Wall clock time and date at job start Wed Apr 1 2020 02:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38229 * 119.99890 * 2 1 4 4 C 1.38247 * 119.99833 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.99955 * 179.97438 * 4 3 2 6 6 C 1.38233 * 119.99599 * 359.97438 * 4 3 2 7 7 C 1.38232 * 120.00353 * 359.97438 * 6 4 3 8 8 C 1.50699 * 120.00097 * 179.97438 * 7 6 4 9 9 C 1.50698 * 109.46799 * 90.00455 * 8 7 6 10 10 O 1.21280 * 120.00466 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99629 * 180.02562 * 9 8 7 12 12 C 1.47137 * 121.06132 * 0.02562 * 11 9 8 13 13 C 1.53223 * 108.72646 * 127.68522 * 12 11 9 14 14 O 1.43118 * 109.35471 * 54.19296 * 13 12 11 15 15 C 1.42353 * 113.99314 * 300.22319 * 14 13 12 16 16 C 1.52915 * 114.29884 * 285.04719 * 15 14 13 17 17 N 1.47166 * 87.84964 * 271.72443 * 16 15 14 18 18 C 1.36930 * 136.00334 * 153.32674 * 17 16 15 19 19 H 1.08004 * 119.99699 * 354.27155 * 18 17 16 20 20 C 1.38812 * 120.00284 * 174.27329 * 18 17 16 21 21 N 1.31615 * 120.00368 * 185.32852 * 20 18 17 22 22 Si 1.86805 * 119.99570 * 5.33572 * 20 18 17 23 23 H 1.48503 * 109.46598 * 185.37040 * 22 20 18 24 24 H 1.48495 * 109.47085 * 305.36485 * 22 20 18 25 25 H 1.48494 * 109.47362 * 65.36705 * 22 20 18 26 26 C 1.47183 * 87.99696 * 333.57662 * 17 16 15 27 27 C 1.47358 * 121.06000 * 179.97438 * 11 9 8 28 28 C 1.38233 * 119.99735 * 180.27084 * 2 1 3 29 29 H 1.08993 * 109.47045 * 90.00106 * 1 2 3 30 30 H 1.08994 * 109.47481 * 210.00466 * 1 2 3 31 31 H 1.09006 * 109.46983 * 330.00902 * 1 2 3 32 32 H 1.07995 * 120.00417 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.46877 * 270.01700 * 5 4 3 34 34 H 1.09002 * 109.47486 * 30.01764 * 5 4 3 35 35 H 1.08992 * 109.47469 * 150.02213 * 5 4 3 36 36 H 1.07996 * 119.99843 * 179.97438 * 6 4 3 37 37 H 1.09004 * 109.47117 * 330.00356 * 8 7 6 38 38 H 1.09001 * 109.46973 * 210.00148 * 8 7 6 39 39 H 1.08997 * 109.59329 * 247.45378 * 12 11 9 40 40 H 1.08991 * 109.59640 * 7.91261 * 12 11 9 41 41 H 1.08996 * 109.49198 * 174.15950 * 13 12 11 42 42 H 1.09000 * 109.48909 * 294.23331 * 13 12 11 43 43 H 1.09000 * 113.49392 * 156.97408 * 16 15 14 44 44 H 1.09004 * 113.48835 * 26.46712 * 16 15 14 45 45 H 0.97002 * 119.99753 * 354.99129 * 21 20 18 46 46 H 1.08993 * 113.48874 * 141.16922 * 26 17 16 47 47 H 1.08999 * 113.49290 * 271.68301 * 26 17 16 48 48 H 1.09004 * 109.74635 * 108.63092 * 27 11 9 49 49 H 1.09000 * 109.79022 * 347.93550 * 27 11 9 50 50 H 1.08007 * 120.00098 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3341 2.5022 -0.0011 6 6 4.2717 -0.0001 -0.0005 7 6 3.5805 -1.1972 0.0005 8 6 4.3340 -2.5023 0.0000 9 6 4.5866 -2.9370 1.4206 10 8 4.1932 -2.2546 2.3427 11 7 5.2499 -4.0843 1.6663 12 6 5.7380 -4.9298 0.5655 13 6 7.2278 -5.2123 0.7855 14 8 7.4177 -5.7661 2.0915 15 6 6.9846 -4.9170 3.1488 16 6 7.9168 -3.7382 3.4312 17 7 8.6560 -4.6152 4.3534 18 6 9.9386 -4.6892 4.8270 19 1 10.6975 -4.0275 4.4362 20 6 10.2635 -5.6146 5.8093 21 7 11.4682 -5.6162 6.3394 22 14 8.9909 -6.8579 6.3787 23 1 9.5382 -7.6411 7.5156 24 1 7.7630 -6.1453 6.8141 25 1 8.6599 -7.7756 5.2592 26 6 7.4132 -5.3818 4.5383 27 6 5.5103 -4.5314 3.0461 28 6 2.1982 -1.1971 -0.0057 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5137 32 1 1.6583 2.1324 -0.0004 33 1 4.5151 2.8167 -1.0289 34 1 3.7454 3.2619 0.5130 35 1 5.2869 2.3719 0.5120 36 1 5.3517 -0.0001 -0.0014 37 1 5.2859 -2.3721 -0.5150 38 1 3.7443 -3.2620 -0.5131 39 1 5.1857 -5.8694 0.5537 40 1 5.6006 -4.4105 -0.3828 41 1 7.5782 -5.9213 0.0354 42 1 7.7908 -4.2830 0.6992 43 1 7.4230 -2.9030 3.9279 44 1 8.5007 -3.4287 2.5643 45 1 12.1509 -5.0200 5.9938 46 1 7.5725 -6.4580 4.6049 47 1 6.7810 -4.9980 5.3390 48 1 4.8870 -5.3953 3.2772 49 1 5.2917 -3.7227 3.7435 50 1 1.6581 -2.1325 -0.0097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053404864.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:06 Heat of formation + Delta-G solvation = -10.636650 kcal Electronic energy + Delta-G solvation = -30492.739351 eV Core-core repulsion = 26486.168720 eV Total energy + Delta-G solvation = -4006.570630 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.99282 -40.85523 -39.84647 -38.03847 -35.79818 -34.71224 -34.44795 -34.37282 -31.89343 -29.95851 -29.30397 -28.11245 -27.56132 -27.38003 -26.99030 -24.55426 -23.41911 -22.10206 -21.62590 -20.82768 -19.94893 -19.62400 -18.36341 -17.92761 -17.38167 -17.20842 -16.92962 -16.69013 -16.24568 -16.02946 -15.56061 -15.47737 -15.31123 -15.08585 -14.99214 -14.90912 -14.48772 -14.25898 -14.00632 -13.92142 -13.82848 -13.50480 -13.35794 -13.21136 -13.19250 -12.90952 -12.73778 -12.55221 -12.40456 -12.34955 -12.19928 -11.90039 -11.85412 -11.84929 -11.45368 -11.30407 -11.08761 -10.87538 -10.74171 -9.61449 -9.50810 -9.41726 -9.24307 -8.69595 -5.51854 0.41045 0.48496 1.37117 1.48228 1.58239 1.66701 1.84705 2.51952 2.52687 2.80052 2.85211 3.14606 3.34316 3.56312 3.63791 3.77952 3.85628 3.94184 3.99087 4.10831 4.23338 4.23675 4.31440 4.36420 4.42518 4.45479 4.45903 4.52366 4.54046 4.57535 4.58613 4.64453 4.68449 4.70060 4.79116 4.80447 4.84920 4.88294 4.94175 4.99560 5.06387 5.08362 5.26919 5.30556 5.36213 5.61787 5.65276 5.73185 5.88397 6.15013 6.23097 6.34421 6.63727 7.11466 7.26188 8.18588 8.85671 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018360 B = 0.002498 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.658053 B =11205.669675 C =11648.892852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.094 4.094 3 C -0.135 4.135 4 C -0.096 4.096 5 C -0.113 4.113 6 C -0.133 4.133 7 C -0.070 4.070 8 C -0.093 4.093 9 C 0.516 3.484 10 O -0.576 6.576 11 N -0.614 5.614 12 C 0.076 3.924 13 C 0.034 3.966 14 O -0.364 6.364 15 C 0.089 3.911 16 C 0.104 3.896 17 N -0.652 5.652 18 C -0.291 4.291 19 H 0.047 0.953 20 C -0.084 4.084 21 N -0.968 5.968 22 Si 1.108 2.892 23 H -0.301 1.301 24 H -0.256 1.256 25 H -0.272 1.272 26 C 0.103 3.897 27 C 0.110 3.890 28 C -0.126 4.126 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.135 0.865 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.136 0.864 39 H 0.100 0.900 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.045 0.955 43 H 0.050 0.950 44 H 0.041 0.959 45 H 0.245 0.755 46 H 0.060 0.940 47 H 0.078 0.922 48 H 0.097 0.903 49 H 0.090 0.910 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.739 8.245 -21.988 34.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.094 4.094 3 C -0.153 4.153 4 C -0.096 4.096 5 C -0.169 4.169 6 C -0.151 4.151 7 C -0.070 4.070 8 C -0.132 4.132 9 C 0.306 3.694 10 O -0.455 6.455 11 N -0.348 5.348 12 C -0.046 4.046 13 C -0.042 4.042 14 O -0.282 6.282 15 C 0.047 3.953 16 C -0.022 4.022 17 N -0.380 5.380 18 C -0.418 4.418 19 H 0.065 0.935 20 C -0.276 4.276 21 N -0.614 5.614 22 Si 0.934 3.066 23 H -0.229 1.229 24 H -0.181 1.181 25 H -0.198 1.198 26 C -0.022 4.022 27 C -0.014 4.014 28 C -0.144 4.144 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.153 0.847 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.137 0.863 37 H 0.143 0.857 38 H 0.154 0.846 39 H 0.118 0.882 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.078 0.922 47 H 0.095 0.905 48 H 0.115 0.885 49 H 0.108 0.892 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -24.891 7.233 -20.336 32.945 hybrid contribution 1.414 1.773 -0.637 2.356 sum -23.477 9.006 -20.973 32.743 Atomic orbital electron populations 1.20812 0.89509 1.03281 1.03162 1.20215 0.97418 0.92971 0.98784 1.21155 0.93560 0.98338 1.02220 1.20181 0.94427 0.95921 0.99065 1.20812 0.99701 0.93354 1.03075 1.21048 0.99855 0.92185 1.01983 1.19466 0.93951 0.94082 0.99544 1.20773 1.03679 0.96247 0.92536 1.21159 0.76584 0.79255 0.92389 1.90720 1.52477 1.54321 1.47974 1.48309 1.56342 1.22991 1.07168 1.22701 0.94315 0.96867 0.90673 1.23308 0.96023 1.00482 0.84407 1.87945 1.84029 1.41696 1.14576 1.22519 0.92186 0.91569 0.89027 1.22979 0.92304 0.94175 0.92733 1.45882 1.04549 1.32980 1.54580 1.19953 0.83954 1.18468 1.19433 0.93536 1.27145 1.02645 1.02242 0.95518 1.71031 1.04292 1.43467 1.42573 0.83282 0.73233 0.74523 0.75604 1.22904 1.18053 1.19833 1.22882 0.87277 0.97734 0.94275 1.21857 0.93319 1.01360 0.84854 1.21068 0.93437 0.98367 1.01522 0.89866 0.91272 0.90970 0.84745 0.89912 0.90782 0.91918 0.86254 0.85686 0.84574 0.88176 0.84843 0.84789 0.93626 0.93269 0.94054 0.94584 0.92236 0.90454 0.88513 0.89208 0.85126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.01 71.24 0.71 -0.64 16 2 C -0.09 -1.69 5.88 -19.87 -0.12 -1.81 16 3 C -0.13 -2.47 9.36 22.27 0.21 -2.27 16 4 C -0.10 -1.89 5.88 -19.86 -0.12 -2.01 16 5 C -0.11 -1.69 10.01 71.23 0.71 -0.97 16 6 C -0.13 -2.80 9.36 22.27 0.21 -2.59 16 7 C -0.07 -1.38 4.37 -19.87 -0.09 -1.47 16 8 C -0.09 -1.37 4.20 29.10 0.12 -1.24 16 9 C 0.52 12.09 7.71 87.66 0.68 12.77 16 10 O -0.58 -19.13 15.53 -3.03 -0.05 -19.18 16 11 N -0.61 -13.39 3.03 -818.07 -2.48 -15.87 16 12 C 0.08 1.07 6.50 86.33 0.56 1.63 16 13 C 0.03 0.72 6.90 72.06 0.50 1.22 16 14 O -0.36 -12.10 10.53 -148.98 -1.57 -13.66 16 15 C 0.09 3.08 1.27 -11.02 -0.01 3.07 16 16 C 0.10 4.33 7.91 83.31 0.66 4.99 16 17 N -0.65 -33.55 3.70 -739.91 -2.74 -36.29 16 18 C -0.29 -17.88 11.08 84.03 0.93 -16.95 16 19 H 0.05 3.09 8.05 -2.91 -0.02 3.07 16 20 C -0.08 -5.25 5.50 84.86 0.47 -4.78 16 21 N -0.97 -64.67 13.70 21.65 0.30 -64.38 16 22 Si 1.11 55.19 25.15 68.60 1.72 56.91 16 23 H -0.30 -15.20 7.11 99.48 0.71 -14.49 16 24 H -0.26 -11.29 6.18 99.48 0.61 -10.68 16 25 H -0.27 -12.60 6.53 99.48 0.65 -11.95 16 26 C 0.10 4.34 5.10 83.22 0.42 4.77 16 27 C 0.11 3.02 5.83 86.13 0.50 3.53 16 28 C -0.13 -2.38 9.36 22.27 0.21 -2.17 16 29 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 31 H 0.07 0.77 8.09 -2.38 -0.02 0.75 16 32 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 33 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 0.96 8.09 -2.39 -0.02 0.94 16 35 H 0.06 0.98 8.08 -2.39 -0.02 0.96 16 36 H 0.12 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.13 1.28 7.63 -2.38 -0.02 1.26 16 38 H 0.14 1.07 7.93 -2.39 -0.02 1.05 16 39 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.13 0.81 6.03 -2.39 -0.01 0.79 16 41 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.05 1.05 7.30 -2.39 -0.02 1.04 16 43 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 44 H 0.04 1.72 7.36 -2.38 -0.02 1.70 16 45 H 0.25 16.45 8.73 -92.71 -0.81 15.64 16 46 H 0.06 2.58 4.69 -2.39 -0.01 2.57 16 47 H 0.08 3.02 7.62 -2.39 -0.02 3.00 16 48 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 49 H 0.09 2.77 6.89 -2.39 -0.02 2.76 16 50 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -85.43 395.09 2.49 -82.94 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.74 Total: 14.47 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 6.56 Total: -4.93 kcal Atomic # 7 Polarization: -111.62 SS G_CDS: -4.92 Total: -116.54 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -1.62 Total: -32.85 kcal Atomic # 14 Polarization: 55.19 SS G_CDS: 1.72 Total: 56.91 kcal Total: -85.43 2.49 -82.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053404864.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.305 kcal (2) G-P(sol) polarization free energy of solvation -85.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds