Wall clock time and date at job start Wed Apr 1 2020 04:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38261 * 120.00077 * 2 1 4 4 C 1.38212 * 119.99620 * 180.21429 * 3 2 1 5 5 C 1.38253 * 120.00023 * 359.84877 * 4 3 2 6 6 C 1.38210 * 120.00303 * 359.96242 * 5 4 3 7 7 C 1.38213 * 120.00048 * 179.81350 * 2 1 3 8 8 C 1.50707 * 119.99867 * 359.97438 * 7 2 1 9 9 H 1.09002 * 109.46958 * 353.94063 * 8 7 2 10 10 C 1.52992 * 109.47299 * 233.94077 * 8 7 2 11 11 C 1.50695 * 109.46806 * 113.93452 * 8 7 2 12 12 O 1.21282 * 120.00234 * 34.53165 * 11 8 7 13 13 N 1.34777 * 120.00177 * 214.52794 * 11 8 7 14 14 C 1.47122 * 121.05243 * 354.31323 * 13 11 8 15 15 C 1.53224 * 108.72017 * 232.25616 * 14 13 11 16 16 O 1.43099 * 109.34413 * 305.85725 * 15 14 13 17 17 C 1.42494 * 113.99153 * 59.95439 * 16 15 14 18 18 C 1.53465 * 113.77034 * 73.26292 * 17 16 15 19 19 N 1.47670 * 85.97430 * 91.26921 * 18 17 16 20 20 C 1.36935 * 134.46123 * 204.26485 * 19 18 17 21 21 H 1.07998 * 120.00329 * 185.00030 * 20 19 18 22 22 C 1.38806 * 119.99764 * 5.01020 * 20 19 18 23 23 N 1.31623 * 120.00418 * 5.04173 * 22 20 19 24 24 Si 1.86801 * 120.00021 * 185.04347 * 22 20 19 25 25 H 1.48500 * 109.47228 * 94.99631 * 24 22 20 26 26 H 1.48503 * 109.46993 * 214.99329 * 24 22 20 27 27 H 1.48495 * 109.47068 * 334.99689 * 24 22 20 28 28 C 1.47677 * 91.08484 * 24.29216 * 19 18 17 29 29 C 1.47345 * 121.05270 * 174.33665 * 13 11 8 30 30 H 1.08999 * 109.46922 * 274.32831 * 1 2 3 31 31 H 1.09004 * 109.46776 * 34.32476 * 1 2 3 32 32 H 1.08994 * 109.47213 * 154.33044 * 1 2 3 33 33 H 1.07995 * 119.99879 * 0.03823 * 3 2 1 34 34 H 1.08004 * 119.99369 * 179.83637 * 4 3 2 35 35 H 1.08000 * 119.99633 * 179.97438 * 5 4 3 36 36 H 1.08005 * 120.00007 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.47114 * 184.93363 * 10 8 7 38 38 H 1.09003 * 109.46942 * 304.92437 * 10 8 7 39 39 H 1.09000 * 109.47561 * 64.93012 * 10 8 7 40 40 H 1.09004 * 109.59885 * 112.48249 * 14 13 11 41 41 H 1.09005 * 109.59633 * 352.02637 * 14 13 11 42 42 H 1.09001 * 109.49172 * 65.81705 * 15 14 13 43 43 H 1.08998 * 109.49638 * 185.89656 * 15 14 13 44 44 H 1.08999 * 113.79225 * 205.54002 * 18 17 16 45 45 H 1.09003 * 113.79419 * 337.00625 * 18 17 16 46 46 H 0.96995 * 120.00297 * 180.02562 * 23 22 20 47 47 H 1.09001 * 113.79598 * 221.43501 * 28 19 18 48 48 H 1.09000 * 113.89426 * 89.97806 * 28 19 18 49 49 H 1.09007 * 109.73995 * 251.23974 * 29 13 11 50 50 H 1.08992 * 109.74151 * 11.95680 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1973 -0.0045 5 6 4.2716 -0.0001 -0.0058 6 6 3.5806 -1.1970 -0.0019 7 6 2.1981 -1.1969 0.0039 8 6 1.4445 -2.5021 0.0087 9 1 0.3779 -2.3054 0.1169 10 6 1.9253 -3.3642 1.1776 11 6 1.6921 -3.2298 -1.2875 12 8 2.7722 -3.1468 -1.8328 13 7 0.7132 -3.9729 -1.8407 14 6 -0.5620 -4.1911 -1.1402 15 6 -0.8445 -5.6962 -1.0905 16 8 -0.7924 -6.2323 -2.4163 17 6 0.4659 -6.0591 -3.0622 18 6 1.5707 -6.9762 -2.5206 19 7 1.1503 -7.9280 -3.5684 20 6 1.2401 -9.2857 -3.7229 21 1 0.9160 -9.7470 -4.6440 22 6 1.7476 -10.0690 -2.6954 23 7 2.0496 -9.5208 -1.5375 24 14 2.0019 -11.9011 -2.9561 25 1 3.4072 -12.1526 -3.3648 26 1 1.7173 -12.6252 -1.6912 27 1 1.0836 -12.3820 -4.0193 28 6 0.5948 -6.8289 -4.3834 29 6 0.8866 -4.5929 -3.1661 30 1 -0.3633 0.0776 1.0247 31 1 -0.3633 0.8488 -0.5795 32 1 -0.3633 -0.9262 -0.4451 33 1 1.6584 2.1326 0.0006 34 1 4.1204 2.1326 -0.0071 35 1 5.3516 -0.0001 -0.0097 36 1 4.1206 -2.1324 -0.0025 37 1 1.4445 -4.3414 1.1302 38 1 3.0065 -3.4881 1.1171 39 1 1.6673 -2.8777 2.1182 40 1 -1.3651 -3.6859 -1.6769 41 1 -0.4936 -3.7982 -0.1257 42 1 -0.0944 -6.1868 -0.4701 43 1 -1.8347 -5.8667 -0.6680 44 1 2.5774 -6.5828 -2.6620 45 1 1.3896 -7.3310 -1.5059 46 1 2.4046 -10.0682 -0.8197 47 1 -0.3616 -7.0666 -4.8490 48 1 1.3098 -6.3906 -5.0796 49 1 0.2602 -4.0810 -3.8968 50 1 1.9320 -4.5302 -3.4680 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053539850.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:39 Heat of formation + Delta-G solvation = -5.489250 kcal Electronic energy + Delta-G solvation = -31416.320375 eV Core-core repulsion = 27409.972953 eV Total energy + Delta-G solvation = -4006.347422 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.96736 -40.87512 -39.59671 -37.75800 -35.81044 -35.23638 -34.27616 -33.49696 -31.53779 -30.46759 -29.40678 -27.96204 -27.66127 -26.87787 -25.55607 -24.65353 -23.76187 -22.74815 -21.86769 -20.54173 -19.79662 -18.85311 -18.48876 -17.78022 -17.28263 -17.00771 -16.72097 -16.45183 -16.28644 -15.83751 -15.75558 -15.52189 -15.09671 -14.99568 -14.91022 -14.65633 -14.43521 -14.19723 -14.03692 -13.95026 -13.47498 -13.28677 -13.23766 -13.04120 -12.98845 -12.88545 -12.77405 -12.71701 -12.52533 -12.50378 -12.05823 -11.95239 -11.83345 -11.74172 -11.54797 -11.42508 -11.00274 -10.79634 -10.69215 -9.67852 -9.53272 -9.44414 -8.94678 -7.91496 -5.27818 0.40663 0.53146 1.42120 1.44860 1.53805 1.55243 1.87190 2.43709 2.65259 2.86757 3.23774 3.33079 3.47373 3.58699 3.64921 3.75506 3.88501 4.02216 4.04564 4.08719 4.17707 4.22714 4.28187 4.34012 4.46247 4.47805 4.60675 4.61919 4.63510 4.67350 4.70656 4.79003 4.83089 4.84694 4.90690 4.92486 4.94975 5.00193 5.09519 5.15394 5.21863 5.26466 5.31286 5.36293 5.44652 5.61151 5.66351 5.75491 5.88626 6.15211 6.32175 6.37194 6.86362 7.10189 7.56688 8.50146 9.23428 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019142 B = 0.002784 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.434680 B =10055.035306 C =10518.451783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.084 4.084 3 C -0.131 4.131 4 C -0.118 4.118 5 C -0.146 4.146 6 C -0.102 4.102 7 C -0.091 4.091 8 C -0.065 4.065 9 H 0.135 0.865 10 C -0.139 4.139 11 C 0.517 3.483 12 O -0.576 6.576 13 N -0.612 5.612 14 C 0.075 3.925 15 C 0.040 3.960 16 O -0.361 6.361 17 C 0.082 3.918 18 C 0.143 3.857 19 N -0.633 5.633 20 C -0.234 4.234 21 H 0.085 0.915 22 C -0.069 4.069 23 N -0.952 5.952 24 Si 0.982 3.018 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.264 1.264 28 C 0.133 3.867 29 C 0.108 3.892 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.128 0.872 36 H 0.103 0.897 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.124 0.876 42 H 0.031 0.969 43 H 0.135 0.865 44 H 0.006 0.994 45 H 0.049 0.951 46 H 0.247 0.753 47 H 0.066 0.934 48 H 0.070 0.930 49 H 0.099 0.901 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.148 24.101 6.810 26.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.084 4.084 3 C -0.149 4.149 4 C -0.136 4.136 5 C -0.164 4.164 6 C -0.120 4.120 7 C -0.092 4.092 8 C -0.085 4.085 9 H 0.152 0.848 10 C -0.196 4.196 11 C 0.307 3.693 12 O -0.455 6.455 13 N -0.345 5.345 14 C -0.046 4.046 15 C -0.037 4.037 16 O -0.279 6.279 17 C 0.040 3.960 18 C 0.017 3.983 19 N -0.360 5.360 20 C -0.362 4.362 21 H 0.103 0.897 22 C -0.262 4.262 23 N -0.600 5.600 24 Si 0.809 3.191 25 H -0.217 1.217 26 H -0.219 1.219 27 H -0.189 1.189 28 C 0.008 3.992 29 C -0.016 4.016 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.165 0.835 34 H 0.161 0.839 35 H 0.146 0.854 36 H 0.121 0.879 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.115 0.885 40 H 0.125 0.875 41 H 0.142 0.858 42 H 0.050 0.950 43 H 0.153 0.847 44 H 0.024 0.976 45 H 0.068 0.932 46 H 0.056 0.944 47 H 0.084 0.916 48 H 0.088 0.912 49 H 0.117 0.883 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.699 23.719 6.508 25.491 hybrid contribution 1.294 -1.530 -0.045 2.004 sum -5.405 22.189 6.463 23.734 Atomic orbital electron populations 1.20968 0.89165 1.03605 1.03880 1.20105 0.97593 0.92017 0.98713 1.21308 0.94338 0.98099 1.01134 1.21446 0.94885 0.98277 0.99010 1.21331 1.00604 0.92648 1.01775 1.21070 0.94464 0.98157 0.98313 1.19341 0.93437 0.93424 1.02982 1.20414 1.03396 0.92841 0.91900 0.84801 1.21785 1.01430 0.99266 0.97123 1.21150 0.82979 0.78393 0.86788 1.90669 1.25586 1.64371 1.64836 1.48282 1.16768 1.50355 1.19142 1.22726 0.85181 0.96591 1.00148 1.23167 1.03817 0.92831 0.83900 1.87884 1.30543 1.80562 1.28957 1.23121 0.85338 0.92133 0.95423 1.22628 0.93244 0.87465 0.94993 1.46117 1.67879 1.00999 1.20983 1.19427 1.35686 0.81316 0.99760 0.89688 1.25673 1.02315 1.02655 0.95509 1.70033 1.50538 1.35768 1.03703 0.85013 0.77756 0.79293 0.76990 1.21671 1.21891 1.18873 1.22725 0.97752 0.86329 0.92410 1.22001 1.02783 0.91491 0.85348 0.89071 0.90091 0.91097 0.83524 0.83889 0.85407 0.87923 0.91787 0.93527 0.88537 0.87490 0.85767 0.95042 0.84734 0.97650 0.93238 0.94430 0.91586 0.91223 0.88339 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 9.44 71.24 0.67 -0.68 16 2 C -0.08 -1.54 5.88 -19.86 -0.12 -1.66 16 3 C -0.13 -2.19 9.72 22.27 0.22 -1.97 16 4 C -0.12 -2.14 10.05 22.27 0.22 -1.91 16 5 C -0.15 -3.25 10.05 22.27 0.22 -3.03 16 6 C -0.10 -2.70 7.98 22.27 0.18 -2.52 16 7 C -0.09 -2.12 4.67 -19.87 -0.09 -2.21 16 8 C -0.06 -1.40 1.84 -12.29 -0.02 -1.43 16 9 H 0.13 1.96 3.65 -2.39 -0.01 1.95 16 10 C -0.14 -2.91 8.90 71.98 0.64 -2.27 16 11 C 0.52 15.66 6.70 87.66 0.59 16.25 16 12 O -0.58 -22.59 14.58 -3.03 -0.04 -22.64 16 13 N -0.61 -17.27 3.03 -817.85 -2.48 -19.75 16 14 C 0.08 1.51 6.29 86.34 0.54 2.05 16 15 C 0.04 1.10 6.88 72.06 0.50 1.60 16 16 O -0.36 -13.60 10.52 -148.98 -1.57 -15.17 16 17 C 0.08 3.23 1.21 -10.49 -0.01 3.21 16 18 C 0.14 7.33 6.85 86.31 0.59 7.92 16 19 N -0.63 -34.51 3.69 -729.15 -2.69 -37.20 16 20 C -0.23 -13.75 10.69 84.03 0.90 -12.85 16 21 H 0.09 4.75 7.83 -2.91 -0.02 4.73 16 22 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 23 N -0.95 -59.69 11.30 21.65 0.24 -59.45 16 24 Si 0.98 47.37 29.56 68.60 2.03 49.39 16 25 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 26 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 27 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 28 C 0.13 5.61 8.33 86.30 0.72 6.33 16 29 C 0.11 3.51 5.80 86.18 0.50 4.01 16 30 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.73 8.11 -2.38 -0.02 0.71 16 32 H 0.07 0.76 5.97 -2.39 -0.01 0.75 16 33 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 34 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 35 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 36 H 0.10 3.11 6.75 -2.91 -0.02 3.09 16 37 H 0.06 1.37 8.06 -2.39 -0.02 1.35 16 38 H 0.05 1.18 6.91 -2.39 -0.02 1.16 16 39 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 41 H 0.12 1.65 5.57 -2.38 -0.01 1.64 16 42 H 0.03 1.07 7.20 -2.39 -0.02 1.05 16 43 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 44 H 0.01 0.32 7.94 -2.39 -0.02 0.30 16 45 H 0.05 2.87 6.01 -2.39 -0.01 2.85 16 46 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 47 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 48 H 0.07 2.67 8.09 -2.39 -0.02 2.65 16 49 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 50 H 0.08 2.96 6.88 -2.39 -0.02 2.94 16 Total: -1.00 -81.50 391.08 3.15 -78.35 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.94 Total: 19.23 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 6.71 Total: 7.23 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -4.93 Total: -116.40 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -1.61 Total: -37.81 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.39 kcal Total: -81.50 3.15 -78.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053539850.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.860 kcal (2) G-P(sol) polarization free energy of solvation -81.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds