Wall clock time and date at job start Wed Apr 1 2020 04:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38253 * 120.00071 * 2 1 4 4 C 1.38216 * 120.00078 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00145 * 359.97438 * 4 3 2 6 6 C 1.38221 * 119.99720 * 359.81336 * 5 4 3 7 7 C 1.38215 * 120.00053 * 180.02562 * 2 1 3 8 8 C 1.50696 * 119.99888 * 359.97438 * 7 2 1 9 9 H 1.08997 * 115.55440 * 334.32659 * 8 7 2 10 10 C 1.53078 * 117.49170 * 188.60187 * 8 7 2 11 11 C 1.52996 * 117.49920 * 120.00193 * 8 7 2 12 12 H 1.09000 * 117.50264 * 359.97289 * 11 8 7 13 13 C 1.50699 * 117.50079 * 214.97681 * 11 8 7 14 14 O 1.21284 * 120.00148 * 0.08658 * 13 11 8 15 15 N 1.34779 * 120.00441 * 180.08189 * 13 11 8 16 16 C 1.46496 * 120.00307 * 180.02562 * 15 13 11 17 17 C 1.53002 * 109.47101 * 180.02562 * 16 15 13 18 18 H 1.08999 * 109.70991 * 60.29986 * 17 16 15 19 19 C 1.53719 * 109.74441 * 181.06592 * 17 16 15 20 20 O 1.42967 * 109.14299 * 172.16464 * 19 17 16 21 21 C 1.42961 * 114.16696 * 297.28872 * 20 19 17 22 22 C 1.53304 * 109.22277 * 62.58489 * 21 20 19 23 23 N 1.47149 * 108.37981 * 307.69581 * 22 21 20 24 24 C 1.36940 * 120.98062 * 230.50730 * 23 22 21 25 25 H 1.07997 * 119.99860 * 147.65989 * 24 23 22 26 26 C 1.38804 * 119.99973 * 327.66362 * 24 23 22 27 27 N 1.31619 * 120.00124 * 337.70301 * 26 24 23 28 28 Si 1.86809 * 120.00054 * 157.70402 * 26 24 23 29 29 H 1.48501 * 109.46883 * 179.97438 * 28 26 24 30 30 H 1.48495 * 109.46814 * 299.99712 * 28 26 24 31 31 H 1.48504 * 109.46886 * 59.99925 * 28 26 24 32 32 H 1.09000 * 109.46972 * 269.97502 * 1 2 3 33 33 H 1.08993 * 109.47245 * 29.97645 * 1 2 3 34 34 H 1.09006 * 109.47292 * 149.98626 * 1 2 3 35 35 H 1.08001 * 119.99578 * 359.97438 * 3 2 1 36 36 H 1.07998 * 119.99571 * 180.02562 * 4 3 2 37 37 H 1.08001 * 120.00299 * 180.02562 * 5 4 3 38 38 H 1.08001 * 119.99763 * 180.23050 * 6 5 4 39 39 H 1.09004 * 117.51310 * 145.03620 * 10 8 7 40 40 H 1.08996 * 117.49533 * 359.97438 * 10 8 7 41 41 H 0.97005 * 119.99544 * 0.02562 * 15 13 11 42 42 H 1.08997 * 109.47271 * 59.99915 * 16 15 13 43 43 H 1.09005 * 109.46914 * 300.00171 * 16 15 13 44 44 H 1.09001 * 109.65245 * 52.20287 * 19 17 16 45 45 H 1.09000 * 109.48639 * 292.02656 * 19 17 16 46 46 H 1.08999 * 109.51351 * 302.65980 * 21 20 19 47 47 H 1.09001 * 109.55477 * 182.53099 * 21 20 19 48 48 H 1.08996 * 109.68289 * 187.97513 * 22 21 20 49 49 H 1.08994 * 109.67972 * 67.41529 * 22 21 20 50 50 H 0.96996 * 120.00001 * 354.43684 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5806 -1.1970 0.0060 7 6 2.1981 -1.1970 -0.0005 8 6 1.4446 -2.5020 -0.0005 9 1 0.4421 -2.4662 0.4259 10 6 2.2541 -3.7854 0.2020 11 6 1.6786 -3.4529 -1.1761 12 1 2.3772 -3.1343 -1.9498 13 6 0.5056 -4.2685 -1.6556 14 8 -0.5736 -4.1555 -1.1136 15 7 0.6555 -5.1234 -2.6867 16 6 -0.4849 -5.9158 -3.1531 17 6 -0.0480 -6.7981 -4.3242 18 1 0.7460 -7.4714 -4.0010 19 6 -1.2467 -7.6130 -4.8359 20 8 -0.8737 -8.2914 -6.0378 21 6 -0.5261 -7.4211 -7.1174 22 6 0.7042 -6.5954 -6.7241 23 7 0.4369 -5.9535 -5.4272 24 6 0.6391 -4.6107 -5.2504 25 1 0.0099 -4.0547 -4.5711 26 6 1.6526 -3.9641 -5.9442 27 7 2.6728 -4.6520 -6.4116 28 14 1.5687 -2.1176 -6.2147 29 1 2.7636 -1.6743 -6.9769 30 1 0.3409 -1.7849 -6.9806 31 1 1.5355 -1.4260 -4.9010 32 1 -0.3633 -0.0004 1.0277 33 1 -0.3633 0.8901 -0.5134 34 1 -0.3634 -0.8899 -0.5141 35 1 1.6582 2.1326 -0.0004 36 1 4.1203 2.1326 0.0010 37 1 5.3517 0.0000 0.0024 38 1 4.1206 -2.1323 0.0106 39 1 1.7842 -4.5940 0.7619 40 1 3.3313 -3.6852 0.3347 41 1 1.5187 -5.2139 -3.1199 42 1 -1.2825 -5.2480 -3.4786 43 1 -0.8470 -6.5449 -2.3399 44 1 -2.0838 -6.9452 -5.0396 45 1 -1.5388 -8.3433 -4.0813 46 1 -1.3606 -6.7527 -7.3293 47 1 -0.2992 -8.0126 -8.0044 48 1 0.8912 -5.8324 -7.4797 49 1 1.5725 -7.2486 -6.6383 50 1 2.7580 -5.5954 -6.2028 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051164026.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:59 Heat of formation + Delta-G solvation = -9.908289 kcal Electronic energy + Delta-G solvation = -30868.419942 eV Core-core repulsion = 26861.880896 eV Total energy + Delta-G solvation = -4006.539046 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.17726 -39.19516 -38.48250 -36.31723 -35.32261 -33.78355 -32.82868 -31.60178 -30.61120 -30.39801 -27.21034 -26.89570 -26.03512 -24.00836 -23.50245 -23.27231 -21.74937 -21.40438 -20.22472 -19.81211 -19.38058 -17.60836 -17.05151 -16.30651 -15.92706 -15.73303 -15.35530 -15.12093 -14.91925 -14.77122 -14.42048 -14.07324 -13.89620 -13.81517 -13.70616 -13.56806 -13.16170 -13.06715 -12.71105 -12.32420 -12.23961 -12.13207 -11.97068 -11.89286 -11.76252 -11.27825 -11.14332 -10.87868 -10.81255 -10.63056 -10.59863 -10.52165 -10.31965 -10.20788 -10.05676 -9.55083 -9.46681 -9.08834 -8.75652 -8.57591 -8.42980 -8.28536 -7.00482 -6.16412 -3.45962 1.30272 1.39032 2.94703 3.41154 3.44281 3.58731 3.60943 3.75926 4.16493 4.33304 4.44587 4.65364 4.78979 4.89324 4.94375 4.95037 5.01743 5.03996 5.23503 5.27187 5.33410 5.47577 5.48884 5.55287 5.59569 5.63945 5.67918 5.70496 5.74324 5.87222 5.89179 5.96169 5.99500 6.05337 6.08295 6.09346 6.13999 6.16079 6.22533 6.33886 6.49880 6.52629 6.55445 6.70183 6.74696 6.93477 7.01168 7.08488 7.67211 7.90914 8.19578 8.42364 8.80780 8.89292 9.65060 10.10526 11.06459 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013058 B = 0.003355 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.746766 B = 8344.040619 C = 9484.501540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.074 4.074 3 C -0.121 4.121 4 C -0.123 4.123 5 C -0.124 4.124 6 C -0.115 4.115 7 C -0.050 4.050 8 C -0.087 4.087 9 H 0.127 0.873 10 C -0.148 4.148 11 C -0.168 4.168 12 H 0.126 0.874 13 C 0.539 3.461 14 O -0.566 6.566 15 N -0.686 5.686 16 C 0.139 3.861 17 C 0.126 3.874 18 H 0.040 0.960 19 C 0.056 3.944 20 O -0.390 6.390 21 C 0.042 3.958 22 C 0.122 3.878 23 N -0.598 5.598 24 C -0.351 4.351 25 H 0.064 0.936 26 C -0.014 4.014 27 N -0.911 5.911 28 Si 1.055 2.945 29 H -0.285 1.285 30 H -0.293 1.293 31 H -0.289 1.289 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.415 0.585 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.048 0.952 45 H 0.084 0.916 46 H 0.045 0.955 47 H 0.082 0.918 48 H 0.082 0.918 49 H 0.027 0.973 50 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.164 4.276 11.258 12.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.074 4.074 3 C -0.139 4.139 4 C -0.141 4.141 5 C -0.142 4.142 6 C -0.133 4.133 7 C -0.050 4.050 8 C -0.106 4.106 9 H 0.145 0.855 10 C -0.185 4.185 11 C -0.189 4.189 12 H 0.144 0.856 13 C 0.324 3.676 14 O -0.446 6.446 15 N -0.336 5.336 16 C 0.015 3.985 17 C 0.019 3.981 18 H 0.057 0.943 19 C -0.023 4.023 20 O -0.309 6.309 21 C -0.036 4.036 22 C -0.003 4.003 23 N -0.325 5.325 24 C -0.480 4.480 25 H 0.081 0.919 26 C -0.218 4.218 27 N -0.550 5.550 28 Si 0.884 3.116 29 H -0.210 1.210 30 H -0.220 1.220 31 H -0.216 1.216 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.253 0.747 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.102 0.898 46 H 0.063 0.937 47 H 0.100 0.900 48 H 0.100 0.900 49 H 0.045 0.955 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.167 5.443 10.849 12.139 hybrid contribution -0.247 -0.939 0.273 1.008 sum -0.080 4.504 11.122 12.000 Atomic orbital electron populations 1.20871 0.91097 1.03487 1.02262 1.19748 0.96245 0.92352 0.99065 1.21003 0.94274 0.97315 1.01285 1.21098 0.94299 0.97978 1.00726 1.21077 0.99744 0.92454 1.00943 1.21069 0.93585 0.98378 1.00278 1.19023 0.93042 0.92852 1.00061 1.21061 1.00566 0.87732 1.01203 0.85530 1.23100 1.00055 0.98669 0.96690 1.22359 1.00569 1.02672 0.93319 0.85565 1.19447 0.88362 0.79781 0.79963 1.90620 1.27647 1.67897 1.58473 1.45887 1.14809 1.40725 1.32135 1.21096 0.89360 0.93456 0.94588 1.21511 0.95106 0.92398 0.89070 0.94291 1.22960 0.96389 0.95938 0.87058 1.87812 1.88009 1.33702 1.21375 1.23173 0.98437 0.93233 0.88781 1.21583 0.93682 0.95655 0.89426 1.44190 1.78806 1.05079 1.04377 1.19967 1.14297 0.83152 1.30553 0.91860 1.25833 0.91502 1.05775 0.98687 1.70800 1.26712 1.10951 1.46495 0.83654 0.75860 0.75395 0.76656 1.21018 1.21962 1.21599 0.91222 0.91656 0.90475 0.86163 0.86287 0.86164 0.85811 0.87974 0.87698 0.74703 0.91553 0.92460 0.93319 0.89774 0.93693 0.89990 0.89994 0.95458 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 9.33 36.00 0.34 -1.12 16 2 C -0.07 -0.98 5.88 -104.63 -0.62 -1.59 16 3 C -0.12 -1.43 9.70 -39.58 -0.38 -1.81 16 4 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 5 C -0.12 -1.43 10.05 -39.58 -0.40 -1.82 16 6 C -0.12 -1.44 9.30 -39.58 -0.37 -1.81 16 7 C -0.05 -0.68 5.61 -104.63 -0.59 -1.27 16 8 C -0.09 -1.23 4.66 -91.74 -0.43 -1.66 16 9 H 0.13 1.88 6.43 -51.93 -0.33 1.55 16 10 C -0.15 -1.86 9.57 -26.69 -0.26 -2.11 16 11 C -0.17 -2.65 5.82 -91.77 -0.53 -3.18 16 12 H 0.13 2.08 8.14 -51.93 -0.42 1.65 16 13 C 0.54 10.05 7.61 -10.98 -0.08 9.97 16 14 O -0.57 -11.81 16.26 5.55 0.09 -11.72 16 15 N -0.69 -13.02 3.78 -60.29 -0.23 -13.25 16 16 C 0.14 2.60 4.46 -4.04 -0.02 2.58 16 17 C 0.13 2.43 3.23 -67.20 -0.22 2.21 16 18 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 19 C 0.06 0.97 6.31 37.53 0.24 1.21 16 20 O -0.39 -7.40 10.74 -35.23 -0.38 -7.78 16 21 C 0.04 0.78 6.99 37.31 0.26 1.04 16 22 C 0.12 2.66 4.91 -3.53 -0.02 2.65 16 23 N -0.60 -13.47 2.83 -164.06 -0.46 -13.93 16 24 C -0.35 -8.64 6.86 -15.06 -0.10 -8.74 16 25 H 0.06 1.63 5.96 -52.49 -0.31 1.32 16 26 C -0.01 -0.37 4.75 -17.43 -0.08 -0.45 16 27 N -0.91 -24.93 12.64 55.49 0.70 -24.23 16 28 Si 1.05 24.26 29.97 -169.99 -5.10 19.17 16 29 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 30 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 31 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 34 H 0.08 1.07 6.65 -51.93 -0.35 0.72 16 35 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.12 1.36 6.01 -52.49 -0.32 1.04 16 39 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.10 1.10 6.17 -51.93 -0.32 0.78 16 41 H 0.42 8.31 7.28 -40.82 -0.30 8.01 16 42 H 0.07 1.36 7.58 -51.93 -0.39 0.97 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 48 H 0.08 1.97 6.79 -51.93 -0.35 1.62 16 49 H 0.03 0.62 7.70 -51.93 -0.40 0.22 16 50 H 0.27 7.43 6.61 -40.82 -0.27 7.16 16 LS Contribution 395.35 15.07 5.96 5.96 Total: -1.00 -29.48 395.35 -10.70 -40.18 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -7.63 Total: 13.30 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -3.66 Total: -7.70 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: 0.01 Total: -51.41 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.29 Total: -19.50 kcal Atomic # 14 Polarization: 24.26 SS G_CDS: -5.10 Total: 19.17 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.48 -10.70 -40.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051164026.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.276 kcal (2) G-P(sol) polarization free energy of solvation -29.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds