Wall clock time and date at job start Wed Apr 1 2020 04:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38258 * 119.99640 * 2 1 4 4 C 1.38214 * 119.99685 * 180.25625 * 3 2 1 5 5 C 1.38258 * 119.99889 * 359.76348 * 4 3 2 6 6 C 1.38211 * 120.00314 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00627 * 179.97438 * 6 5 4 8 8 H 1.09000 * 115.55715 * 154.25481 * 7 6 5 9 9 C 1.53004 * 117.49614 * 8.58362 * 7 6 5 10 10 C 1.53005 * 60.00049 * 252.51391 * 9 7 6 11 11 H 1.08990 * 117.50130 * 107.49100 * 10 9 7 12 12 C 1.50698 * 117.49546 * 252.51192 * 10 9 7 13 13 O 1.21282 * 120.00393 * 68.62085 * 12 10 9 14 14 N 1.34779 * 120.00066 * 248.61848 * 12 10 9 15 15 C 1.46496 * 120.00340 * 179.97438 * 14 12 10 16 16 C 1.52994 * 109.47506 * 179.97438 * 15 14 12 17 17 H 1.09010 * 109.67456 * 59.26556 * 16 15 14 18 18 C 1.53298 * 109.68661 * 179.78256 * 16 15 14 19 19 O 1.42954 * 109.22410 * 172.02872 * 18 16 15 20 20 C 1.42967 * 114.16731 * 297.42108 * 19 18 16 21 21 C 1.53288 * 109.22214 * 62.58040 * 20 19 18 22 22 N 1.47147 * 108.38534 * 307.69969 * 21 20 19 23 23 C 1.36940 * 120.98125 * 230.55794 * 22 21 20 24 24 H 1.08001 * 120.00364 * 148.96743 * 23 22 21 25 25 C 1.38812 * 120.00029 * 328.96463 * 23 22 21 26 26 N 1.31620 * 120.00087 * 349.12293 * 25 23 22 27 27 Si 1.86803 * 120.00293 * 169.12005 * 25 23 22 28 28 H 1.48503 * 109.46834 * 0.02562 * 27 25 23 29 29 H 1.48496 * 109.47282 * 119.99938 * 27 25 23 30 30 H 1.48499 * 109.47075 * 240.00429 * 27 25 23 31 31 C 1.38214 * 119.99881 * 179.78490 * 2 1 3 32 32 H 1.09000 * 109.47009 * 270.21377 * 1 2 3 33 33 H 1.08996 * 109.47229 * 30.21012 * 1 2 3 34 34 H 1.09002 * 109.46745 * 150.21728 * 1 2 3 35 35 H 1.08001 * 120.00507 * 0.03981 * 3 2 1 36 36 H 1.07994 * 120.00185 * 179.78634 * 4 3 2 37 37 H 1.08000 * 120.00360 * 179.97438 * 5 4 3 38 38 H 1.09005 * 117.49789 * 359.97438 * 9 7 6 39 39 H 1.09001 * 117.49890 * 145.02432 * 9 7 6 40 40 H 0.97002 * 119.99534 * 0.02562 * 14 12 10 41 41 H 1.09001 * 109.47052 * 300.00405 * 15 14 12 42 42 H 1.09005 * 109.46933 * 59.99978 * 15 14 12 43 43 H 1.08997 * 109.51211 * 291.95401 * 18 16 15 44 44 H 1.08999 * 109.50516 * 52.05279 * 18 16 15 45 45 H 1.09003 * 109.50913 * 182.50785 * 20 19 18 46 46 H 1.09003 * 109.51143 * 302.65667 * 20 19 18 47 47 H 1.08999 * 109.68118 * 67.42437 * 21 20 19 48 48 H 1.09003 * 109.68311 * 187.93998 * 21 20 19 49 49 H 0.96997 * 119.99697 * 179.97438 * 26 25 23 50 50 H 1.07994 * 120.00062 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0054 5 6 4.2717 0.0001 -0.0058 6 6 3.5807 -1.1969 -0.0014 7 6 4.3341 -2.5020 -0.0024 8 1 3.8038 -3.3515 0.4280 9 6 5.8503 -2.4426 0.1942 10 6 5.2698 -2.7766 -1.1815 11 1 5.3403 -2.0134 -1.9563 12 6 5.3876 -4.2010 -1.6592 13 8 4.7537 -5.0785 -1.1123 14 7 6.1975 -4.4999 -2.6942 15 6 6.3125 -5.8846 -3.1583 16 6 7.2875 -5.9487 -4.3356 17 1 8.2642 -5.5783 -4.0238 18 6 7.4156 -7.3969 -4.8217 19 8 8.1779 -7.4219 -6.0308 20 6 7.5755 -6.7141 -7.1172 21 6 7.4556 -5.2310 -6.7486 22 7 6.7776 -5.1297 -5.4466 23 6 5.7034 -4.2980 -5.2741 24 1 4.9291 -4.5556 -4.5666 25 6 5.6097 -3.1239 -6.0086 26 7 6.6418 -2.7003 -6.7070 27 14 4.0187 -2.1449 -6.0059 28 1 3.0180 -2.8291 -5.1481 29 1 4.2767 -0.7825 -5.4744 30 1 3.4968 -2.0447 -7.3926 31 6 2.1981 -1.1970 0.0045 32 1 -0.3633 0.0038 1.0277 33 1 -0.3633 0.8881 -0.5171 34 1 -0.3633 -0.8920 -0.5105 35 1 1.6583 2.1327 0.0006 36 1 4.1204 2.1327 -0.0088 37 1 5.3517 0.0000 -0.0104 38 1 6.3028 -1.4594 0.3239 39 1 6.3174 -3.2531 0.7537 40 1 6.7048 -3.7981 -3.1314 41 1 6.6815 -6.5106 -2.3458 42 1 5.3339 -6.2433 -3.4775 43 1 7.9198 -7.9930 -4.0611 44 1 6.4232 -7.8076 -5.0075 45 1 8.1949 -6.8191 -8.0080 46 1 6.5838 -7.1221 -7.3122 47 1 8.4493 -4.7882 -6.6805 48 1 6.8728 -4.7099 -7.5082 49 1 6.5761 -1.8801 -7.2205 50 1 1.6581 -2.1322 0.0076 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051159924.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:55 Heat of formation + Delta-G solvation = -8.937714 kcal Electronic energy + Delta-G solvation = -30496.915675 eV Core-core repulsion = 26490.418716 eV Total energy + Delta-G solvation = -4006.496959 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.10704 -39.16448 -38.39145 -36.45203 -35.21668 -33.57497 -32.57359 -31.58009 -30.84423 -30.41938 -27.30059 -26.98669 -26.04364 -23.83339 -23.48334 -23.25008 -22.11662 -21.54140 -19.95270 -19.72653 -19.27074 -17.38980 -16.86551 -16.30726 -15.92255 -15.76295 -15.29279 -15.06932 -14.83782 -14.64800 -14.40697 -14.04393 -13.94865 -13.87417 -13.61930 -13.55975 -13.18276 -13.00537 -12.64822 -12.44344 -12.33501 -12.20976 -11.92375 -11.82145 -11.58516 -11.30046 -11.06985 -10.95413 -10.91167 -10.78215 -10.56458 -10.43212 -10.33256 -10.24885 -10.06880 -9.68294 -9.45366 -8.99547 -8.76950 -8.69441 -8.50513 -8.28602 -6.75537 -5.92892 -3.42554 1.26698 1.36082 2.94047 3.26406 3.36586 3.40174 3.56568 3.75435 4.14560 4.32656 4.51019 4.59506 4.74641 4.85363 4.90013 5.02112 5.07130 5.11309 5.17402 5.25076 5.27441 5.40139 5.46786 5.49545 5.57905 5.61750 5.69801 5.72449 5.74007 5.84634 5.98532 6.00222 6.03057 6.07637 6.10151 6.13966 6.15962 6.21825 6.31511 6.44081 6.50458 6.54227 6.63949 6.73786 6.97978 7.05280 7.09496 7.46920 7.69153 7.84817 8.20281 8.27267 8.80986 9.03741 9.63986 10.22864 11.13558 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013214 B = 0.003153 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.440579 B = 8879.533586 C =10070.529240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.128 4.128 4 C -0.114 4.114 5 C -0.125 4.125 6 C -0.043 4.043 7 C -0.088 4.088 8 H 0.125 0.875 9 C -0.146 4.146 10 C -0.169 4.169 11 H 0.126 0.874 12 C 0.538 3.462 13 O -0.564 6.564 14 N -0.689 5.689 15 C 0.136 3.864 16 C 0.125 3.875 17 H 0.041 0.959 18 C 0.056 3.944 19 O -0.392 6.392 20 C 0.035 3.965 21 C 0.144 3.856 22 N -0.591 5.591 23 C -0.254 4.254 24 H 0.074 0.926 25 C 0.011 3.989 26 N -0.899 5.899 27 Si 0.892 3.108 28 H -0.276 1.276 29 H -0.287 1.287 30 H -0.288 1.288 31 C -0.110 4.110 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.416 0.584 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.047 0.953 45 H 0.080 0.920 46 H 0.040 0.960 47 H 0.029 0.971 48 H 0.092 0.908 49 H 0.255 0.745 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.677 3.787 11.587 12.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 C -0.146 4.146 4 C -0.132 4.132 5 C -0.143 4.143 6 C -0.043 4.043 7 C -0.106 4.106 8 H 0.143 0.857 9 C -0.183 4.183 10 C -0.190 4.190 11 H 0.144 0.856 12 C 0.324 3.676 13 O -0.445 6.445 14 N -0.339 5.339 15 C 0.012 3.988 16 C 0.018 3.982 17 H 0.059 0.941 18 C -0.023 4.023 19 O -0.311 6.311 20 C -0.043 4.043 21 C 0.018 3.982 22 N -0.317 5.317 23 C -0.384 4.384 24 H 0.092 0.908 25 C -0.189 4.189 26 N -0.543 5.543 27 Si 0.722 3.278 28 H -0.200 1.200 29 H -0.214 1.214 30 H -0.215 1.215 31 C -0.128 4.128 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.254 0.746 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.065 0.935 45 H 0.098 0.902 46 H 0.059 0.941 47 H 0.047 0.953 48 H 0.111 0.889 49 H 0.065 0.935 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.925 3.218 11.816 12.860 hybrid contribution -0.795 1.192 -0.579 1.545 sum -4.719 4.409 11.237 12.961 Atomic orbital electron populations 1.20790 0.91260 1.02856 1.02162 1.19897 0.96047 0.93098 0.99619 1.21000 0.94314 0.97366 1.01901 1.21086 0.94280 0.97863 0.99975 1.21070 1.00121 0.91925 1.01178 1.19148 0.93312 0.93089 0.98796 1.21046 0.91826 0.96560 1.01209 0.85674 1.23089 0.95223 1.03374 0.96645 1.22367 1.06446 0.96884 0.93335 0.85622 1.19435 0.79380 0.88715 0.80046 1.90626 1.46449 1.49092 1.58297 1.45906 1.45135 1.10873 1.31959 1.21167 1.00060 0.82757 0.94843 1.21427 0.95563 0.92259 0.88951 0.94111 1.22861 0.95640 0.96744 0.87067 1.87800 1.48181 1.74652 1.20468 1.23355 0.96761 0.95674 0.88527 1.21413 0.97072 0.90552 0.89122 1.44098 1.34989 1.48304 1.04309 1.19274 0.97586 0.98317 1.23190 0.90835 1.25119 0.96856 0.96397 1.00519 1.69987 1.28210 1.22781 1.33339 0.86362 0.83608 0.80117 0.77735 1.20034 1.21395 1.21450 1.20891 0.93419 0.97769 1.00768 0.91263 0.91625 0.91436 0.86322 0.86083 0.85800 0.87666 0.87876 0.74622 0.92357 0.91498 0.89923 0.93510 0.90232 0.94122 0.95271 0.88948 0.93506 0.85893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.01 36.01 0.36 -0.68 16 2 C -0.09 -1.03 5.88 -104.62 -0.62 -1.64 16 3 C -0.13 -1.44 9.70 -39.58 -0.38 -1.82 16 4 C -0.11 -1.30 10.05 -39.58 -0.40 -1.70 16 5 C -0.13 -1.54 9.30 -39.58 -0.37 -1.91 16 6 C -0.04 -0.59 5.61 -104.63 -0.59 -1.17 16 7 C -0.09 -1.23 5.55 -91.77 -0.51 -1.74 16 8 H 0.13 1.85 7.67 -51.93 -0.40 1.45 16 9 C -0.15 -1.79 9.56 -26.73 -0.26 -2.05 16 10 C -0.17 -2.62 5.82 -91.77 -0.53 -3.15 16 11 H 0.13 2.00 8.14 -51.93 -0.42 1.57 16 12 C 0.54 9.95 7.61 -10.99 -0.08 9.87 16 13 O -0.56 -11.80 16.26 5.56 0.09 -11.71 16 14 N -0.69 -12.88 3.80 -60.30 -0.23 -13.10 16 15 C 0.14 2.51 4.44 -4.05 -0.02 2.49 16 16 C 0.13 2.42 3.20 -67.43 -0.22 2.21 16 17 H 0.04 0.82 8.14 -51.92 -0.42 0.40 16 18 C 0.06 0.98 6.29 37.31 0.23 1.22 16 19 O -0.39 -7.60 10.74 -35.23 -0.38 -7.98 16 20 C 0.03 0.67 6.98 37.31 0.26 0.93 16 21 C 0.14 3.25 5.38 -3.54 -0.02 3.23 16 22 N -0.59 -13.51 3.03 -164.31 -0.50 -14.01 16 23 C -0.25 -6.26 7.11 -15.06 -0.11 -6.37 16 24 H 0.07 1.87 5.81 -52.49 -0.30 1.56 16 25 C 0.01 0.27 5.06 -17.43 -0.09 0.19 16 26 N -0.90 -24.07 11.13 55.49 0.62 -23.45 16 27 Si 0.89 20.93 29.57 -169.99 -5.03 15.90 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 30 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 31 C -0.11 -1.45 9.39 -39.58 -0.37 -1.83 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 34 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 35 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 36 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.12 1.33 6.02 -52.49 -0.32 1.01 16 38 H 0.11 1.07 6.18 -51.93 -0.32 0.75 16 39 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.42 8.12 7.38 -40.82 -0.30 7.82 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 1.35 7.53 -51.93 -0.39 0.96 16 43 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.09 2.30 6.32 -51.93 -0.33 1.97 16 49 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 50 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 399.78 15.07 6.02 6.02 Total: -1.00 -29.52 399.78 -10.93 -40.45 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -7.83 Total: 11.81 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -3.70 Total: -3.94 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: -0.11 Total: -50.56 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.29 Total: -19.68 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.52 -10.93 -40.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051159924.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.511 kcal (2) G-P(sol) polarization free energy of solvation -29.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds