Wall clock time and date at job start Wed Apr 1 2020 04:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38258 * 119.99640 * 2 1 4 4 C 1.38214 * 119.99685 * 180.25625 * 3 2 1 5 5 C 1.38258 * 119.99889 * 359.76348 * 4 3 2 6 6 C 1.38211 * 120.00314 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00627 * 179.97438 * 6 5 4 8 8 H 1.09000 * 115.55715 * 154.25481 * 7 6 5 9 9 C 1.53004 * 117.49614 * 8.58362 * 7 6 5 10 10 C 1.53005 * 60.00049 * 252.51391 * 9 7 6 11 11 H 1.08990 * 117.50130 * 107.49100 * 10 9 7 12 12 C 1.50698 * 117.49546 * 252.51192 * 10 9 7 13 13 O 1.21282 * 120.00393 * 68.62085 * 12 10 9 14 14 N 1.34779 * 120.00066 * 248.61848 * 12 10 9 15 15 C 1.46496 * 120.00340 * 179.97438 * 14 12 10 16 16 C 1.52994 * 109.47506 * 179.97438 * 15 14 12 17 17 H 1.09010 * 109.67456 * 59.26556 * 16 15 14 18 18 C 1.53298 * 109.68661 * 179.78256 * 16 15 14 19 19 O 1.42954 * 109.22410 * 172.02872 * 18 16 15 20 20 C 1.42967 * 114.16731 * 297.42108 * 19 18 16 21 21 C 1.53288 * 109.22214 * 62.58040 * 20 19 18 22 22 N 1.47147 * 108.38534 * 307.69969 * 21 20 19 23 23 C 1.36940 * 120.98125 * 230.55794 * 22 21 20 24 24 H 1.08001 * 120.00364 * 148.96743 * 23 22 21 25 25 C 1.38812 * 120.00029 * 328.96463 * 23 22 21 26 26 N 1.31620 * 120.00087 * 349.12293 * 25 23 22 27 27 Si 1.86803 * 120.00293 * 169.12005 * 25 23 22 28 28 H 1.48503 * 109.46834 * 0.02562 * 27 25 23 29 29 H 1.48496 * 109.47282 * 119.99938 * 27 25 23 30 30 H 1.48499 * 109.47075 * 240.00429 * 27 25 23 31 31 C 1.38214 * 119.99881 * 179.78490 * 2 1 3 32 32 H 1.09000 * 109.47009 * 270.21377 * 1 2 3 33 33 H 1.08996 * 109.47229 * 30.21012 * 1 2 3 34 34 H 1.09002 * 109.46745 * 150.21728 * 1 2 3 35 35 H 1.08001 * 120.00507 * 0.03981 * 3 2 1 36 36 H 1.07994 * 120.00185 * 179.78634 * 4 3 2 37 37 H 1.08000 * 120.00360 * 179.97438 * 5 4 3 38 38 H 1.09005 * 117.49789 * 359.97438 * 9 7 6 39 39 H 1.09001 * 117.49890 * 145.02432 * 9 7 6 40 40 H 0.97002 * 119.99534 * 0.02562 * 14 12 10 41 41 H 1.09001 * 109.47052 * 300.00405 * 15 14 12 42 42 H 1.09005 * 109.46933 * 59.99978 * 15 14 12 43 43 H 1.08997 * 109.51211 * 291.95401 * 18 16 15 44 44 H 1.08999 * 109.50516 * 52.05279 * 18 16 15 45 45 H 1.09003 * 109.50913 * 182.50785 * 20 19 18 46 46 H 1.09003 * 109.51143 * 302.65667 * 20 19 18 47 47 H 1.08999 * 109.68118 * 67.42437 * 21 20 19 48 48 H 1.09003 * 109.68311 * 187.93998 * 21 20 19 49 49 H 0.96997 * 119.99697 * 179.97438 * 26 25 23 50 50 H 1.07994 * 120.00062 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0054 5 6 4.2717 0.0001 -0.0058 6 6 3.5807 -1.1969 -0.0014 7 6 4.3341 -2.5020 -0.0024 8 1 3.8038 -3.3515 0.4280 9 6 5.8503 -2.4426 0.1942 10 6 5.2698 -2.7766 -1.1815 11 1 5.3403 -2.0134 -1.9563 12 6 5.3876 -4.2010 -1.6592 13 8 4.7537 -5.0785 -1.1123 14 7 6.1975 -4.4999 -2.6942 15 6 6.3125 -5.8846 -3.1583 16 6 7.2875 -5.9487 -4.3356 17 1 8.2642 -5.5783 -4.0238 18 6 7.4156 -7.3969 -4.8217 19 8 8.1779 -7.4219 -6.0308 20 6 7.5755 -6.7141 -7.1172 21 6 7.4556 -5.2310 -6.7486 22 7 6.7776 -5.1297 -5.4466 23 6 5.7034 -4.2980 -5.2741 24 1 4.9291 -4.5556 -4.5666 25 6 5.6097 -3.1239 -6.0086 26 7 6.6418 -2.7003 -6.7070 27 14 4.0187 -2.1449 -6.0059 28 1 3.0180 -2.8291 -5.1481 29 1 4.2767 -0.7825 -5.4744 30 1 3.4968 -2.0447 -7.3926 31 6 2.1981 -1.1970 0.0045 32 1 -0.3633 0.0038 1.0277 33 1 -0.3633 0.8881 -0.5171 34 1 -0.3633 -0.8920 -0.5105 35 1 1.6583 2.1327 0.0006 36 1 4.1204 2.1327 -0.0088 37 1 5.3517 0.0000 -0.0104 38 1 6.3028 -1.4594 0.3239 39 1 6.3174 -3.2531 0.7537 40 1 6.7048 -3.7981 -3.1314 41 1 6.6815 -6.5106 -2.3458 42 1 5.3339 -6.2433 -3.4775 43 1 7.9198 -7.9930 -4.0611 44 1 6.4232 -7.8076 -5.0075 45 1 8.1949 -6.8191 -8.0080 46 1 6.5838 -7.1221 -7.3122 47 1 8.4493 -4.7882 -6.6805 48 1 6.8728 -4.7099 -7.5082 49 1 6.5761 -1.8801 -7.2205 50 1 1.6581 -2.1322 0.0076 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051159924.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:54 Heat of formation + Delta-G solvation = -24.445292 kcal Electronic energy + Delta-G solvation = -30497.588134 eV Core-core repulsion = 26490.418716 eV Total energy + Delta-G solvation = -4007.169418 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.32047 -40.43571 -39.85111 -37.64543 -36.80223 -35.30109 -33.45701 -33.25371 -32.18936 -31.73077 -29.05387 -27.87326 -27.46448 -25.30394 -24.97577 -24.40610 -23.21299 -22.92287 -21.47021 -21.08956 -20.50129 -18.86357 -18.22726 -17.63204 -17.49111 -17.28240 -16.53715 -16.31605 -16.20952 -16.12304 -15.88991 -15.43746 -15.42694 -15.14268 -14.83131 -14.74007 -14.64538 -14.29736 -14.05980 -13.62111 -13.49418 -13.21684 -13.14782 -13.04628 -12.92669 -12.80587 -12.76902 -12.51239 -12.23342 -12.15506 -12.01514 -11.88426 -11.86866 -11.60651 -11.44270 -11.31468 -10.96040 -10.64168 -10.57439 -9.87769 -9.68649 -9.43907 -8.63747 -7.89473 -5.39732 0.33703 0.45081 1.35577 1.42983 1.49185 1.56389 2.27176 2.42602 2.64821 3.02070 3.06642 3.26626 3.42109 3.55036 3.71875 3.84781 3.93391 4.01965 4.03393 4.12297 4.20644 4.22286 4.23574 4.34200 4.46901 4.47622 4.50657 4.58212 4.63124 4.65269 4.70037 4.74379 4.79479 4.82301 4.92426 4.98706 5.00000 5.05459 5.10650 5.14812 5.28150 5.29455 5.55035 5.55851 5.63288 5.65383 5.67867 5.69108 6.10213 6.28516 6.35995 6.68525 7.09470 7.31104 7.74835 8.30686 9.14993 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013214 B = 0.003153 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.440579 B = 8879.533586 C =10070.529240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.133 4.133 4 C -0.119 4.119 5 C -0.135 4.135 6 C -0.061 4.061 7 C -0.086 4.086 8 H 0.111 0.889 9 C -0.117 4.117 10 C -0.189 4.189 11 H 0.120 0.880 12 C 0.537 3.463 13 O -0.592 6.592 14 N -0.691 5.691 15 C 0.142 3.858 16 C 0.127 3.873 17 H 0.039 0.961 18 C 0.057 3.943 19 O -0.397 6.397 20 C 0.046 3.954 21 C 0.149 3.851 22 N -0.605 5.605 23 C -0.239 4.239 24 H 0.066 0.934 25 C -0.028 4.028 26 N -0.924 5.924 27 Si 0.939 3.061 28 H -0.282 1.282 29 H -0.288 1.288 30 H -0.292 1.292 31 C -0.134 4.134 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.109 0.891 40 H 0.412 0.588 41 H 0.081 0.919 42 H 0.047 0.953 43 H 0.118 0.882 44 H 0.048 0.952 45 H 0.105 0.895 46 H 0.043 0.957 47 H 0.008 0.992 48 H 0.066 0.934 49 H 0.250 0.750 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.514 4.234 12.719 13.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.151 4.151 4 C -0.136 4.136 5 C -0.153 4.153 6 C -0.061 4.061 7 C -0.105 4.105 8 H 0.129 0.871 9 C -0.154 4.154 10 C -0.210 4.210 11 H 0.138 0.862 12 C 0.324 3.676 13 O -0.475 6.475 14 N -0.340 5.340 15 C 0.018 3.982 16 C 0.020 3.980 17 H 0.057 0.943 18 C -0.021 4.021 19 O -0.315 6.315 20 C -0.032 4.032 21 C 0.023 3.977 22 N -0.331 5.331 23 C -0.369 4.369 24 H 0.083 0.917 25 C -0.225 4.225 26 N -0.570 5.570 27 Si 0.769 3.231 28 H -0.207 1.207 29 H -0.215 1.215 30 H -0.219 1.219 31 C -0.152 4.152 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.156 0.844 38 H 0.150 0.850 39 H 0.128 0.872 40 H 0.249 0.751 41 H 0.099 0.901 42 H 0.065 0.935 43 H 0.136 0.864 44 H 0.066 0.934 45 H 0.123 0.877 46 H 0.061 0.939 47 H 0.026 0.974 48 H 0.084 0.916 49 H 0.060 0.940 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.758 3.646 12.958 13.976 hybrid contribution -0.866 1.029 -0.879 1.607 sum -4.624 4.675 12.078 13.752 Atomic orbital electron populations 1.20834 0.89586 1.03322 1.03215 1.20240 0.97483 0.92891 0.98991 1.21368 0.94625 0.98102 1.00958 1.21453 0.94658 0.98534 0.98999 1.21301 1.01002 0.91829 1.01162 1.19222 0.93567 0.93238 1.00092 1.20991 0.92881 0.96609 0.99977 0.87090 1.23238 0.94040 1.04799 0.93315 1.22271 1.09535 0.94661 0.94543 0.86216 1.19901 0.78449 0.89749 0.79465 1.90603 1.47429 1.50294 1.59163 1.45949 1.45194 1.10832 1.32046 1.21122 0.98813 0.83102 0.95210 1.21555 0.95301 0.92913 0.88203 0.94336 1.22985 0.96279 0.95593 0.87255 1.87805 1.48589 1.74243 1.20885 1.23219 0.97625 0.92885 0.89442 1.21245 0.95204 0.92698 0.88513 1.44295 1.34753 1.48461 1.05603 1.19260 0.97718 0.98017 1.21891 0.91658 1.25521 0.98442 0.97357 1.01134 1.70088 1.29311 1.23070 1.34505 0.85639 0.81371 0.79093 0.76987 1.20744 1.21482 1.21935 1.21063 0.93729 0.98423 1.01971 0.89863 0.90320 0.91793 0.83901 0.83640 0.84370 0.85041 0.87223 0.75138 0.90092 0.93457 0.86364 0.93365 0.87704 0.93900 0.97413 0.91599 0.94020 0.86341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.91 10.01 71.24 0.71 -1.20 16 2 C -0.10 -2.17 5.88 -19.86 -0.12 -2.29 16 3 C -0.13 -2.71 9.70 22.27 0.22 -2.49 16 4 C -0.12 -2.44 10.05 22.27 0.22 -2.22 16 5 C -0.14 -3.13 9.30 22.27 0.21 -2.92 16 6 C -0.06 -1.63 5.61 -19.87 -0.11 -1.74 16 7 C -0.09 -2.39 5.55 -11.54 -0.06 -2.46 16 8 H 0.11 3.37 7.67 -2.39 -0.02 3.36 16 9 C -0.12 -2.70 9.56 30.60 0.29 -2.41 16 10 C -0.19 -5.83 5.82 -11.54 -0.07 -5.90 16 11 H 0.12 3.83 8.14 -2.39 -0.02 3.81 16 12 C 0.54 19.96 7.61 87.66 0.67 20.63 16 13 O -0.59 -25.01 16.26 -3.04 -0.05 -25.06 16 14 N -0.69 -25.89 3.80 -463.07 -1.76 -27.65 16 15 C 0.14 5.14 4.44 86.38 0.38 5.53 16 16 C 0.13 4.78 3.20 44.97 0.14 4.93 16 17 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 18 C 0.06 1.89 6.29 72.08 0.45 2.34 16 19 O -0.40 -14.48 10.74 -148.98 -1.60 -16.08 16 20 C 0.05 1.70 6.98 72.08 0.50 2.21 16 21 C 0.15 6.76 5.38 86.35 0.46 7.22 16 22 N -0.61 -27.67 3.03 -673.75 -2.04 -29.72 16 23 C -0.24 -11.87 7.11 84.03 0.60 -11.28 16 24 H 0.07 3.36 5.81 -2.91 -0.02 3.34 16 25 C -0.03 -1.44 5.06 84.86 0.43 -1.01 16 26 N -0.92 -50.34 11.13 21.65 0.24 -50.10 16 27 Si 0.94 43.77 29.57 68.60 2.03 45.79 16 28 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 29 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 30 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 31 C -0.13 -3.53 9.39 22.27 0.21 -3.32 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 34 H 0.06 1.11 8.09 -2.39 -0.02 1.09 16 35 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 37 H 0.14 2.65 6.02 -2.91 -0.02 2.64 16 38 H 0.13 2.34 6.18 -2.38 -0.01 2.32 16 39 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.41 16.21 7.38 -92.71 -0.68 15.52 16 41 H 0.08 2.57 8.14 -2.39 -0.02 2.56 16 42 H 0.05 1.91 7.53 -2.38 -0.02 1.89 16 43 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 44 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 46 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 48 H 0.07 3.34 6.32 -2.39 -0.02 3.33 16 49 H 0.25 13.41 8.31 -92.71 -0.77 12.64 16 50 H 0.12 3.07 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -63.90 399.78 2.22 -61.67 By element: Atomic # 1 Polarization: 37.27 SS G_CDS: 0.26 Total: 37.53 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 5.14 Total: 3.61 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -3.56 Total: -107.47 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -1.65 Total: -41.14 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -63.90 2.22 -61.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051159924.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.227 kcal (2) G-P(sol) polarization free energy of solvation -63.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds