.00989 0.91275 0.91663 0.91493 0.86356 0.86089 0.85731 0.87794 0.87715 0.74551 0.91547 0.92359 0.93510 0.89921 0.90249 0.94127 0.95275 0.88972 0.93410 0.85932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 36.00 0.36 -0.53 16 2 C -0.09 -0.92 5.88 -104.62 -0.62 -1.54 16 3 C -0.13 -1.31 9.70 -39.58 -0.38 -1.69 16 4 C -0.11 -1.21 10.05 -39.59 -0.40 -1.61 16 5 C -0.13 -1.50 9.30 -39.58 -0.37 -1.87 16 6 C -0.04 -0.53 5.61 -104.62 -0.59 -1.12 16 7 C -0.09 -1.29 5.56 -91.73 -0.51 -1.80 16 8 H 0.13 1.85 7.67 -51.93 -0.40 1.45 16 9 C -0.14 -2.06 9.56 -26.73 -0.26 -2.31 16 10 C -0.17 -2.59 5.83 -91.74 -0.53 -3.13 16 11 H 0.12 1.77 8.14 -51.93 -0.42 1.35 16 12 C 0.54 9.97 7.61 -10.99 -0.08 9.89 16 13 O -0.56 -11.81 16.26 5.56 0.09 -11.72 16 14 N -0.69 -12.91 3.77 -60.30 -0.23 -13.14 16 15 C 0.14 2.51 4.45 -4.05 -0.02 2.49 16 16 C 0.12 2.42 3.21 -67.43 -0.22 2.20 16 17 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 18 C 0.06 0.99 6.29 37.31 0.23 1.22 16 19 O -0.39 -7.61 10.74 -35.23 -0.38 -7.99 16 20 C 0.03 0.67 6.98 37.31 0.26 0.93 16 21 C 0.14 3.24 5.38 -3.54 -0.02 3.22 16 22 N -0.59 -13.43 3.03 -164.31 -0.50 -13.92 16 23 C -0.26 -6.22 7.06 -15.06 -0.11 -6.33 16 24 H 0.07 1.80 5.81 -52.49 -0.30 1.49 16 25 C 0.01 0.27 5.05 -17.43 -0.09 0.18 16 26 N -0.90 -23.88 11.14 55.49 0.62 -23.26 16 27 Si 0.90 20.22 29.57 -169.99 -5.03 15.19 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 29 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 30 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 31 C -0.11 -1.33 9.39 -39.58 -0.37 -1.70 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 34 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 35 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 37 H 0.12 1.41 6.02 -52.49 -0.32 1.09 16 38 H 0.10 1.63 8.14 -51.93 -0.42 1.20 16 39 H 0.10 1.37 6.17 -51.93 -0.32 1.05 16 40 H 0.42 8.18 7.32 -40.82 -0.30 7.88 16 41 H 0.07 1.33 7.57 -51.93 -0.39 0.94 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 45 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.09 2.28 6.33 -51.93 -0.33 1.95 16 49 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 50 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 399.70 15.07 6.02 6.02 Total: -1.00 -28.73 399.70 -10.93 -39.66 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -7.83 Total: 12.64 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -3.70 Total: -3.49 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -0.11 Total: -50.32 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.29 Total: -19.70 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.19 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -28.73 -10.93 -39.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051159923.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.258 kcal (2) G-P(sol) polarization free energy of solvation -28.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds