Wall clock time and date at job start Wed Apr 1 2020 04:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38253 * 120.00071 * 2 1 4 4 C 1.38216 * 120.00078 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00145 * 359.97438 * 4 3 2 6 6 C 1.38221 * 119.99720 * 359.81336 * 5 4 3 7 7 C 1.38215 * 120.00053 * 180.02562 * 2 1 3 8 8 C 1.50696 * 119.99888 * 359.97438 * 7 2 1 9 9 H 1.08997 * 115.55440 * 334.32659 * 8 7 2 10 10 C 1.53078 * 117.49170 * 188.60187 * 8 7 2 11 11 C 1.52996 * 117.49920 * 120.00193 * 8 7 2 12 12 H 1.09000 * 117.50264 * 359.97289 * 11 8 7 13 13 C 1.50699 * 117.50079 * 214.97681 * 11 8 7 14 14 O 1.21284 * 120.00148 * 0.08658 * 13 11 8 15 15 N 1.34779 * 120.00441 * 180.08189 * 13 11 8 16 16 C 1.46496 * 120.00307 * 180.02562 * 15 13 11 17 17 C 1.53002 * 109.47101 * 180.02562 * 16 15 13 18 18 H 1.08999 * 109.70991 * 60.29986 * 17 16 15 19 19 C 1.53719 * 109.74441 * 181.06592 * 17 16 15 20 20 O 1.42967 * 109.14299 * 172.16464 * 19 17 16 21 21 C 1.42961 * 114.16696 * 297.28872 * 20 19 17 22 22 C 1.53304 * 109.22277 * 62.58489 * 21 20 19 23 23 N 1.47149 * 108.37981 * 307.69581 * 22 21 20 24 24 C 1.36940 * 120.98062 * 230.50730 * 23 22 21 25 25 H 1.07997 * 119.99860 * 147.65989 * 24 23 22 26 26 C 1.38804 * 119.99973 * 327.66362 * 24 23 22 27 27 N 1.31619 * 120.00124 * 337.70301 * 26 24 23 28 28 Si 1.86809 * 120.00054 * 157.70402 * 26 24 23 29 29 H 1.48501 * 109.46883 * 179.97438 * 28 26 24 30 30 H 1.48495 * 109.46814 * 299.99712 * 28 26 24 31 31 H 1.48504 * 109.46886 * 59.99925 * 28 26 24 32 32 H 1.09000 * 109.46972 * 269.97502 * 1 2 3 33 33 H 1.08993 * 109.47245 * 29.97645 * 1 2 3 34 34 H 1.09006 * 109.47292 * 149.98626 * 1 2 3 35 35 H 1.08001 * 119.99578 * 359.97438 * 3 2 1 36 36 H 1.07998 * 119.99571 * 180.02562 * 4 3 2 37 37 H 1.08001 * 120.00299 * 180.02562 * 5 4 3 38 38 H 1.08001 * 119.99763 * 180.23050 * 6 5 4 39 39 H 1.09004 * 117.51310 * 145.03620 * 10 8 7 40 40 H 1.08996 * 117.49533 * 359.97438 * 10 8 7 41 41 H 0.97005 * 119.99544 * 0.02562 * 15 13 11 42 42 H 1.08997 * 109.47271 * 59.99915 * 16 15 13 43 43 H 1.09005 * 109.46914 * 300.00171 * 16 15 13 44 44 H 1.09001 * 109.65245 * 52.20287 * 19 17 16 45 45 H 1.09000 * 109.48639 * 292.02656 * 19 17 16 46 46 H 1.08999 * 109.51351 * 302.65980 * 21 20 19 47 47 H 1.09001 * 109.55477 * 182.53099 * 21 20 19 48 48 H 1.08996 * 109.68289 * 187.97513 * 22 21 20 49 49 H 1.08994 * 109.67972 * 67.41529 * 22 21 20 50 50 H 0.96996 * 120.00001 * 354.43684 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5806 -1.1970 0.0060 7 6 2.1981 -1.1970 -0.0005 8 6 1.4446 -2.5020 -0.0005 9 1 0.4421 -2.4662 0.4259 10 6 2.2541 -3.7854 0.2020 11 6 1.6786 -3.4529 -1.1761 12 1 2.3772 -3.1343 -1.9498 13 6 0.5056 -4.2685 -1.6556 14 8 -0.5736 -4.1555 -1.1136 15 7 0.6555 -5.1234 -2.6867 16 6 -0.4849 -5.9158 -3.1531 17 6 -0.0480 -6.7981 -4.3242 18 1 0.7460 -7.4714 -4.0010 19 6 -1.2467 -7.6130 -4.8359 20 8 -0.8737 -8.2914 -6.0378 21 6 -0.5261 -7.4211 -7.1174 22 6 0.7042 -6.5954 -6.7241 23 7 0.4369 -5.9535 -5.4272 24 6 0.6391 -4.6107 -5.2504 25 1 0.0099 -4.0547 -4.5711 26 6 1.6526 -3.9641 -5.9442 27 7 2.6728 -4.6520 -6.4116 28 14 1.5687 -2.1176 -6.2147 29 1 2.7636 -1.6743 -6.9769 30 1 0.3409 -1.7849 -6.9806 31 1 1.5355 -1.4260 -4.9010 32 1 -0.3633 -0.0004 1.0277 33 1 -0.3633 0.8901 -0.5134 34 1 -0.3634 -0.8899 -0.5141 35 1 1.6582 2.1326 -0.0004 36 1 4.1203 2.1326 0.0010 37 1 5.3517 0.0000 0.0024 38 1 4.1206 -2.1323 0.0106 39 1 1.7842 -4.5940 0.7619 40 1 3.3313 -3.6852 0.3347 41 1 1.5187 -5.2139 -3.1199 42 1 -1.2825 -5.2480 -3.4786 43 1 -0.8470 -6.5449 -2.3399 44 1 -2.0838 -6.9452 -5.0396 45 1 -1.5388 -8.3433 -4.0813 46 1 -1.3606 -6.7527 -7.3293 47 1 -0.2992 -8.0126 -8.0044 48 1 0.8912 -5.8324 -7.4797 49 1 1.5725 -7.2486 -6.6383 50 1 2.7580 -5.5954 -6.2028 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051164026.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:58 Heat of formation + Delta-G solvation = -25.406006 kcal Electronic energy + Delta-G solvation = -30869.091974 eV Core-core repulsion = 26861.880896 eV Total energy + Delta-G solvation = -4007.211078 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.39129 -40.53580 -39.90808 -37.55472 -36.89134 -35.49557 -33.74490 -33.27783 -32.19589 -31.47712 -28.93428 -27.89856 -27.47607 -25.22562 -25.00678 -24.69523 -23.29131 -22.33500 -21.50483 -21.29521 -20.78640 -19.30192 -18.36938 -17.51802 -17.38505 -17.31128 -16.71145 -16.53868 -16.21967 -15.88046 -15.67377 -15.64692 -15.45892 -15.38076 -14.98380 -14.77039 -14.67081 -14.34145 -13.97051 -13.67479 -13.57293 -13.36872 -13.19230 -13.06195 -12.95749 -12.82752 -12.63595 -12.27064 -12.16645 -12.09388 -12.02577 -11.87842 -11.83346 -11.60345 -11.43022 -11.22583 -11.02478 -10.73329 -10.46408 -9.90752 -9.67094 -9.39076 -8.90137 -8.15818 -5.44930 0.36248 0.48344 1.52925 1.54476 1.57517 1.75110 2.24883 2.55056 2.66317 2.90889 3.07312 3.18000 3.34831 3.56714 3.71861 3.83595 3.92196 3.93305 4.01127 4.10107 4.14820 4.18519 4.24559 4.26490 4.30971 4.43597 4.43723 4.50745 4.54295 4.62794 4.64220 4.72167 4.75392 4.76781 4.81081 4.92055 4.93387 4.95595 5.06532 5.10393 5.17263 5.22089 5.29531 5.54340 5.59921 5.62164 5.75305 5.92120 6.12893 6.17800 6.39828 6.65934 6.97515 7.28294 7.71073 8.18181 9.03310 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013058 B = 0.003355 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.746766 B = 8344.040619 C = 9484.501540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.095 4.095 3 C -0.129 4.129 4 C -0.125 4.125 5 C -0.131 4.131 6 C -0.125 4.125 7 C -0.072 4.072 8 C -0.081 4.081 9 H 0.114 0.886 10 C -0.121 4.121 11 C -0.188 4.188 12 H 0.117 0.883 13 C 0.537 3.463 14 O -0.591 6.591 15 N -0.689 5.689 16 C 0.145 3.855 17 C 0.127 3.873 18 H 0.038 0.962 19 C 0.058 3.942 20 O -0.394 6.394 21 C 0.052 3.948 22 C 0.127 3.873 23 N -0.612 5.612 24 C -0.330 4.330 25 H 0.052 0.948 26 C -0.054 4.054 27 N -0.937 5.937 28 Si 1.091 2.909 29 H -0.291 1.291 30 H -0.287 1.287 31 H -0.284 1.284 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.140 0.860 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.136 0.864 39 H 0.108 0.892 40 H 0.130 0.870 41 H 0.410 0.590 42 H 0.045 0.955 43 H 0.079 0.921 44 H 0.048 0.952 45 H 0.119 0.881 46 H 0.045 0.955 47 H 0.110 0.890 48 H 0.055 0.945 49 H 0.014 0.986 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.339 4.578 12.334 13.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.142 4.142 5 C -0.149 4.149 6 C -0.143 4.143 7 C -0.072 4.072 8 C -0.100 4.100 9 H 0.132 0.868 10 C -0.158 4.158 11 C -0.210 4.210 12 H 0.135 0.865 13 C 0.325 3.675 14 O -0.474 6.474 15 N -0.338 5.338 16 C 0.020 3.980 17 C 0.021 3.979 18 H 0.055 0.945 19 C -0.020 4.020 20 O -0.312 6.312 21 C -0.026 4.026 22 C 0.001 3.999 23 N -0.339 5.339 24 C -0.460 4.460 25 H 0.070 0.930 26 C -0.253 4.253 27 N -0.578 5.578 28 Si 0.918 3.082 29 H -0.217 1.217 30 H -0.214 1.214 31 H -0.210 1.210 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.158 0.842 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.154 0.846 39 H 0.127 0.873 40 H 0.148 0.852 41 H 0.246 0.754 42 H 0.064 0.936 43 H 0.097 0.903 44 H 0.067 0.933 45 H 0.137 0.863 46 H 0.063 0.937 47 H 0.128 0.872 48 H 0.073 0.927 49 H 0.032 0.968 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.319 5.728 11.935 13.242 hybrid contribution -0.327 -1.030 -0.006 1.081 sum -0.009 4.698 11.929 12.821 Atomic orbital electron populations 1.20834 0.90897 1.02713 1.02887 1.20000 0.96748 0.92971 0.99749 1.21299 0.94931 0.97572 1.00845 1.21485 0.94242 0.99108 0.99410 1.21433 1.01072 0.92179 1.00175 1.21297 0.93220 0.99569 1.00218 1.19125 0.93771 0.92642 1.01670 1.21000 1.00544 0.88763 0.99679 0.86775 1.23248 1.01370 0.97783 0.93406 1.22241 1.00004 1.04253 0.94456 0.86528 1.19904 0.88837 0.79408 0.79388 1.90596 1.28825 1.68699 1.59260 1.45933 1.14508 1.41079 1.32281 1.21060 0.88682 0.93166 0.95051 1.21638 0.95794 0.92133 0.88335 0.94474 1.23062 0.95082 0.96586 0.87318 1.87819 1.87833 1.33843 1.21725 1.23084 0.96577 0.93257 0.89672 1.21470 0.94917 0.94989 0.88510 1.44385 1.78809 1.04946 1.05784 1.19902 1.12817 0.84212 1.29056 0.93048 1.26593 0.91519 1.07885 0.99309 1.70883 1.27987 1.10453 1.48489 0.83132 0.75564 0.72841 0.76623 1.21746 1.21399 1.21048 0.89945 0.90547 0.92994 0.84217 0.83653 0.83858 0.84625 0.87341 0.85208 0.75379 0.93630 0.90281 0.93342 0.86286 0.93654 0.87224 0.92664 0.96756 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.80 9.33 71.24 0.66 -2.14 16 2 C -0.09 -2.44 5.88 -19.87 -0.12 -2.56 16 3 C -0.13 -2.82 9.70 22.27 0.22 -2.61 16 4 C -0.12 -2.48 10.05 22.27 0.22 -2.26 16 5 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 6 C -0.13 -2.96 9.30 22.27 0.21 -2.75 16 7 C -0.07 -1.94 5.61 -19.87 -0.11 -2.05 16 8 C -0.08 -2.30 4.66 -11.52 -0.05 -2.35 16 9 H 0.11 3.48 6.43 -2.39 -0.02 3.47 16 10 C -0.12 -2.91 9.57 30.62 0.29 -2.61 16 11 C -0.19 -5.98 5.82 -11.54 -0.07 -6.05 16 12 H 0.12 3.92 8.14 -2.39 -0.02 3.90 16 13 C 0.54 20.34 7.61 87.66 0.67 21.00 16 14 O -0.59 -25.06 16.26 -3.04 -0.05 -25.11 16 15 N -0.69 -26.48 3.78 -463.06 -1.75 -28.23 16 16 C 0.14 5.35 4.46 86.38 0.39 5.73 16 17 C 0.13 4.81 3.23 45.11 0.15 4.95 16 18 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 19 C 0.06 1.90 6.31 72.22 0.46 2.36 16 20 O -0.39 -14.07 10.74 -148.98 -1.60 -15.67 16 21 C 0.05 1.86 6.99 72.08 0.50 2.37 16 22 C 0.13 5.56 4.91 86.36 0.42 5.99 16 23 N -0.61 -27.73 2.83 -672.96 -1.91 -29.64 16 24 C -0.33 -16.49 6.86 84.03 0.58 -15.91 16 25 H 0.05 2.70 5.96 -2.91 -0.02 2.68 16 26 C -0.05 -2.83 4.75 84.86 0.40 -2.43 16 27 N -0.94 -52.42 12.64 21.65 0.27 -52.14 16 28 Si 1.09 49.81 29.97 68.60 2.06 51.87 16 29 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 30 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 31 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 32 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.08 1.60 8.08 -2.39 -0.02 1.58 16 34 H 0.05 1.49 6.65 -2.38 -0.02 1.47 16 35 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 36 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 37 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 38 H 0.14 2.72 6.01 -2.91 -0.02 2.70 16 39 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.13 2.45 6.17 -2.39 -0.01 2.43 16 41 H 0.41 16.73 7.28 -92.70 -0.67 16.05 16 42 H 0.05 1.88 7.58 -2.39 -0.02 1.86 16 43 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 44 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 46 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 48 H 0.05 2.71 6.79 -2.39 -0.02 2.69 16 49 H 0.01 0.66 7.70 -2.39 -0.02 0.65 16 50 H 0.26 14.68 6.61 -92.71 -0.61 14.07 16 Total: -1.00 -64.16 395.35 2.50 -61.66 By element: Atomic # 1 Polarization: 40.63 SS G_CDS: 0.44 Total: 41.06 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 5.04 Total: -3.80 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -3.38 Total: -110.02 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -1.65 Total: -40.78 kcal Atomic # 14 Polarization: 49.81 SS G_CDS: 2.06 Total: 51.87 kcal Total: -64.16 2.50 -61.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051164026.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.252 kcal (2) G-P(sol) polarization free energy of solvation -64.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds