Wall clock time and date at job start Wed Apr 1 2020 04:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38260 * 120.00331 * 2 1 4 4 C 1.38219 * 119.99967 * 180.25745 * 3 2 1 5 5 C 1.38250 * 119.99969 * 359.53703 * 4 3 2 6 6 C 1.38211 * 120.00206 * 0.42584 * 5 4 3 7 7 C 1.38220 * 120.00125 * 179.97438 * 2 1 3 8 8 C 1.50694 * 119.99639 * 359.97438 * 7 2 1 9 9 H 1.09005 * 109.47179 * 6.12184 * 8 7 2 10 10 C 1.52998 * 109.47087 * 126.11892 * 8 7 2 11 11 C 1.50707 * 109.47265 * 246.12025 * 8 7 2 12 12 O 1.21272 * 119.99631 * 330.55866 * 11 8 7 13 13 N 1.34778 * 119.99883 * 150.55342 * 11 8 7 14 14 C 1.47123 * 121.05610 * 5.15325 * 13 11 8 15 15 C 1.53226 * 108.72197 * 127.77171 * 14 13 11 16 16 O 1.43108 * 109.34729 * 54.13275 * 15 14 13 17 17 C 1.42495 * 113.97213 * 300.03928 * 16 15 14 18 18 C 1.53465 * 113.76706 * 286.79249 * 17 16 15 19 19 N 1.47664 * 85.97231 * 268.71809 * 18 17 16 20 20 C 1.36941 * 134.45474 * 155.74453 * 19 18 17 21 21 H 1.08001 * 119.99469 * 186.32393 * 20 19 18 22 22 C 1.38805 * 120.00005 * 6.32370 * 20 19 18 23 23 N 1.31624 * 120.00055 * 6.50413 * 22 20 19 24 24 Si 1.86803 * 119.99858 * 186.51024 * 22 20 19 25 25 H 1.48494 * 109.47544 * 94.97087 * 24 22 20 26 26 H 1.48508 * 109.46769 * 214.97098 * 24 22 20 27 27 H 1.48500 * 109.46942 * 334.96707 * 24 22 20 28 28 C 1.47677 * 91.08831 * 335.71358 * 19 18 17 29 29 C 1.47338 * 121.05036 * 184.87355 * 13 11 8 30 30 H 1.08998 * 109.47115 * 95.79560 * 1 2 3 31 31 H 1.09000 * 109.47189 * 215.79741 * 1 2 3 32 32 H 1.09005 * 109.46749 * 335.79779 * 1 2 3 33 33 H 1.08003 * 119.99947 * 359.97438 * 3 2 1 34 34 H 1.08006 * 119.99673 * 179.72844 * 4 3 2 35 35 H 1.08000 * 119.99725 * 180.21042 * 5 4 3 36 36 H 1.07999 * 119.99841 * 179.79034 * 6 5 4 37 37 H 1.08998 * 109.47373 * 305.44995 * 10 8 7 38 38 H 1.09006 * 109.47039 * 65.45676 * 10 8 7 39 39 H 1.09004 * 109.47297 * 185.45027 * 10 8 7 40 40 H 1.08997 * 109.59987 * 247.54630 * 14 13 11 41 41 H 1.08998 * 109.59478 * 8.00257 * 14 13 11 42 42 H 1.09012 * 109.49101 * 174.09090 * 15 14 13 43 43 H 1.09004 * 109.49549 * 294.13936 * 15 14 13 44 44 H 1.08994 * 113.79277 * 22.98834 * 18 17 16 45 45 H 1.09008 * 113.78821 * 154.45477 * 18 17 16 46 46 H 0.97001 * 119.99787 * 180.02562 * 23 22 20 47 47 H 1.08996 * 113.78735 * 270.02419 * 28 19 18 48 48 H 1.08996 * 113.89723 * 138.57591 * 28 19 18 49 49 H 1.09001 * 109.75136 * 348.03422 * 29 13 11 50 50 H 1.08997 * 109.74743 * 108.75993 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 -0.0054 5 6 4.2717 -0.0001 -0.0011 6 6 3.5806 -1.1970 -0.0003 7 6 2.1981 -1.1970 0.0005 8 6 1.4446 -2.5020 0.0017 9 1 0.3779 -2.3058 -0.1076 10 6 1.9255 -3.3696 -1.1631 11 6 1.6920 -3.2238 1.3013 12 8 2.7384 -3.0652 1.8933 13 7 0.7502 -4.0456 1.8056 14 6 -0.4792 -4.3427 1.0541 15 6 -0.6496 -5.8632 0.9713 16 8 -0.6073 -6.4175 2.2900 17 6 0.6108 -6.1655 2.9851 18 6 1.7985 -6.9900 2.4707 19 7 1.4115 -7.9887 3.4873 20 6 1.5949 -9.3388 3.6239 21 1 1.1154 -9.8697 4.4330 22 6 2.3971 -10.0250 2.7225 23 7 3.0829 -9.3625 1.8151 24 14 2.5031 -11.8885 2.7970 25 1 1.5331 -12.4783 1.8398 26 1 3.8778 -12.3208 2.4382 27 1 2.1829 -12.3478 4.1725 28 6 0.7480 -6.9478 4.2979 29 6 0.9220 -4.6796 3.1245 30 1 -0.3633 -0.1038 -1.0224 31 1 -0.3633 -0.8335 0.6011 32 1 -0.3633 0.9374 0.4213 33 1 1.6584 2.1327 -0.0004 34 1 4.1205 2.1326 -0.0098 35 1 5.3517 -0.0001 -0.0019 36 1 4.1206 -2.1323 -0.0004 37 1 1.8362 -2.8099 -2.0942 38 1 2.9677 -3.6464 -1.0039 39 1 1.3151 -4.2709 -1.2211 40 1 -1.3360 -3.9062 1.5672 41 1 -0.4023 -3.9283 0.0489 42 1 -1.6088 -6.0971 0.5091 43 1 0.1559 -6.2875 0.3719 44 1 1.6805 -7.3383 1.4447 45 1 2.7680 -6.5273 2.6557 46 1 3.6431 -9.8421 1.1850 47 1 1.4050 -6.4726 5.0264 48 1 -0.2047 -7.2611 4.7248 49 1 1.9496 -4.5499 3.4644 50 1 0.2365 -4.2287 3.8420 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053539851.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:43 Heat of formation + Delta-G solvation = -8.604958 kcal Electronic energy + Delta-G solvation = -31400.276308 eV Core-core repulsion = 27393.793779 eV Total energy + Delta-G solvation = -4006.482529 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.98436 -40.89141 -39.60230 -37.77086 -35.82561 -35.23255 -34.29368 -33.50231 -31.56138 -30.46810 -29.42190 -27.95574 -27.65420 -26.91388 -25.55049 -24.66909 -23.77257 -22.75326 -21.87688 -20.56023 -19.81585 -18.84068 -18.45573 -17.79278 -17.28520 -17.03113 -16.73356 -16.46955 -16.28956 -15.83126 -15.75278 -15.54398 -15.12364 -15.00475 -14.92668 -14.65256 -14.43211 -14.21126 -14.04027 -13.94527 -13.46866 -13.29620 -13.25152 -13.03938 -12.97340 -12.90302 -12.80949 -12.71484 -12.56673 -12.51608 -12.08689 -11.95510 -11.83047 -11.74046 -11.58295 -11.43353 -10.96723 -10.83706 -10.70000 -9.67772 -9.54395 -9.44714 -8.98710 -7.95747 -5.29179 0.40800 0.53403 1.41719 1.44649 1.53592 1.55162 1.86812 2.43398 2.62589 2.86759 3.23932 3.30486 3.46793 3.57961 3.62792 3.76100 3.88630 4.02238 4.05392 4.09340 4.17464 4.21578 4.27443 4.32552 4.45412 4.48115 4.59834 4.61988 4.62802 4.68751 4.70543 4.78262 4.82345 4.83388 4.89634 4.92476 4.94093 4.99633 5.09292 5.13694 5.15790 5.22815 5.31107 5.35724 5.42248 5.61546 5.66201 5.74981 5.83957 6.15155 6.30253 6.35672 6.84730 7.10499 7.54799 8.48744 9.22131 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018480 B = 0.002813 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.808911 B = 9951.005718 C =10520.305337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.085 4.085 3 C -0.131 4.131 4 C -0.119 4.119 5 C -0.146 4.146 6 C -0.101 4.101 7 C -0.090 4.090 8 C -0.063 4.063 9 H 0.135 0.865 10 C -0.139 4.139 11 C 0.517 3.483 12 O -0.576 6.576 13 N -0.612 5.612 14 C 0.074 3.926 15 C 0.038 3.962 16 O -0.360 6.360 17 C 0.082 3.918 18 C 0.161 3.839 19 N -0.633 5.633 20 C -0.234 4.234 21 H 0.087 0.913 22 C -0.070 4.070 23 N -0.957 5.957 24 Si 0.983 3.017 25 H -0.285 1.285 26 H -0.295 1.295 27 H -0.264 1.264 28 C 0.133 3.867 29 C 0.108 3.892 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.127 0.873 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.040 0.960 39 H 0.073 0.927 40 H 0.108 0.892 41 H 0.125 0.875 42 H 0.138 0.862 43 H 0.032 0.968 44 H 0.028 0.972 45 H 0.007 0.993 46 H 0.247 0.753 47 H 0.065 0.935 48 H 0.070 0.930 49 H 0.077 0.923 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.103 23.221 -7.671 26.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.085 4.085 3 C -0.149 4.149 4 C -0.137 4.137 5 C -0.164 4.164 6 C -0.119 4.119 7 C -0.091 4.091 8 C -0.083 4.083 9 H 0.153 0.847 10 C -0.196 4.196 11 C 0.306 3.694 12 O -0.455 6.455 13 N -0.346 5.346 14 C -0.047 4.047 15 C -0.039 4.039 16 O -0.278 6.278 17 C 0.040 3.960 18 C 0.035 3.965 19 N -0.360 5.360 20 C -0.362 4.362 21 H 0.105 0.895 22 C -0.262 4.262 23 N -0.606 5.606 24 Si 0.810 3.190 25 H -0.212 1.212 26 H -0.222 1.222 27 H -0.188 1.188 28 C 0.008 3.992 29 C -0.016 4.016 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.165 0.835 34 H 0.161 0.839 35 H 0.145 0.855 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.059 0.941 39 H 0.092 0.908 40 H 0.126 0.874 41 H 0.143 0.857 42 H 0.156 0.844 43 H 0.050 0.950 44 H 0.047 0.953 45 H 0.024 0.976 46 H 0.056 0.944 47 H 0.083 0.917 48 H 0.088 0.912 49 H 0.096 0.904 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.604 22.883 -7.332 25.878 hybrid contribution 1.423 -1.455 0.012 2.035 sum -8.181 21.428 -7.321 24.077 Atomic orbital electron populations 1.20936 0.89097 1.03725 1.03687 1.20110 0.97614 0.91996 0.98749 1.21332 0.94320 0.98103 1.01117 1.21444 0.94914 0.98239 0.99071 1.21326 1.00576 0.92696 1.01808 1.21042 0.94503 0.98063 0.98338 1.19345 0.93398 0.93530 1.02822 1.20375 1.03345 0.92782 0.91836 0.84738 1.21794 1.01224 0.99592 0.97019 1.21162 0.82427 0.78638 0.87161 1.90679 1.26963 1.65229 1.62599 1.48278 1.20857 1.46192 1.19224 1.22737 0.86684 0.96059 0.99244 1.23212 1.03865 0.92777 0.84051 1.87891 1.34080 1.77391 1.28421 1.23025 0.85886 0.92121 0.95013 1.22358 0.93181 0.87298 0.93641 1.46277 1.64639 1.02293 1.22760 1.19464 1.23387 0.82236 1.11088 0.89484 1.25717 0.98619 1.02962 0.98937 1.70058 1.32902 1.35509 1.22139 0.84997 0.76446 0.79262 0.78252 1.21176 1.22209 1.18843 1.22708 0.96911 0.87353 0.92262 1.21890 1.03088 0.91009 0.85623 0.89064 0.91236 0.90060 0.83499 0.83909 0.85494 0.88161 0.88811 0.94101 0.90835 0.87431 0.85719 0.84405 0.94993 0.95335 0.97559 0.94377 0.91703 0.91153 0.90449 0.88254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 9.14 71.23 0.65 -0.68 16 2 C -0.08 -1.57 5.88 -19.86 -0.12 -1.68 16 3 C -0.13 -2.23 9.68 22.27 0.22 -2.01 16 4 C -0.12 -2.20 10.05 22.27 0.22 -1.97 16 5 C -0.15 -3.35 10.05 22.27 0.22 -3.13 16 6 C -0.10 -2.73 8.02 22.27 0.18 -2.55 16 7 C -0.09 -2.12 4.62 -19.87 -0.09 -2.21 16 8 C -0.06 -1.34 1.78 -12.29 -0.02 -1.36 16 9 H 0.14 1.90 4.13 -2.38 -0.01 1.89 16 10 C -0.14 -2.85 8.69 71.98 0.63 -2.23 16 11 C 0.52 15.63 6.76 87.66 0.59 16.22 16 12 O -0.58 -22.86 14.57 -3.01 -0.04 -22.90 16 13 N -0.61 -17.09 3.03 -818.70 -2.48 -19.57 16 14 C 0.07 1.43 6.30 86.34 0.54 1.97 16 15 C 0.04 1.00 6.88 72.06 0.50 1.49 16 16 O -0.36 -13.05 10.52 -148.98 -1.57 -14.62 16 17 C 0.08 3.18 1.21 -10.64 -0.01 3.17 16 18 C 0.16 8.32 6.45 86.31 0.56 8.87 16 19 N -0.63 -34.53 3.69 -729.35 -2.69 -37.22 16 20 C -0.23 -13.74 10.69 84.03 0.90 -12.85 16 21 H 0.09 4.85 7.84 -2.91 -0.02 4.83 16 22 C -0.07 -4.16 5.49 84.86 0.47 -3.69 16 23 N -0.96 -60.84 11.71 21.65 0.25 -60.59 16 24 Si 0.98 47.43 29.56 68.60 2.03 49.46 16 25 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 26 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 27 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 28 C 0.13 5.59 8.33 86.30 0.72 6.31 16 29 C 0.11 3.51 5.76 86.04 0.50 4.01 16 30 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.77 6.55 -2.39 -0.02 0.75 16 32 H 0.08 0.71 8.05 -2.38 -0.02 0.69 16 33 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 35 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.10 3.10 6.96 -2.91 -0.02 3.08 16 37 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.04 1.06 7.29 -2.38 -0.02 1.04 16 39 H 0.07 1.39 7.47 -2.38 -0.02 1.37 16 40 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.12 1.56 5.07 -2.39 -0.01 1.55 16 42 H 0.14 2.61 8.14 -2.38 -0.02 2.59 16 43 H 0.03 1.02 7.20 -2.39 -0.02 1.01 16 44 H 0.03 1.63 6.78 -2.39 -0.02 1.62 16 45 H 0.01 0.38 7.92 -2.38 -0.02 0.36 16 46 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 47 H 0.07 2.54 8.09 -2.39 -0.02 2.52 16 48 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 49 H 0.08 2.94 6.86 -2.39 -0.02 2.92 16 50 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -82.76 391.73 3.08 -79.69 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.94 Total: 18.08 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 6.64 Total: 7.67 kcal Atomic # 7 Polarization: -112.46 SS G_CDS: -4.92 Total: -117.38 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -1.61 Total: -37.52 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -82.76 3.08 -79.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053539851.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.082 kcal (2) G-P(sol) polarization free energy of solvation -82.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds