Wall clock time and date at job start Wed Apr 1 2020 02:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38248 * 120.00250 * 2 1 4 4 C 1.38215 * 120.00152 * 180.02562 * 3 2 1 5 5 C 1.38263 * 119.99940 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99750 * 179.97438 * 5 4 3 7 7 C 1.38203 * 119.99888 * 359.97438 * 5 4 3 8 8 C 1.50698 * 119.99938 * 179.97438 * 7 5 4 9 9 C 1.50693 * 109.47501 * 85.00059 * 8 7 5 10 10 O 1.21286 * 119.99751 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00439 * 179.97438 * 9 8 7 12 12 C 1.47225 * 121.11740 * 0.02924 * 11 9 8 13 13 C 1.53229 * 108.75936 * 127.78341 * 12 11 9 14 14 O 1.43097 * 109.34148 * 54.13033 * 13 12 11 15 15 C 1.42497 * 113.96945 * 300.03252 * 14 13 12 16 16 C 1.53438 * 113.81154 * 189.53827 * 15 14 13 17 17 N 1.47673 * 85.98140 * 91.23992 * 16 15 14 18 18 C 1.36938 * 134.45877 * 204.28994 * 17 16 15 19 19 H 1.08001 * 119.99675 * 179.97438 * 18 17 16 20 20 C 1.38809 * 120.00234 * 359.97438 * 18 17 16 21 21 N 1.31629 * 119.99457 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00341 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46694 * 60.00050 * 22 20 18 24 24 H 1.48496 * 109.46870 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.46888 * 300.00126 * 22 20 18 26 26 C 1.47671 * 91.08729 * 24.29207 * 17 16 15 27 27 C 1.47343 * 121.05560 * 179.97438 * 11 9 8 28 28 C 1.38219 * 119.99703 * 180.26956 * 2 1 3 29 29 H 1.09007 * 109.46896 * 90.00466 * 1 2 3 30 30 H 1.09005 * 109.47520 * 210.00037 * 1 2 3 31 31 H 1.09002 * 109.47386 * 330.00776 * 1 2 3 32 32 H 1.07996 * 119.99966 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.00041 * 179.97438 * 4 3 2 34 34 H 1.08996 * 109.46826 * 270.01717 * 6 5 4 35 35 H 1.08996 * 109.47460 * 30.01359 * 6 5 4 36 36 H 1.08998 * 109.46862 * 150.02141 * 6 5 4 37 37 H 1.09004 * 109.47043 * 324.99957 * 8 7 5 38 38 H 1.09004 * 109.47165 * 205.00253 * 8 7 5 39 39 H 1.08998 * 109.57421 * 7.99800 * 12 11 9 40 40 H 1.09001 * 109.58108 * 247.57047 * 12 11 9 41 41 H 1.08997 * 109.49177 * 294.16493 * 13 12 11 42 42 H 1.08997 * 109.48805 * 174.09201 * 13 12 11 43 43 H 1.08998 * 113.79082 * 205.50439 * 16 15 14 44 44 H 1.09001 * 113.79718 * 336.97760 * 16 15 14 45 45 H 0.96998 * 119.99175 * 180.02562 * 21 20 18 46 46 H 1.08995 * 113.79550 * 221.45150 * 26 17 16 47 47 H 1.09002 * 113.90087 * 89.98566 * 26 17 16 48 48 H 1.09002 * 109.74627 * 108.73208 * 27 11 9 49 49 H 1.09000 * 109.74658 * 348.05901 * 27 11 9 50 50 H 1.08001 * 120.00140 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5804 1.1972 -0.0005 5 6 4.2717 -0.0002 -0.0005 6 6 5.7787 -0.0002 -0.0017 7 6 3.5806 -1.1970 0.0005 8 6 4.3340 -2.5022 0.0000 9 6 4.6941 -2.8750 1.4149 10 8 4.3703 -2.1523 2.3336 11 7 5.3750 -4.0121 1.6598 12 6 5.7799 -4.9075 0.5635 13 6 7.2818 -5.1860 0.6840 14 8 7.5683 -5.6812 1.9957 15 6 7.2196 -4.7805 3.0434 16 6 7.7341 -5.2077 4.4244 17 7 8.9314 -4.4014 4.1127 18 6 10.2336 -4.4149 4.5360 19 1 10.9369 -3.6959 4.1422 20 6 10.6498 -5.3524 5.4712 21 7 9.7928 -6.2289 5.9506 22 14 12.4264 -5.3712 6.0482 23 1 12.7565 -4.0668 6.6765 24 1 12.6131 -6.4604 7.0400 25 1 13.3218 -5.6017 4.8861 26 6 8.1617 -3.5748 3.1614 27 6 5.7395 -4.3988 3.0340 28 6 2.1980 -1.1970 -0.0056 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8901 0.5137 32 1 1.6583 2.1325 -0.0004 33 1 4.1204 2.1325 -0.0010 34 1 6.1412 -0.0003 -1.0296 35 1 6.1425 0.8899 0.5116 36 1 6.1424 -0.8901 0.5119 37 1 5.2441 -2.3961 -0.5906 38 1 3.7086 -3.2826 -0.4335 39 1 5.5723 -4.4297 -0.3939 40 1 5.2275 -5.8445 0.6343 41 1 7.8375 -4.2639 0.5139 42 1 7.5744 -5.9295 -0.0574 43 1 7.1445 -4.8167 5.2536 44 1 7.9332 -6.2761 4.5084 45 1 10.0836 -6.8838 6.6044 46 1 8.7002 -3.3459 2.2419 47 1 7.6985 -2.6975 3.6131 48 1 5.1375 -5.2513 3.3487 49 1 5.5714 -3.5600 3.7095 50 1 1.6580 -2.1323 -0.0096 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053405353.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:10 Heat of formation + Delta-G solvation = 8.160996 kcal Electronic energy + Delta-G solvation = -30797.469357 eV Core-core repulsion = 26791.713854 eV Total energy + Delta-G solvation = -4005.755503 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.66328 -39.74607 -38.48954 -36.23426 -34.46222 -34.36688 -32.60406 -32.16464 -30.12108 -29.44149 -28.68928 -27.45934 -25.73934 -25.08809 -24.88445 -23.31800 -22.49520 -21.79590 -20.51911 -19.12046 -18.74607 -17.24769 -16.82436 -16.36009 -16.24232 -15.89602 -15.52789 -15.20094 -14.91546 -14.70972 -14.41333 -14.31614 -14.05241 -13.72150 -13.54332 -13.37425 -13.31809 -13.20708 -12.91719 -12.85816 -12.59655 -12.32674 -12.11065 -12.04922 -11.95646 -11.63227 -11.36060 -11.14964 -11.09286 -11.03927 -10.83864 -10.80035 -10.75694 -10.18131 -10.04418 -9.65197 -9.62216 -9.27845 -8.87114 -8.80347 -8.48667 -8.28949 -6.86305 -5.73487 -3.05396 1.20289 1.28401 2.65082 2.93200 3.42528 3.45964 3.47567 3.60596 4.04998 4.43017 4.46306 4.55525 4.62231 4.72949 4.84401 4.85866 4.94961 5.02198 5.03371 5.08700 5.17508 5.20796 5.25762 5.30445 5.36868 5.40165 5.41606 5.50410 5.57265 5.59465 5.61075 5.71394 5.76314 5.80303 5.85242 5.97809 6.06733 6.10291 6.30797 6.31514 6.37044 6.45375 6.50347 6.53564 6.60478 6.91005 6.97150 7.19960 7.40670 7.52007 7.82308 8.00796 8.20327 9.06713 9.73296 10.59717 11.43986 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020239 B = 0.002466 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.144186 B =11349.962558 C =11779.517049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.118 4.118 4 C -0.117 4.117 5 C -0.071 4.071 6 C -0.117 4.117 7 C -0.061 4.061 8 C -0.103 4.103 9 C 0.517 3.483 10 O -0.528 6.528 11 N -0.613 5.613 12 C 0.072 3.928 13 C 0.044 3.956 14 O -0.335 6.335 15 C 0.053 3.947 16 C 0.182 3.818 17 N -0.602 5.602 18 C -0.221 4.221 19 H 0.079 0.921 20 C -0.007 4.007 21 N -0.921 5.921 22 Si 0.913 3.087 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.285 1.285 26 C 0.102 3.898 27 C 0.099 3.901 28 C -0.104 4.104 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.053 0.947 42 H 0.101 0.899 43 H 0.044 0.956 44 H 0.085 0.915 45 H 0.255 0.745 46 H 0.043 0.957 47 H 0.041 0.959 48 H 0.072 0.928 49 H 0.101 0.899 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.830 8.727 -17.701 25.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.136 4.136 4 C -0.135 4.135 5 C -0.071 4.071 6 C -0.174 4.174 7 C -0.061 4.061 8 C -0.142 4.142 9 C 0.304 3.696 10 O -0.404 6.404 11 N -0.348 5.348 12 C -0.051 4.051 13 C -0.034 4.034 14 O -0.252 6.252 15 C 0.011 3.989 16 C 0.056 3.944 17 N -0.328 5.328 18 C -0.348 4.348 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.568 5.568 22 Si 0.743 3.257 23 H -0.212 1.212 24 H -0.215 1.215 25 H -0.211 1.211 26 C -0.024 4.024 27 C -0.024 4.024 28 C -0.122 4.122 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.120 0.880 43 H 0.061 0.939 44 H 0.104 0.896 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.058 0.942 48 H 0.091 0.909 49 H 0.119 0.881 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.631 8.807 -16.964 25.336 hybrid contribution 0.864 0.208 0.299 0.938 sum -15.767 9.015 -16.665 24.649 Atomic orbital electron populations 1.20761 0.91335 1.02739 1.02026 1.19811 0.95914 0.93096 1.00629 1.20966 0.94146 0.97365 1.01136 1.20963 0.94141 0.97348 1.00998 1.19692 0.95948 0.92547 0.98953 1.20829 0.91294 1.03358 1.01916 1.19106 0.93293 0.93126 1.00624 1.20718 1.01850 0.96315 0.95354 1.20423 0.77794 0.80323 0.91020 1.90733 1.53226 1.50291 1.46177 1.48276 1.55968 1.22298 1.08249 1.22481 0.97507 0.94845 0.90280 1.22877 0.92969 1.00475 0.87065 1.88058 1.83639 1.40952 1.12580 1.23759 0.90170 0.92782 0.92161 1.22204 0.85290 0.99469 0.87391 1.45747 1.04640 1.34342 1.48055 1.18918 0.83238 1.13377 1.19269 0.90354 1.24767 0.98050 0.98222 0.99305 1.69791 1.33284 1.20507 1.33249 0.86184 0.84169 0.77090 0.78212 1.21226 1.21525 1.21110 1.23031 0.91949 0.93461 0.93966 1.22282 0.95928 1.01443 0.82763 1.20813 0.93187 0.97568 1.00605 0.91399 0.91636 0.91666 0.86312 0.86129 0.91175 0.91327 0.91531 0.87927 0.88194 0.89301 0.90383 0.92847 0.88049 0.93862 0.89648 0.93545 0.93888 0.94171 0.90930 0.88072 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 36.00 0.36 -0.47 16 2 C -0.09 -0.96 5.88 -104.63 -0.62 -1.58 16 3 C -0.12 -1.19 9.70 -39.59 -0.38 -1.57 16 4 C -0.12 -1.24 9.70 -39.58 -0.38 -1.63 16 5 C -0.07 -0.83 5.88 -104.62 -0.62 -1.44 16 6 C -0.12 -1.22 9.22 36.01 0.33 -0.89 16 7 C -0.06 -0.70 4.37 -104.63 -0.46 -1.16 16 8 C -0.10 -1.03 3.52 -29.04 -0.10 -1.13 16 9 C 0.52 7.20 6.93 -10.99 -0.08 7.12 16 10 O -0.53 -9.51 15.53 5.55 0.09 -9.42 16 11 N -0.61 -8.37 3.03 -172.37 -0.52 -8.90 16 12 C 0.07 0.76 6.51 -3.53 -0.02 0.73 16 13 C 0.04 0.58 6.88 37.28 0.26 0.83 16 14 O -0.33 -6.34 10.52 -35.23 -0.37 -6.71 16 15 C 0.05 1.03 1.21 -90.32 -0.11 0.92 16 16 C 0.18 4.38 6.90 -3.18 -0.02 4.36 16 17 N -0.60 -15.93 3.70 -180.30 -0.67 -16.59 16 18 C -0.22 -6.35 10.70 -15.06 -0.16 -6.51 16 19 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 20 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 21 N -0.92 -27.68 11.39 55.49 0.63 -27.05 16 22 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 C 0.10 2.20 8.08 -3.17 -0.03 2.18 16 27 C 0.10 1.62 5.77 -3.66 -0.02 1.60 16 28 C -0.10 -1.13 9.34 -39.58 -0.37 -1.50 16 29 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 31 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 32 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 36 H 0.07 0.78 6.16 -51.93 -0.32 0.46 16 37 H 0.10 0.85 6.54 -51.93 -0.34 0.51 16 38 H 0.10 0.76 7.90 -51.93 -0.41 0.35 16 39 H 0.09 0.63 6.04 -51.93 -0.31 0.32 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.72 7.19 -51.93 -0.37 0.34 16 42 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.04 1.03 8.09 -51.93 -0.42 0.61 16 44 H 0.09 2.29 7.17 -51.93 -0.37 1.91 16 45 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.04 0.90 7.27 -51.93 -0.38 0.52 16 47 H 0.04 0.87 7.94 -51.93 -0.41 0.46 16 48 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 49 H 0.10 1.80 6.91 -51.93 -0.36 1.45 16 50 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 397.65 15.07 5.99 5.99 Total: -1.00 -35.38 397.65 -10.27 -45.65 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -7.89 Total: -0.05 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -2.51 Total: -0.43 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.56 Total: -52.54 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.28 Total: -16.13 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.38 -10.27 -45.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053405353.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.815 kcal (2) G-P(sol) polarization free energy of solvation -35.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds