Wall clock time and date at job start Wed Apr 1 2020 04:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38260 * 120.00331 * 2 1 4 4 C 1.38219 * 119.99967 * 180.25745 * 3 2 1 5 5 C 1.38250 * 119.99969 * 359.53703 * 4 3 2 6 6 C 1.38211 * 120.00206 * 0.42584 * 5 4 3 7 7 C 1.38220 * 120.00125 * 179.97438 * 2 1 3 8 8 C 1.50694 * 119.99639 * 359.97438 * 7 2 1 9 9 H 1.09005 * 109.47179 * 6.12184 * 8 7 2 10 10 C 1.52998 * 109.47087 * 126.11892 * 8 7 2 11 11 C 1.50707 * 109.47265 * 246.12025 * 8 7 2 12 12 O 1.21272 * 119.99631 * 330.55866 * 11 8 7 13 13 N 1.34778 * 119.99883 * 150.55342 * 11 8 7 14 14 C 1.47123 * 121.05610 * 5.15325 * 13 11 8 15 15 C 1.53226 * 108.72197 * 127.77171 * 14 13 11 16 16 O 1.43108 * 109.34729 * 54.13275 * 15 14 13 17 17 C 1.42495 * 113.97213 * 300.03928 * 16 15 14 18 18 C 1.53465 * 113.76706 * 286.79249 * 17 16 15 19 19 N 1.47664 * 85.97231 * 268.71809 * 18 17 16 20 20 C 1.36941 * 134.45474 * 155.74453 * 19 18 17 21 21 H 1.08001 * 119.99469 * 186.32393 * 20 19 18 22 22 C 1.38805 * 120.00005 * 6.32370 * 20 19 18 23 23 N 1.31624 * 120.00055 * 6.50413 * 22 20 19 24 24 Si 1.86803 * 119.99858 * 186.51024 * 22 20 19 25 25 H 1.48494 * 109.47544 * 94.97087 * 24 22 20 26 26 H 1.48508 * 109.46769 * 214.97098 * 24 22 20 27 27 H 1.48500 * 109.46942 * 334.96707 * 24 22 20 28 28 C 1.47677 * 91.08831 * 335.71358 * 19 18 17 29 29 C 1.47338 * 121.05036 * 184.87355 * 13 11 8 30 30 H 1.08998 * 109.47115 * 95.79560 * 1 2 3 31 31 H 1.09000 * 109.47189 * 215.79741 * 1 2 3 32 32 H 1.09005 * 109.46749 * 335.79779 * 1 2 3 33 33 H 1.08003 * 119.99947 * 359.97438 * 3 2 1 34 34 H 1.08006 * 119.99673 * 179.72844 * 4 3 2 35 35 H 1.08000 * 119.99725 * 180.21042 * 5 4 3 36 36 H 1.07999 * 119.99841 * 179.79034 * 6 5 4 37 37 H 1.08998 * 109.47373 * 305.44995 * 10 8 7 38 38 H 1.09006 * 109.47039 * 65.45676 * 10 8 7 39 39 H 1.09004 * 109.47297 * 185.45027 * 10 8 7 40 40 H 1.08997 * 109.59987 * 247.54630 * 14 13 11 41 41 H 1.08998 * 109.59478 * 8.00257 * 14 13 11 42 42 H 1.09012 * 109.49101 * 174.09090 * 15 14 13 43 43 H 1.09004 * 109.49549 * 294.13936 * 15 14 13 44 44 H 1.08994 * 113.79277 * 22.98834 * 18 17 16 45 45 H 1.09008 * 113.78821 * 154.45477 * 18 17 16 46 46 H 0.97001 * 119.99787 * 180.02562 * 23 22 20 47 47 H 1.08996 * 113.78735 * 270.02419 * 28 19 18 48 48 H 1.08996 * 113.89723 * 138.57591 * 28 19 18 49 49 H 1.09001 * 109.75136 * 348.03422 * 29 13 11 50 50 H 1.08997 * 109.74743 * 108.75993 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 -0.0054 5 6 4.2717 -0.0001 -0.0011 6 6 3.5806 -1.1970 -0.0003 7 6 2.1981 -1.1970 0.0005 8 6 1.4446 -2.5020 0.0017 9 1 0.3779 -2.3058 -0.1076 10 6 1.9255 -3.3696 -1.1631 11 6 1.6920 -3.2238 1.3013 12 8 2.7384 -3.0652 1.8933 13 7 0.7502 -4.0456 1.8056 14 6 -0.4792 -4.3427 1.0541 15 6 -0.6496 -5.8632 0.9713 16 8 -0.6073 -6.4175 2.2900 17 6 0.6108 -6.1655 2.9851 18 6 1.7985 -6.9900 2.4707 19 7 1.4115 -7.9887 3.4873 20 6 1.5949 -9.3388 3.6239 21 1 1.1154 -9.8697 4.4330 22 6 2.3971 -10.0250 2.7225 23 7 3.0829 -9.3625 1.8151 24 14 2.5031 -11.8885 2.7970 25 1 1.5331 -12.4783 1.8398 26 1 3.8778 -12.3208 2.4382 27 1 2.1829 -12.3478 4.1725 28 6 0.7480 -6.9478 4.2979 29 6 0.9220 -4.6796 3.1245 30 1 -0.3633 -0.1038 -1.0224 31 1 -0.3633 -0.8335 0.6011 32 1 -0.3633 0.9374 0.4213 33 1 1.6584 2.1327 -0.0004 34 1 4.1205 2.1326 -0.0098 35 1 5.3517 -0.0001 -0.0019 36 1 4.1206 -2.1323 -0.0004 37 1 1.8362 -2.8099 -2.0942 38 1 2.9677 -3.6464 -1.0039 39 1 1.3151 -4.2709 -1.2211 40 1 -1.3360 -3.9062 1.5672 41 1 -0.4023 -3.9283 0.0489 42 1 -1.6088 -6.0971 0.5091 43 1 0.1559 -6.2875 0.3719 44 1 1.6805 -7.3383 1.4447 45 1 2.7680 -6.5273 2.6557 46 1 3.6431 -9.8421 1.1850 47 1 1.4050 -6.4726 5.0264 48 1 -0.2047 -7.2611 4.7248 49 1 1.9496 -4.5499 3.4644 50 1 0.2365 -4.2287 3.8420 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053539851.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:44 Heat of formation + Delta-G solvation = 13.806795 kcal Electronic energy + Delta-G solvation = -31399.304462 eV Core-core repulsion = 27393.793779 eV Total energy + Delta-G solvation = -4005.510683 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.79465 -39.69105 -38.41992 -36.22350 -34.55573 -34.24747 -32.77322 -32.23259 -30.12920 -29.56115 -27.91807 -27.00508 -26.26861 -25.09582 -24.52462 -23.32809 -22.39582 -21.65585 -20.87002 -19.07612 -18.66721 -17.38269 -16.89214 -16.61045 -16.06491 -15.61935 -15.49204 -15.21908 -14.96332 -14.67063 -14.37895 -14.16085 -14.06016 -13.74430 -13.70060 -13.42429 -13.30689 -13.16252 -12.77153 -12.63149 -12.42988 -12.26984 -12.15966 -12.03516 -11.89033 -11.71074 -11.36317 -11.15307 -11.00387 -10.89704 -10.82263 -10.78149 -10.64972 -10.23241 -9.95653 -9.60235 -9.49915 -9.25160 -8.83582 -8.78119 -8.66236 -8.22843 -6.86645 -5.75324 -3.06188 1.22480 1.35607 2.71122 2.97922 3.41177 3.45734 3.48081 3.70106 4.02817 4.42649 4.45083 4.47679 4.69495 4.80076 4.84166 4.89713 4.98682 5.08269 5.09760 5.12212 5.13382 5.24046 5.29788 5.36397 5.36912 5.43775 5.50224 5.55254 5.60829 5.63782 5.69398 5.74090 5.81675 5.93332 5.96502 6.02305 6.04232 6.09899 6.30604 6.38921 6.46197 6.48536 6.50383 6.56156 6.60533 6.94004 7.02381 7.15071 7.46181 7.50111 7.79840 7.98545 8.26292 9.05831 9.72479 10.59952 11.42807 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018480 B = 0.002813 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.808911 B = 9951.005718 C =10520.305337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.081 4.081 3 C -0.127 4.127 4 C -0.117 4.117 5 C -0.129 4.129 6 C -0.076 4.076 7 C -0.072 4.072 8 C -0.075 4.075 9 H 0.101 0.899 10 C -0.140 4.140 11 C 0.524 3.476 12 O -0.529 6.529 13 N -0.610 5.610 14 C 0.071 3.929 15 C 0.047 3.953 16 O -0.342 6.342 17 C 0.049 3.951 18 C 0.160 3.840 19 N -0.602 5.602 20 C -0.219 4.219 21 H 0.081 0.919 22 C -0.008 4.008 23 N -0.921 5.921 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.280 1.280 28 C 0.136 3.864 29 C 0.100 3.900 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.038 0.962 46 H 0.253 0.747 47 H 0.049 0.951 48 H 0.056 0.944 49 H 0.102 0.898 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.836 21.178 -7.289 23.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.081 4.081 3 C -0.145 4.145 4 C -0.135 4.135 5 C -0.147 4.147 6 C -0.094 4.094 7 C -0.072 4.072 8 C -0.096 4.096 9 H 0.119 0.881 10 C -0.198 4.198 11 C 0.311 3.689 12 O -0.404 6.404 13 N -0.344 5.344 14 C -0.052 4.052 15 C -0.031 4.031 16 O -0.260 6.260 17 C 0.007 3.993 18 C 0.034 3.966 19 N -0.328 5.328 20 C -0.347 4.347 21 H 0.099 0.901 22 C -0.204 4.204 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.206 1.206 28 C 0.009 3.991 29 C -0.023 4.023 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.144 0.856 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.109 0.891 42 H 0.119 0.881 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.056 0.944 46 H 0.063 0.937 47 H 0.067 0.933 48 H 0.074 0.926 49 H 0.120 0.880 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.286 20.823 -6.957 22.837 hybrid contribution 0.401 -0.862 -0.101 0.956 sum -5.885 19.961 -7.058 21.974 Atomic orbital electron populations 1.20851 0.91475 1.02807 1.02310 1.19727 0.95820 0.92593 0.99991 1.20923 0.94269 0.97071 1.02242 1.21112 0.94297 0.97957 1.00171 1.21134 0.99916 0.92454 1.01210 1.21054 0.93510 0.98419 0.96435 1.19207 0.93726 0.92530 1.01784 1.20359 1.01516 0.93459 0.94237 0.88071 1.21785 1.02806 0.99034 0.96164 1.20390 0.83263 0.78877 0.86350 1.90699 1.25025 1.63643 1.61078 1.48132 1.19758 1.46739 1.19735 1.22496 0.87286 0.98179 0.97269 1.22870 1.02874 0.90851 0.86525 1.87934 1.35409 1.76224 1.26386 1.23599 0.87742 0.91013 0.96954 1.22544 0.92150 0.86319 0.95596 1.45868 1.64273 1.01956 1.20753 1.19014 1.23884 0.80562 1.11235 0.90116 1.24798 0.98510 0.98115 0.99007 1.69847 1.31891 1.33872 1.21198 0.86099 0.76938 0.85103 0.77611 1.21613 1.21767 1.20557 1.22488 0.96662 0.88578 0.91365 1.22148 1.03739 0.92868 0.83551 0.90995 0.91428 0.91494 0.86288 0.86341 0.86162 0.85592 0.91181 0.91330 0.91465 0.90649 0.89122 0.88100 0.92191 0.91902 0.94401 0.93720 0.93341 0.92603 0.87983 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.14 36.00 0.33 -0.59 16 2 C -0.08 -0.86 5.88 -104.62 -0.62 -1.47 16 3 C -0.13 -1.25 9.68 -39.58 -0.38 -1.64 16 4 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 5 C -0.13 -1.45 10.05 -39.59 -0.40 -1.85 16 6 C -0.08 -0.98 8.02 -39.59 -0.32 -1.29 16 7 C -0.07 -0.87 4.62 -104.63 -0.48 -1.35 16 8 C -0.07 -0.85 1.78 -92.92 -0.17 -1.01 16 9 H 0.10 0.91 4.13 -51.93 -0.21 0.69 16 10 C -0.14 -1.47 8.69 37.16 0.32 -1.14 16 11 C 0.52 7.91 6.76 -10.98 -0.07 7.83 16 12 O -0.53 -9.94 14.57 5.56 0.08 -9.86 16 13 N -0.61 -8.85 3.03 -172.70 -0.52 -9.38 16 14 C 0.07 0.80 6.30 -3.58 -0.02 0.78 16 15 C 0.05 0.66 6.88 37.27 0.26 0.91 16 16 O -0.34 -6.40 10.52 -35.23 -0.37 -6.77 16 17 C 0.05 0.94 1.21 -90.53 -0.11 0.83 16 18 C 0.16 3.89 6.45 -3.17 -0.02 3.87 16 19 N -0.60 -15.93 3.69 -180.34 -0.67 -16.59 16 20 C -0.22 -6.31 10.69 -15.06 -0.16 -6.47 16 21 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 22 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 23 N -0.92 -27.94 11.71 55.49 0.65 -27.29 16 24 Si 0.91 22.58 29.56 -169.99 -5.02 17.55 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 28 C 0.14 2.85 8.33 -3.18 -0.03 2.83 16 29 C 0.10 1.65 5.76 -3.86 -0.02 1.63 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.53 6.55 -51.93 -0.34 0.19 16 32 H 0.07 0.45 8.05 -51.93 -0.42 0.03 16 33 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 34 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 35 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 36 H 0.13 1.72 6.96 -52.49 -0.37 1.35 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.82 7.29 -51.93 -0.38 0.44 16 39 H 0.07 0.66 7.47 -51.93 -0.39 0.28 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 0.77 5.07 -51.93 -0.26 0.50 16 42 H 0.10 1.13 8.14 -51.92 -0.42 0.71 16 43 H 0.06 0.95 7.20 -51.93 -0.37 0.58 16 44 H 0.06 1.68 6.78 -51.93 -0.35 1.33 16 45 H 0.04 0.99 7.92 -51.92 -0.41 0.58 16 46 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.05 0.96 8.09 -51.93 -0.42 0.54 16 48 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 49 H 0.10 1.86 6.86 -51.93 -0.36 1.50 16 50 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 391.73 15.07 5.90 5.90 Total: -1.00 -35.27 391.73 -9.97 -45.24 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -7.63 Total: 1.23 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -2.38 Total: -0.03 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -0.54 Total: -53.26 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.29 Total: -16.63 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.27 -9.97 -45.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053539851.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.043 kcal (2) G-P(sol) polarization free energy of solvation -35.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds