Wall clock time and date at job start Wed Apr 1 2020 02:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38229 * 119.99890 * 2 1 4 4 C 1.38247 * 119.99833 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.99955 * 179.97438 * 4 3 2 6 6 C 1.38233 * 119.99599 * 359.97438 * 4 3 2 7 7 C 1.38232 * 120.00353 * 359.97438 * 6 4 3 8 8 C 1.50699 * 120.00097 * 179.97438 * 7 6 4 9 9 C 1.50698 * 109.46799 * 90.00455 * 8 7 6 10 10 O 1.21280 * 120.00466 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99629 * 180.02562 * 9 8 7 12 12 C 1.47137 * 121.06132 * 0.02562 * 11 9 8 13 13 C 1.53223 * 108.72646 * 127.68522 * 12 11 9 14 14 O 1.43118 * 109.35471 * 54.19296 * 13 12 11 15 15 C 1.42353 * 113.99314 * 300.22319 * 14 13 12 16 16 C 1.52915 * 114.29884 * 285.04719 * 15 14 13 17 17 N 1.47166 * 87.84964 * 271.72443 * 16 15 14 18 18 C 1.36930 * 136.00334 * 153.32674 * 17 16 15 19 19 H 1.08004 * 119.99699 * 354.27155 * 18 17 16 20 20 C 1.38812 * 120.00284 * 174.27329 * 18 17 16 21 21 N 1.31615 * 120.00368 * 185.32852 * 20 18 17 22 22 Si 1.86805 * 119.99570 * 5.33572 * 20 18 17 23 23 H 1.48503 * 109.46598 * 185.37040 * 22 20 18 24 24 H 1.48495 * 109.47085 * 305.36485 * 22 20 18 25 25 H 1.48494 * 109.47362 * 65.36705 * 22 20 18 26 26 C 1.47183 * 87.99696 * 333.57662 * 17 16 15 27 27 C 1.47358 * 121.06000 * 179.97438 * 11 9 8 28 28 C 1.38233 * 119.99735 * 180.27084 * 2 1 3 29 29 H 1.08993 * 109.47045 * 90.00106 * 1 2 3 30 30 H 1.08994 * 109.47481 * 210.00466 * 1 2 3 31 31 H 1.09006 * 109.46983 * 330.00902 * 1 2 3 32 32 H 1.07995 * 120.00417 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.46877 * 270.01700 * 5 4 3 34 34 H 1.09002 * 109.47486 * 30.01764 * 5 4 3 35 35 H 1.08992 * 109.47469 * 150.02213 * 5 4 3 36 36 H 1.07996 * 119.99843 * 179.97438 * 6 4 3 37 37 H 1.09004 * 109.47117 * 330.00356 * 8 7 6 38 38 H 1.09001 * 109.46973 * 210.00148 * 8 7 6 39 39 H 1.08997 * 109.59329 * 247.45378 * 12 11 9 40 40 H 1.08991 * 109.59640 * 7.91261 * 12 11 9 41 41 H 1.08996 * 109.49198 * 174.15950 * 13 12 11 42 42 H 1.09000 * 109.48909 * 294.23331 * 13 12 11 43 43 H 1.09000 * 113.49392 * 156.97408 * 16 15 14 44 44 H 1.09004 * 113.48835 * 26.46712 * 16 15 14 45 45 H 0.97002 * 119.99753 * 354.99129 * 21 20 18 46 46 H 1.08993 * 113.48874 * 141.16922 * 26 17 16 47 47 H 1.08999 * 113.49290 * 271.68301 * 26 17 16 48 48 H 1.09004 * 109.74635 * 108.63092 * 27 11 9 49 49 H 1.09000 * 109.79022 * 347.93550 * 27 11 9 50 50 H 1.08007 * 120.00098 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3341 2.5022 -0.0011 6 6 4.2717 -0.0001 -0.0005 7 6 3.5805 -1.1972 0.0005 8 6 4.3340 -2.5023 0.0000 9 6 4.5866 -2.9370 1.4206 10 8 4.1932 -2.2546 2.3427 11 7 5.2499 -4.0843 1.6663 12 6 5.7380 -4.9298 0.5655 13 6 7.2278 -5.2123 0.7855 14 8 7.4177 -5.7661 2.0915 15 6 6.9846 -4.9170 3.1488 16 6 7.9168 -3.7382 3.4312 17 7 8.6560 -4.6152 4.3534 18 6 9.9386 -4.6892 4.8270 19 1 10.6975 -4.0275 4.4362 20 6 10.2635 -5.6146 5.8093 21 7 11.4682 -5.6162 6.3394 22 14 8.9909 -6.8579 6.3787 23 1 9.5382 -7.6411 7.5156 24 1 7.7630 -6.1453 6.8141 25 1 8.6599 -7.7756 5.2592 26 6 7.4132 -5.3818 4.5383 27 6 5.5103 -4.5314 3.0461 28 6 2.1982 -1.1971 -0.0057 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5137 32 1 1.6583 2.1324 -0.0004 33 1 4.5151 2.8167 -1.0289 34 1 3.7454 3.2619 0.5130 35 1 5.2869 2.3719 0.5120 36 1 5.3517 -0.0001 -0.0014 37 1 5.2859 -2.3721 -0.5150 38 1 3.7443 -3.2620 -0.5131 39 1 5.1857 -5.8694 0.5537 40 1 5.6006 -4.4105 -0.3828 41 1 7.5782 -5.9213 0.0354 42 1 7.7908 -4.2830 0.6992 43 1 7.4230 -2.9030 3.9279 44 1 8.5007 -3.4287 2.5643 45 1 12.1509 -5.0200 5.9938 46 1 7.5725 -6.4580 4.6049 47 1 6.7810 -4.9980 5.3390 48 1 4.8870 -5.3953 3.2772 49 1 5.2917 -3.7227 3.7435 50 1 1.6581 -2.1325 -0.0097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053404864.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:07 Heat of formation + Delta-G solvation = 14.416882 kcal Electronic energy + Delta-G solvation = -30491.652948 eV Core-core repulsion = 26486.168720 eV Total energy + Delta-G solvation = -4005.484228 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.80036 -39.89503 -38.79343 -36.65010 -34.65188 -33.78165 -33.72306 -32.45558 -30.51692 -29.11910 -27.93310 -27.27153 -26.90339 -25.76074 -25.60193 -23.46212 -21.90752 -20.95800 -20.94106 -19.42372 -18.93851 -17.51285 -17.38118 -16.64645 -16.42956 -16.24965 -15.78491 -15.62982 -14.95590 -14.76900 -14.51705 -14.29884 -14.07047 -13.89419 -13.74880 -13.46378 -13.28819 -13.22661 -13.16648 -13.11085 -13.00042 -12.78097 -12.46654 -12.19326 -11.93333 -11.75157 -11.68383 -11.38916 -11.20735 -11.18521 -11.12677 -10.79842 -10.50459 -10.44964 -9.94880 -9.79700 -9.19607 -9.07199 -8.88537 -8.77550 -8.70550 -8.48330 -7.13008 -6.28747 -3.19667 1.14940 1.21337 2.53482 2.78522 3.43329 3.48370 3.53715 3.66295 3.80341 4.34410 4.45024 4.50746 4.57310 4.59674 4.62723 4.76806 4.81847 4.86341 4.91552 4.95977 5.02584 5.09230 5.11911 5.17185 5.23223 5.30090 5.32673 5.37062 5.39069 5.46705 5.54636 5.59496 5.59912 5.64130 5.70070 5.84711 5.93833 5.99561 6.05162 6.14802 6.18483 6.23875 6.34014 6.34607 6.37558 6.45029 6.49513 6.84768 7.07376 7.26059 7.50497 8.07515 8.25289 8.99742 9.51994 10.35925 11.23992 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018360 B = 0.002498 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.658053 B =11205.669675 C =11648.892852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.084 4.084 3 C -0.122 4.122 4 C -0.082 4.082 5 C -0.114 4.114 6 C -0.109 4.109 7 C -0.057 4.057 8 C -0.101 4.101 9 C 0.518 3.482 10 O -0.528 6.528 11 N -0.614 5.614 12 C 0.072 3.928 13 C 0.045 3.955 14 O -0.335 6.335 15 C 0.058 3.942 16 C 0.107 3.893 17 N -0.619 5.619 18 C -0.299 4.299 19 H 0.082 0.918 20 C -0.025 4.025 21 N -0.935 5.935 22 Si 1.070 2.930 23 H -0.294 1.294 24 H -0.287 1.287 25 H -0.290 1.290 26 C 0.115 3.885 27 C 0.102 3.898 28 C -0.111 4.111 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.119 0.881 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.119 0.881 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.056 0.944 43 H 0.047 0.953 44 H 0.045 0.955 45 H 0.260 0.740 46 H 0.065 0.935 47 H 0.062 0.938 48 H 0.075 0.925 49 H 0.104 0.896 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.366 9.005 -19.562 30.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.084 4.084 3 C -0.140 4.140 4 C -0.082 4.082 5 C -0.171 4.171 6 C -0.128 4.128 7 C -0.057 4.057 8 C -0.141 4.141 9 C 0.305 3.695 10 O -0.403 6.403 11 N -0.349 5.349 12 C -0.051 4.051 13 C -0.033 4.033 14 O -0.253 6.253 15 C 0.016 3.984 16 C -0.020 4.020 17 N -0.346 5.346 18 C -0.425 4.425 19 H 0.100 0.900 20 C -0.223 4.223 21 N -0.578 5.578 22 Si 0.902 3.098 23 H -0.222 1.222 24 H -0.214 1.214 25 H -0.218 1.218 26 C -0.011 4.011 27 C -0.021 4.021 28 C -0.129 4.129 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.137 0.863 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.137 0.863 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.123 0.877 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.093 0.907 49 H 0.123 0.877 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -21.483 7.973 -17.836 29.038 hybrid contribution 0.327 1.415 -1.261 1.924 sum -21.156 9.388 -19.097 30.007 Atomic orbital electron populations 1.20775 0.91251 1.02822 1.02115 1.19824 0.95936 0.93027 0.99578 1.20871 0.93496 0.97433 1.02212 1.19847 0.93808 0.95208 0.99317 1.20788 1.00099 0.94033 1.02174 1.20838 0.99569 0.91448 1.00898 1.19213 0.93476 0.93445 0.99596 1.20703 1.02127 0.96227 0.95019 1.20479 0.77652 0.80059 0.91269 1.90735 1.50450 1.52958 1.46181 1.48219 1.56560 1.22636 1.07474 1.22473 0.96610 0.95836 0.90189 1.22920 0.93714 1.00178 0.86487 1.87997 1.83396 1.41210 1.12686 1.23043 0.90871 0.94175 0.90310 1.22805 0.92104 0.93210 0.93869 1.45793 1.04686 1.30521 1.53639 1.20102 0.82216 1.19989 1.20232 0.90004 1.25734 1.01594 1.00145 0.94864 1.70924 1.03413 1.42533 1.40909 0.83717 0.74252 0.76181 0.75652 1.22183 1.21368 1.21796 1.22639 0.88899 0.98425 0.91168 1.22125 0.95752 1.01031 0.83183 1.20793 0.93273 0.97538 1.01292 0.91296 0.91552 0.91601 0.86312 0.91246 0.91579 0.91405 0.86286 0.87929 0.87986 0.90253 0.88987 0.87704 0.92587 0.93553 0.93655 0.93009 0.91715 0.92018 0.90675 0.87741 0.86417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 36.01 0.36 -0.44 16 2 C -0.08 -0.82 5.88 -104.62 -0.62 -1.44 16 3 C -0.12 -1.19 9.36 -39.58 -0.37 -1.56 16 4 C -0.08 -0.84 5.88 -104.62 -0.62 -1.45 16 5 C -0.11 -0.90 10.01 36.00 0.36 -0.54 16 6 C -0.11 -1.20 9.36 -39.59 -0.37 -1.57 16 7 C -0.06 -0.62 4.37 -104.62 -0.46 -1.07 16 8 C -0.10 -0.92 4.20 -29.04 -0.12 -1.04 16 9 C 0.52 6.76 7.71 -10.98 -0.08 6.67 16 10 O -0.53 -9.06 15.53 5.56 0.09 -8.97 16 11 N -0.61 -7.74 3.03 -172.51 -0.52 -8.26 16 12 C 0.07 0.68 6.50 -3.58 -0.02 0.66 16 13 C 0.04 0.55 6.90 37.27 0.26 0.80 16 14 O -0.34 -5.97 10.53 -35.23 -0.37 -6.34 16 15 C 0.06 1.06 1.27 -90.98 -0.12 0.94 16 16 C 0.11 2.23 7.91 -8.21 -0.06 2.17 16 17 N -0.62 -15.84 3.70 -184.94 -0.68 -16.52 16 18 C -0.30 -8.91 11.08 -15.06 -0.17 -9.08 16 19 H 0.08 2.56 8.05 -52.48 -0.42 2.14 16 20 C -0.03 -0.76 5.50 -17.43 -0.10 -0.86 16 21 N -0.94 -30.13 13.70 55.49 0.76 -29.37 16 22 Si 1.07 27.37 25.15 -169.99 -4.27 23.10 16 23 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 24 H -0.29 -6.76 6.18 56.52 0.35 -6.41 16 25 H -0.29 -7.09 6.53 56.52 0.37 -6.72 16 26 C 0.11 2.50 5.10 -8.34 -0.04 2.46 16 27 C 0.10 1.53 5.83 -3.71 -0.02 1.51 16 28 C -0.11 -1.15 9.36 -39.58 -0.37 -1.52 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 32 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 35 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 36 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.10 0.74 7.63 -51.93 -0.40 0.35 16 38 H 0.10 0.67 7.93 -51.93 -0.41 0.26 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.56 6.03 -51.93 -0.31 0.25 16 41 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 0.71 7.30 -51.93 -0.38 0.33 16 43 H 0.05 0.96 7.93 -51.93 -0.41 0.55 16 44 H 0.05 0.94 7.36 -51.93 -0.38 0.55 16 45 H 0.26 8.27 8.73 -40.82 -0.36 7.91 16 46 H 0.07 1.47 4.69 -51.93 -0.24 1.23 16 47 H 0.06 1.27 7.62 -51.93 -0.40 0.88 16 48 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.10 1.69 6.89 -51.93 -0.36 1.33 16 50 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 395.09 15.07 5.95 5.95 Total: -1.00 -37.19 395.09 -9.62 -46.82 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -8.01 Total: -1.02 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -2.56 Total: -5.38 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.45 Total: -54.15 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.28 Total: -15.31 kcal Atomic # 14 Polarization: 27.37 SS G_CDS: -4.27 Total: 23.10 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.19 -9.62 -46.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053404864.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.233 kcal (2) G-P(sol) polarization free energy of solvation -37.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds