Wall clock time and date at job start Wed Apr 1 2020 04:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38261 * 119.99612 * 2 1 4 4 C 1.38220 * 119.99919 * 179.97438 * 3 2 1 5 5 C 1.38251 * 119.99950 * 359.75083 * 4 3 2 6 6 C 1.38218 * 119.99683 * 0.50576 * 5 4 3 7 7 C 1.50703 * 119.99824 * 179.76275 * 6 5 4 8 8 H 1.09003 * 109.47242 * 179.72287 * 7 6 5 9 9 C 1.53003 * 109.46739 * 59.72771 * 7 6 5 10 10 C 1.50694 * 109.47644 * 299.73288 * 7 6 5 11 11 O 1.21278 * 119.99762 * 20.01537 * 10 7 6 12 12 N 1.34781 * 120.00387 * 200.02648 * 10 7 6 13 13 C 1.47126 * 121.05150 * 4.71952 * 12 10 7 14 14 C 1.53228 * 108.72697 * 127.77506 * 13 12 10 15 15 O 1.43108 * 109.34229 * 54.12583 * 14 13 12 16 16 C 1.42484 * 113.98024 * 300.04592 * 15 14 13 17 17 C 1.53467 * 113.76607 * 286.79214 * 16 15 14 18 18 N 1.47661 * 85.97235 * 268.71700 * 17 16 15 19 19 C 1.36939 * 134.45746 * 155.74745 * 18 17 16 20 20 H 1.08000 * 120.00035 * 179.97438 * 19 18 17 21 21 C 1.38817 * 119.99658 * 359.94905 * 19 18 17 22 22 N 1.31617 * 119.99959 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 119.99576 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47624 * 59.99921 * 23 21 19 25 25 H 1.48506 * 109.47066 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47540 * 299.99600 * 23 21 19 27 27 C 1.47673 * 91.08833 * 335.71099 * 18 17 16 28 28 C 1.47337 * 121.05764 * 184.43951 * 12 10 7 29 29 C 1.38213 * 120.00484 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.46951 * 270.01664 * 1 2 3 31 31 H 1.08999 * 109.47424 * 30.02324 * 1 2 3 32 32 H 1.09005 * 109.46720 * 150.02309 * 1 2 3 33 33 H 1.07995 * 120.00423 * 0.02562 * 3 2 1 34 34 H 1.08002 * 119.99457 * 180.02562 * 4 3 2 35 35 H 1.07999 * 120.00258 * 180.27073 * 5 4 3 36 36 H 1.09001 * 109.46834 * 173.85953 * 9 7 6 37 37 H 1.08997 * 109.47553 * 293.86014 * 9 7 6 38 38 H 1.09002 * 109.47369 * 53.86462 * 9 7 6 39 39 H 1.08997 * 109.59481 * 247.55099 * 13 12 10 40 40 H 1.09000 * 109.59633 * 8.00577 * 13 12 10 41 41 H 1.08991 * 109.49219 * 174.08759 * 14 13 12 42 42 H 1.09004 * 109.49324 * 294.14326 * 14 13 12 43 43 H 1.08993 * 113.79138 * 22.98692 * 17 16 15 44 44 H 1.09003 * 113.79069 * 154.45185 * 17 16 15 45 45 H 0.96997 * 119.99883 * 180.02562 * 22 21 19 46 46 H 1.09002 * 113.79214 * 270.02862 * 27 18 17 47 47 H 1.09003 * 113.89746 * 138.57465 * 27 18 17 48 48 H 1.09000 * 109.74303 * 348.03828 * 28 12 10 49 49 H 1.09002 * 109.74065 * 108.74863 * 28 12 10 50 50 H 1.07996 * 119.99693 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0002 0.0063 6 6 3.5807 -1.1968 0.0009 7 6 4.3343 -2.5019 0.0018 8 1 3.6260 -3.3304 0.0020 9 6 5.2134 -2.5822 1.2514 10 6 5.2012 -2.5823 -1.2282 11 8 5.4969 -1.5710 -1.8288 12 7 5.6477 -3.7780 -1.6610 13 6 5.2204 -5.0277 -1.0127 14 6 4.6881 -5.9821 -2.0868 15 8 5.6779 -6.1468 -3.1071 16 6 6.0427 -4.9347 -3.7612 17 6 4.9697 -4.4025 -4.7206 18 7 5.6612 -5.1868 -5.7632 19 6 5.2830 -5.7363 -6.9591 20 1 6.0011 -6.2804 -7.5546 21 6 3.9763 -5.5945 -7.4057 22 7 3.1011 -4.9314 -6.6799 23 14 3.4601 -6.3446 -9.0366 24 1 3.6667 -7.8145 -8.9930 25 1 2.0251 -6.0531 -9.2835 26 1 4.2783 -5.7621 -10.1305 27 6 6.9245 -5.1404 -4.9999 28 6 6.5745 -3.8756 -2.8022 29 6 2.1982 -1.1969 0.0005 30 1 -0.3633 0.0003 1.0277 31 1 -0.3634 0.8897 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6583 2.1327 0.0004 34 1 4.1203 2.1329 0.0010 35 1 5.3517 0.0003 0.0111 36 1 5.6741 -3.5684 1.3087 37 1 5.9912 -1.8204 1.1981 38 1 4.6014 -2.4151 2.1377 39 1 6.0696 -5.4853 -0.5054 40 1 4.4323 -4.8140 -0.2907 41 1 4.4659 -6.9493 -1.6361 42 1 3.7799 -5.5673 -2.5242 43 1 3.9641 -4.7586 -4.4969 44 1 5.0158 -3.3249 -4.8779 45 1 2.1880 -4.8326 -6.9918 46 1 7.5522 -4.2823 -5.2402 47 1 7.4737 -6.0819 -4.9973 48 1 6.6329 -2.9142 -3.3124 49 1 7.5639 -4.1664 -2.4492 50 1 1.6582 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053450957.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:25 Heat of formation + Delta-G solvation = 12.349939 kcal Electronic energy + Delta-G solvation = -31168.472085 eV Core-core repulsion = 27162.898228 eV Total energy + Delta-G solvation = -4005.573857 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.70876 -39.59167 -38.43732 -36.20715 -34.60370 -34.36575 -32.36355 -32.17702 -30.14558 -29.71246 -27.87227 -26.88376 -26.24767 -25.06108 -24.50311 -23.29540 -22.31979 -21.87018 -20.77681 -18.93488 -18.65467 -17.30829 -16.83474 -16.55139 -16.14547 -15.75340 -15.34477 -15.09722 -14.89239 -14.73260 -14.36137 -14.14607 -13.94393 -13.71124 -13.64972 -13.49970 -13.27173 -13.05735 -12.82077 -12.47763 -12.42904 -12.32442 -12.20648 -12.05854 -11.82800 -11.59237 -11.31165 -11.12006 -11.01228 -10.89498 -10.84451 -10.79179 -10.62906 -10.22687 -9.94989 -9.58323 -9.48966 -9.21496 -8.79736 -8.78120 -8.55874 -8.21647 -6.85077 -5.71997 -3.04413 1.32062 1.42159 2.72123 2.98483 3.42899 3.46295 3.47832 3.76503 4.05401 4.41539 4.45200 4.48492 4.76739 4.83028 4.90778 4.93198 4.99408 5.09769 5.14006 5.16002 5.26576 5.28297 5.31619 5.39693 5.40692 5.45814 5.49700 5.56803 5.61842 5.66251 5.73395 5.74557 5.84122 5.88475 5.98366 6.02217 6.09659 6.12775 6.31218 6.46007 6.49581 6.51068 6.55359 6.59510 6.63013 7.01188 7.04115 7.22190 7.47160 7.52851 7.83232 8.01032 8.26730 9.07587 9.74454 10.61100 11.45010 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011753 B = 0.003186 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.774790 B = 8786.125067 C =10088.108249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.120 4.120 4 C -0.122 4.122 5 C -0.083 4.083 6 C -0.069 4.069 7 C -0.071 4.071 8 H 0.100 0.900 9 C -0.136 4.136 10 C 0.523 3.477 11 O -0.529 6.529 12 N -0.608 5.608 13 C 0.072 3.928 14 C 0.046 3.954 15 O -0.341 6.341 16 C 0.049 3.951 17 C 0.152 3.848 18 N -0.603 5.603 19 C -0.220 4.220 20 H 0.080 0.920 21 C -0.007 4.007 22 N -0.922 5.922 23 Si 0.913 3.087 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.136 3.864 28 C 0.100 3.900 29 C -0.111 4.111 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.033 0.967 45 H 0.253 0.747 46 H 0.049 0.951 47 H 0.056 0.944 48 H 0.101 0.899 49 H 0.068 0.932 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.335 6.311 21.158 22.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.138 4.138 4 C -0.140 4.140 5 C -0.101 4.101 6 C -0.069 4.069 7 C -0.093 4.093 8 H 0.118 0.882 9 C -0.194 4.194 10 C 0.310 3.690 11 O -0.405 6.405 12 N -0.342 5.342 13 C -0.051 4.051 14 C -0.032 4.032 15 O -0.259 6.259 16 C 0.008 3.992 17 C 0.027 3.973 18 N -0.329 5.329 19 C -0.347 4.347 20 H 0.098 0.902 21 C -0.204 4.204 22 N -0.570 5.570 23 Si 0.743 3.257 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.010 3.990 28 C -0.023 4.023 29 C -0.129 4.129 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.119 0.881 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.051 0.949 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.074 0.926 48 H 0.120 0.880 49 H 0.086 0.914 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.340 6.595 20.506 21.543 hybrid contribution -0.489 -0.161 -0.957 1.087 sum -0.149 6.434 19.548 20.581 Atomic orbital electron populations 1.20771 0.91282 1.02893 1.02007 1.19824 0.95956 0.93071 1.00430 1.21006 0.94303 0.97339 1.01189 1.21101 0.94220 0.97982 1.00686 1.20949 1.00044 0.91569 0.97542 1.19307 0.93149 0.93627 1.00856 1.20283 0.97461 0.97086 0.94435 0.88197 1.21738 0.99437 1.02723 0.95480 1.20362 0.80269 0.82903 0.85455 1.90705 1.58065 1.34378 1.57333 1.48119 1.47291 1.05679 1.33146 1.22511 1.00729 0.85527 0.96371 1.22875 0.92453 0.99389 0.88482 1.87928 1.58084 1.29316 1.50580 1.23586 0.99841 0.84968 0.90839 1.22672 0.96488 0.94031 0.84157 1.45775 1.04958 1.60907 1.21265 1.18956 0.94587 1.26876 0.94326 0.90184 1.24764 0.96025 1.00661 0.98914 1.69809 1.03620 1.45410 1.38124 0.86192 0.77432 0.78835 0.83255 1.21071 1.21599 1.21191 1.22480 0.90895 0.99268 0.86376 1.22155 0.91797 1.01468 0.86902 1.20887 0.93191 0.97731 1.01063 0.91420 0.91649 0.91475 0.86405 0.86229 0.85978 0.91641 0.91794 0.91164 0.90588 0.89138 0.88134 0.92123 0.90680 0.94911 0.93676 0.93315 0.92629 0.88046 0.91397 0.86184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.01 36.01 0.36 -0.63 16 2 C -0.09 -1.06 5.88 -104.62 -0.62 -1.67 16 3 C -0.12 -1.35 9.70 -39.58 -0.38 -1.73 16 4 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 5 C -0.08 -1.08 7.92 -39.58 -0.31 -1.39 16 6 C -0.07 -0.87 4.59 -104.62 -0.48 -1.36 16 7 C -0.07 -0.81 2.07 -92.92 -0.19 -1.00 16 8 H 0.10 0.97 6.07 -51.93 -0.32 0.65 16 9 C -0.14 -1.17 8.82 37.16 0.33 -0.84 16 10 C 0.52 7.89 6.83 -10.99 -0.08 7.81 16 11 O -0.53 -9.90 14.11 5.56 0.08 -9.82 16 12 N -0.61 -8.87 3.03 -172.70 -0.52 -9.40 16 13 C 0.07 0.82 5.95 -3.58 -0.02 0.80 16 14 C 0.05 0.67 6.88 37.28 0.26 0.93 16 15 O -0.34 -6.55 10.52 -35.23 -0.37 -6.92 16 16 C 0.05 0.97 1.21 -90.53 -0.11 0.86 16 17 C 0.15 3.77 6.64 -3.17 -0.02 3.75 16 18 N -0.60 -16.10 3.70 -180.34 -0.67 -16.76 16 19 C -0.22 -6.38 10.70 -15.06 -0.16 -6.54 16 20 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 21 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 22 N -0.92 -28.19 11.39 55.49 0.63 -27.55 16 23 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 C 0.14 2.89 8.33 -3.18 -0.03 2.86 16 28 C 0.10 1.65 5.76 -3.87 -0.02 1.63 16 29 C -0.11 -1.33 9.33 -39.59 -0.37 -1.70 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 32 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.12 1.59 7.10 -52.49 -0.37 1.22 16 36 H 0.06 0.48 7.58 -51.93 -0.39 0.08 16 37 H 0.06 0.59 7.60 -51.93 -0.39 0.20 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.09 0.78 5.45 -51.93 -0.28 0.49 16 41 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.06 1.01 7.20 -51.93 -0.37 0.64 16 43 H 0.08 2.06 6.31 -51.93 -0.33 1.74 16 44 H 0.03 0.87 7.92 -51.93 -0.41 0.45 16 45 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.05 0.96 8.09 -51.93 -0.42 0.54 16 47 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.10 1.84 6.86 -51.93 -0.36 1.49 16 49 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 50 H 0.12 1.23 7.95 -52.49 -0.42 0.82 16 LS Contribution 395.20 15.07 5.96 5.96 Total: -1.00 -35.58 395.20 -10.09 -45.68 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -7.83 Total: 1.50 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -2.34 Total: -0.36 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -0.56 Total: -53.71 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.29 Total: -16.74 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.58 -10.09 -45.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053450957.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.027 kcal (2) G-P(sol) polarization free energy of solvation -35.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds