Wall clock time and date at job start Wed Apr 1 2020 04:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38261 * 119.99612 * 2 1 4 4 C 1.38220 * 119.99919 * 179.97438 * 3 2 1 5 5 C 1.38251 * 119.99950 * 359.75083 * 4 3 2 6 6 C 1.38218 * 119.99683 * 0.50576 * 5 4 3 7 7 C 1.50703 * 119.99824 * 179.76275 * 6 5 4 8 8 H 1.09003 * 109.47242 * 179.72287 * 7 6 5 9 9 C 1.53003 * 109.46739 * 59.72771 * 7 6 5 10 10 C 1.50694 * 109.47644 * 299.73288 * 7 6 5 11 11 O 1.21278 * 119.99762 * 20.01537 * 10 7 6 12 12 N 1.34781 * 120.00387 * 200.02648 * 10 7 6 13 13 C 1.47126 * 121.05150 * 4.71952 * 12 10 7 14 14 C 1.53228 * 108.72697 * 127.77506 * 13 12 10 15 15 O 1.43108 * 109.34229 * 54.12583 * 14 13 12 16 16 C 1.42484 * 113.98024 * 300.04592 * 15 14 13 17 17 C 1.53467 * 113.76607 * 286.79214 * 16 15 14 18 18 N 1.47661 * 85.97235 * 268.71700 * 17 16 15 19 19 C 1.36939 * 134.45746 * 155.74745 * 18 17 16 20 20 H 1.08000 * 120.00035 * 179.97438 * 19 18 17 21 21 C 1.38817 * 119.99658 * 359.94905 * 19 18 17 22 22 N 1.31617 * 119.99959 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 119.99576 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47624 * 59.99921 * 23 21 19 25 25 H 1.48506 * 109.47066 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47540 * 299.99600 * 23 21 19 27 27 C 1.47673 * 91.08833 * 335.71099 * 18 17 16 28 28 C 1.47337 * 121.05764 * 184.43951 * 12 10 7 29 29 C 1.38213 * 120.00484 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.46951 * 270.01664 * 1 2 3 31 31 H 1.08999 * 109.47424 * 30.02324 * 1 2 3 32 32 H 1.09005 * 109.46720 * 150.02309 * 1 2 3 33 33 H 1.07995 * 120.00423 * 0.02562 * 3 2 1 34 34 H 1.08002 * 119.99457 * 180.02562 * 4 3 2 35 35 H 1.07999 * 120.00258 * 180.27073 * 5 4 3 36 36 H 1.09001 * 109.46834 * 173.85953 * 9 7 6 37 37 H 1.08997 * 109.47553 * 293.86014 * 9 7 6 38 38 H 1.09002 * 109.47369 * 53.86462 * 9 7 6 39 39 H 1.08997 * 109.59481 * 247.55099 * 13 12 10 40 40 H 1.09000 * 109.59633 * 8.00577 * 13 12 10 41 41 H 1.08991 * 109.49219 * 174.08759 * 14 13 12 42 42 H 1.09004 * 109.49324 * 294.14326 * 14 13 12 43 43 H 1.08993 * 113.79138 * 22.98692 * 17 16 15 44 44 H 1.09003 * 113.79069 * 154.45185 * 17 16 15 45 45 H 0.96997 * 119.99883 * 180.02562 * 22 21 19 46 46 H 1.09002 * 113.79214 * 270.02862 * 27 18 17 47 47 H 1.09003 * 113.89746 * 138.57465 * 27 18 17 48 48 H 1.09000 * 109.74303 * 348.03828 * 28 12 10 49 49 H 1.09002 * 109.74065 * 108.74863 * 28 12 10 50 50 H 1.07996 * 119.99693 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0002 0.0063 6 6 3.5807 -1.1968 0.0009 7 6 4.3343 -2.5019 0.0018 8 1 3.6260 -3.3304 0.0020 9 6 5.2134 -2.5822 1.2514 10 6 5.2012 -2.5823 -1.2282 11 8 5.4969 -1.5710 -1.8288 12 7 5.6477 -3.7780 -1.6610 13 6 5.2204 -5.0277 -1.0127 14 6 4.6881 -5.9821 -2.0868 15 8 5.6779 -6.1468 -3.1071 16 6 6.0427 -4.9347 -3.7612 17 6 4.9697 -4.4025 -4.7206 18 7 5.6612 -5.1868 -5.7632 19 6 5.2830 -5.7363 -6.9591 20 1 6.0011 -6.2804 -7.5546 21 6 3.9763 -5.5945 -7.4057 22 7 3.1011 -4.9314 -6.6799 23 14 3.4601 -6.3446 -9.0366 24 1 3.6667 -7.8145 -8.9930 25 1 2.0251 -6.0531 -9.2835 26 1 4.2783 -5.7621 -10.1305 27 6 6.9245 -5.1404 -4.9999 28 6 6.5745 -3.8756 -2.8022 29 6 2.1982 -1.1969 0.0005 30 1 -0.3633 0.0003 1.0277 31 1 -0.3634 0.8897 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6583 2.1327 0.0004 34 1 4.1203 2.1329 0.0010 35 1 5.3517 0.0003 0.0111 36 1 5.6741 -3.5684 1.3087 37 1 5.9912 -1.8204 1.1981 38 1 4.6014 -2.4151 2.1377 39 1 6.0696 -5.4853 -0.5054 40 1 4.4323 -4.8140 -0.2907 41 1 4.4659 -6.9493 -1.6361 42 1 3.7799 -5.5673 -2.5242 43 1 3.9641 -4.7586 -4.4969 44 1 5.0158 -3.3249 -4.8779 45 1 2.1880 -4.8326 -6.9918 46 1 7.5522 -4.2823 -5.2402 47 1 7.4737 -6.0819 -4.9973 48 1 6.6329 -2.9142 -3.3124 49 1 7.5639 -4.1664 -2.4492 50 1 1.6582 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053450957.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:24 Heat of formation + Delta-G solvation = -10.067324 kcal Electronic energy + Delta-G solvation = -31169.444170 eV Core-core repulsion = 27162.898228 eV Total energy + Delta-G solvation = -4006.545942 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.93452 -40.81618 -39.62561 -37.76418 -35.81473 -35.39954 -34.29398 -33.15237 -31.55909 -30.65362 -29.38690 -27.94159 -27.61499 -26.88867 -25.48205 -24.66903 -23.65242 -22.98744 -21.94671 -20.45797 -19.76179 -18.84675 -18.37692 -17.69297 -17.32996 -17.07825 -16.90825 -16.37833 -16.11119 -15.87127 -15.75314 -15.62957 -15.07550 -15.02399 -14.88452 -14.55662 -14.42159 -14.22063 -14.10038 -13.89134 -13.43975 -13.34803 -13.12532 -13.08278 -13.02314 -12.88344 -12.74610 -12.66358 -12.57251 -12.41470 -12.07516 -11.98749 -11.88044 -11.72547 -11.70677 -11.42610 -10.98206 -10.81326 -10.66841 -9.69256 -9.53175 -9.44048 -8.97470 -7.93158 -5.28084 0.41837 0.52153 1.41771 1.46535 1.52399 1.58065 1.87247 2.44025 2.63666 2.85989 3.24127 3.32301 3.46246 3.57823 3.63134 3.77006 3.90422 4.01129 4.06306 4.10118 4.19180 4.24277 4.30663 4.33118 4.48534 4.53366 4.60252 4.60672 4.62968 4.68296 4.73003 4.79499 4.84690 4.84998 4.88475 4.90412 4.95121 5.01164 5.10088 5.17603 5.20657 5.23640 5.32152 5.33318 5.43467 5.59592 5.68930 5.71686 5.85946 6.14227 6.31752 6.37128 6.85655 7.11697 7.56013 8.49283 9.23357 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011753 B = 0.003186 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.774790 B = 8786.125067 C =10088.108249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.103 4.103 3 C -0.129 4.129 4 C -0.133 4.133 5 C -0.102 4.102 6 C -0.084 4.084 7 C -0.064 4.064 8 H 0.121 0.879 9 C -0.130 4.130 10 C 0.516 3.484 11 O -0.574 6.574 12 N -0.611 5.611 13 C 0.077 3.923 14 C 0.037 3.963 15 O -0.361 6.361 16 C 0.081 3.919 17 C 0.152 3.848 18 N -0.634 5.634 19 C -0.236 4.236 20 H 0.087 0.913 21 C -0.069 4.069 22 N -0.957 5.957 23 Si 0.983 3.017 24 H -0.273 1.273 25 H -0.294 1.294 26 H -0.276 1.276 27 C 0.134 3.866 28 C 0.108 3.892 29 C -0.126 4.126 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.052 0.948 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.125 0.875 41 H 0.136 0.864 42 H 0.029 0.971 43 H 0.039 0.961 44 H 0.004 0.996 45 H 0.247 0.753 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.079 0.921 49 H 0.100 0.900 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.599 5.112 23.164 23.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.103 4.103 3 C -0.147 4.147 4 C -0.151 4.151 5 C -0.120 4.120 6 C -0.084 4.084 7 C -0.085 4.085 8 H 0.138 0.862 9 C -0.187 4.187 10 C 0.306 3.694 11 O -0.453 6.453 12 N -0.345 5.345 13 C -0.045 4.045 14 C -0.039 4.039 15 O -0.279 6.279 16 C 0.039 3.961 17 C 0.026 3.974 18 N -0.361 5.361 19 C -0.364 4.364 20 H 0.105 0.895 21 C -0.261 4.261 22 N -0.606 5.606 23 Si 0.810 3.190 24 H -0.198 1.198 25 H -0.220 1.220 26 H -0.202 1.202 27 C 0.009 3.991 28 C -0.016 4.016 29 C -0.144 4.144 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.157 0.843 34 H 0.152 0.848 35 H 0.131 0.869 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.126 0.874 40 H 0.143 0.857 41 H 0.154 0.846 42 H 0.048 0.952 43 H 0.057 0.943 44 H 0.022 0.978 45 H 0.056 0.944 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.097 0.903 49 H 0.118 0.882 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.637 5.367 22.549 23.187 hybrid contribution -0.582 0.225 -1.576 1.695 sum 0.055 5.592 20.972 21.705 Atomic orbital electron populations 1.20810 0.89486 1.03237 1.03221 1.20221 0.97453 0.92994 0.99586 1.21315 0.94221 0.98374 1.00768 1.21377 0.94891 0.98350 1.00492 1.21027 0.99805 0.92465 0.98751 1.19548 0.93708 0.94138 1.01052 1.20347 0.97390 0.97174 0.93563 0.86168 1.21747 0.98952 1.03595 0.94443 1.21107 0.79912 0.82270 0.86123 1.90684 1.59689 1.35998 1.58960 1.48253 1.46820 1.06891 1.32488 1.22736 1.02989 0.83312 0.95468 1.23201 0.90365 1.02144 0.88239 1.87883 1.59150 1.29011 1.51882 1.23041 0.96449 0.85736 0.90893 1.22497 0.96357 0.92192 0.86349 1.46181 1.07708 1.60980 1.21188 1.19431 0.95016 1.26638 0.95334 0.89497 1.25684 0.96116 1.01633 1.02674 1.70036 1.03547 1.47152 1.39890 0.85090 0.76561 0.78389 0.78924 1.19842 1.22011 1.20226 1.22712 0.89775 1.00530 0.86117 1.21897 0.93541 0.98982 0.87142 1.21169 0.93178 0.98752 1.01283 0.89680 0.90947 0.91495 0.84322 0.84798 0.86911 0.89529 0.92906 0.89479 0.87381 0.85672 0.84642 0.95250 0.94265 0.97795 0.94393 0.91374 0.91351 0.90305 0.88162 0.84753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 10.01 71.24 0.71 -1.07 16 2 C -0.10 -2.25 5.88 -19.86 -0.12 -2.36 16 3 C -0.13 -2.80 9.70 22.27 0.22 -2.59 16 4 C -0.13 -3.15 10.05 22.27 0.22 -2.93 16 5 C -0.10 -2.70 7.92 22.27 0.18 -2.53 16 6 C -0.08 -2.10 4.59 -19.87 -0.09 -2.19 16 7 C -0.06 -1.34 2.07 -12.29 -0.03 -1.37 16 8 H 0.12 1.98 6.07 -2.39 -0.01 1.96 16 9 C -0.13 -1.88 8.82 71.98 0.63 -1.25 16 10 C 0.52 15.33 6.83 87.65 0.60 15.93 16 11 O -0.57 -22.19 14.11 -3.02 -0.04 -22.24 16 12 N -0.61 -16.96 3.03 -818.70 -2.48 -19.44 16 13 C 0.08 1.50 5.95 86.34 0.51 2.01 16 14 C 0.04 1.03 6.88 72.06 0.50 1.52 16 15 O -0.36 -13.46 10.52 -148.98 -1.57 -15.03 16 16 C 0.08 3.18 1.21 -10.64 -0.01 3.17 16 17 C 0.15 7.91 6.64 86.31 0.57 8.48 16 18 N -0.63 -34.76 3.70 -729.33 -2.70 -37.46 16 19 C -0.24 -13.96 10.70 84.03 0.90 -13.06 16 20 H 0.09 4.85 7.83 -2.91 -0.02 4.83 16 21 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 22 N -0.96 -60.89 11.39 21.65 0.25 -60.64 16 23 Si 0.98 47.49 29.55 68.60 2.03 49.52 16 24 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 25 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 26 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 27 C 0.13 5.64 8.33 86.30 0.72 6.36 16 28 C 0.11 3.49 5.76 86.04 0.50 3.99 16 29 C -0.13 -2.92 9.33 22.27 0.21 -2.71 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 1.05 8.09 -2.39 -0.02 1.03 16 32 H 0.07 1.07 8.09 -2.38 -0.02 1.05 16 33 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 34 H 0.13 2.61 8.06 -2.91 -0.02 2.58 16 35 H 0.11 3.08 7.10 -2.91 -0.02 3.06 16 36 H 0.09 0.89 7.58 -2.39 -0.02 0.87 16 37 H 0.05 0.90 7.60 -2.39 -0.02 0.88 16 38 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.13 1.60 5.45 -2.39 -0.01 1.59 16 41 H 0.14 2.75 8.14 -2.39 -0.02 2.73 16 42 H 0.03 0.99 7.20 -2.38 -0.02 0.97 16 43 H 0.04 2.29 6.31 -2.39 -0.02 2.28 16 44 H 0.00 0.24 7.92 -2.39 -0.02 0.23 16 45 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 46 H 0.07 2.63 8.09 -2.39 -0.02 2.61 16 47 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 48 H 0.08 2.94 6.86 -2.39 -0.02 2.92 16 49 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 50 H 0.13 2.58 7.95 -2.91 -0.02 2.56 16 Total: -1.00 -82.28 395.20 3.10 -79.18 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.93 Total: 20.31 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 6.69 Total: 5.79 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -4.94 Total: -117.54 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -1.61 Total: -37.26 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Total: -82.28 3.10 -79.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053450957.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.111 kcal (2) G-P(sol) polarization free energy of solvation -82.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds