Wall clock time and date at job start Wed Apr 1 2020 03:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38382 * 119.85601 * 2 1 4 4 C 1.37940 * 120.14545 * 179.97438 * 3 2 1 5 5 C 1.39597 * 119.84979 * 0.02562 * 4 3 2 6 6 C 1.47847 * 120.13853 * 179.97438 * 5 4 3 7 7 O 1.21556 * 119.99652 * 173.74953 * 6 5 4 8 8 N 1.34777 * 120.00156 * 353.76152 * 6 5 4 9 9 C 1.46501 * 119.99852 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.46802 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.82477 * 59.44673 * 10 9 8 12 12 C 1.54477 * 109.90557 * 180.37730 * 10 9 8 13 13 C 1.55510 * 102.38396 * 140.92447 * 12 10 9 14 14 C 1.53889 * 100.76007 * 327.02733 * 13 12 10 15 15 C 1.52374 * 115.67848 * 263.23582 * 14 13 12 16 16 N 1.47273 * 87.70039 * 218.74435 * 15 14 13 17 17 C 1.36942 * 135.93807 * 205.92314 * 16 15 14 18 18 H 1.07998 * 119.99621 * 359.97438 * 17 16 15 19 19 C 1.38807 * 120.00227 * 180.02562 * 17 16 15 20 20 N 1.31623 * 120.00074 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00080 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47121 * 59.99730 * 21 19 17 23 23 H 1.48500 * 109.47205 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47265 * 299.99641 * 21 19 17 25 25 C 1.47272 * 88.12977 * 26.18039 * 16 15 14 26 26 O 1.42404 * 106.66727 * 34.97823 * 14 13 12 27 27 C 1.39550 * 119.71250 * 0.25193 * 5 4 3 28 28 C 1.50706 * 120.07067 * 179.75042 * 27 5 4 29 29 C 1.37974 * 119.85536 * 359.48803 * 27 5 4 30 30 H 1.09002 * 109.46852 * 90.00178 * 1 2 3 31 31 H 1.09002 * 109.47279 * 209.99931 * 1 2 3 32 32 H 1.09001 * 109.46819 * 330.00807 * 1 2 3 33 33 H 1.08000 * 119.92501 * 359.97438 * 3 2 1 34 34 H 1.07992 * 120.06913 * 180.02562 * 4 3 2 35 35 H 0.96995 * 119.99888 * 359.97438 * 8 6 5 36 36 H 1.09006 * 109.46613 * 60.00113 * 9 8 6 37 37 H 1.08996 * 109.47578 * 299.99850 * 9 8 6 38 38 H 1.08997 * 110.82595 * 259.14925 * 12 10 9 39 39 H 1.09001 * 110.82220 * 22.50647 * 12 10 9 40 40 H 1.09002 * 111.15914 * 209.15528 * 13 12 10 41 41 H 1.08999 * 111.16194 * 84.90967 * 13 12 10 42 42 H 1.09000 * 113.51163 * 104.03902 * 15 14 13 43 43 H 1.08998 * 113.51574 * 333.45261 * 15 14 13 44 44 H 0.97002 * 120.00031 * 179.97438 * 20 19 17 45 45 H 1.09000 * 113.51391 * 88.52745 * 25 16 15 46 46 H 1.08998 * 113.51796 * 219.11336 * 25 16 15 47 47 H 1.08993 * 109.47476 * 83.40321 * 28 27 5 48 48 H 1.08999 * 109.46996 * 203.41150 * 28 27 5 49 49 H 1.09003 * 109.46773 * 323.40475 * 28 27 5 50 50 H 1.08001 * 119.93262 * 180.25135 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2002 0.0000 4 6 3.5753 1.2071 0.0005 5 6 4.2762 -0.0001 0.0005 6 6 5.7547 -0.0001 0.0005 7 8 6.3624 -1.0466 0.1151 8 7 6.4286 1.1602 -0.1263 9 6 7.8936 1.1602 -0.1257 10 6 8.4036 2.5941 -0.2833 11 1 8.0350 3.2097 0.5372 12 6 9.9483 2.6048 -0.2934 13 6 10.2673 3.6768 -1.3739 14 6 9.0851 3.4738 -2.3379 15 6 9.3619 2.5850 -3.5442 16 7 8.5392 3.5112 -4.3407 17 6 7.7872 3.4264 -5.4820 18 1 7.7116 2.4875 -6.0103 19 6 7.1230 4.5475 -5.9604 20 7 7.2156 5.6919 -5.3168 21 14 6.0978 4.4320 -7.5176 22 1 5.0187 3.4299 -7.3266 23 1 5.4957 5.7569 -7.8133 24 1 6.9635 4.0173 -8.6506 25 6 8.8841 4.5700 -3.3769 26 8 7.9580 3.1347 -1.5363 27 6 3.5754 -1.2068 -0.0053 28 6 4.3239 -2.5148 -0.0111 29 6 2.1956 -1.1998 -0.0004 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8901 0.5137 33 1 1.6524 2.1334 -0.0004 34 1 4.1117 2.1444 0.0010 35 1 5.9436 1.9952 -0.2180 36 1 8.2572 0.5525 -0.9544 37 1 8.2566 0.7464 0.8150 38 1 10.3402 2.9053 0.6782 39 1 10.3406 1.6299 -0.5829 40 1 11.2170 3.4684 -1.8666 41 1 10.2594 4.6799 -0.9473 42 1 8.9323 1.5871 -3.4568 43 1 10.4105 2.5694 -3.8413 44 1 6.7518 6.4754 -5.6514 45 1 9.8003 5.1047 -3.6277 46 1 8.0536 5.2381 -3.1491 47 1 4.6064 -2.7763 1.0086 48 1 3.6860 -3.2967 -0.4233 49 1 5.2208 -2.4175 -0.6229 50 1 1.6520 -2.1330 -0.0008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053694114.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:35 Heat of formation + Delta-G solvation = 2.589928 kcal Electronic energy + Delta-G solvation = -30298.975653 eV Core-core repulsion = 26292.978571 eV Total energy + Delta-G solvation = -4005.997083 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.48708 -39.93511 -38.49300 -36.57431 -34.59607 -33.44670 -32.33425 -32.13559 -31.73673 -29.45022 -27.73143 -27.25716 -26.52917 -24.74809 -24.02333 -22.75171 -21.74095 -21.39799 -21.07824 -20.09729 -18.96449 -17.81507 -16.68781 -16.54639 -16.22860 -15.26099 -15.18593 -15.07657 -15.03232 -14.90579 -14.52027 -14.13725 -13.96100 -13.66644 -13.45738 -13.25260 -13.18596 -12.93028 -12.80358 -12.72072 -12.60322 -12.25148 -11.97653 -11.81478 -11.75718 -11.66698 -11.47412 -11.23922 -11.12804 -11.08769 -10.98790 -10.78342 -10.44568 -10.05930 -9.68584 -9.56599 -9.48364 -9.06348 -8.93704 -8.84073 -8.69396 -8.64419 -6.84574 -5.72350 -3.03673 0.77198 1.24888 2.86059 3.20159 3.42893 3.46483 3.47759 3.75683 4.06608 4.48523 4.55703 4.59707 4.67494 4.73308 4.77796 4.83740 5.02669 5.08652 5.15903 5.17390 5.29856 5.35135 5.40172 5.41545 5.47772 5.50507 5.58079 5.64015 5.67998 5.72372 5.75627 5.82112 5.84830 5.88411 6.04672 6.14010 6.15264 6.17153 6.26161 6.37595 6.40138 6.45034 6.56140 6.58822 6.67841 6.79257 6.96114 7.22027 7.53824 7.58769 7.78675 8.02075 8.28537 9.07709 9.74581 10.66974 11.45502 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008442 B = 0.003357 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3316.047755 B = 8338.968314 C =10583.899481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.059 4.059 3 C -0.136 4.136 4 C -0.073 4.073 5 C -0.144 4.144 6 C 0.558 3.442 7 O -0.540 6.540 8 N -0.714 5.714 9 C 0.115 3.885 10 C 0.063 3.937 11 H 0.081 0.919 12 C -0.144 4.144 13 C -0.137 4.137 14 C 0.059 3.941 15 C 0.105 3.895 16 N -0.602 5.602 17 C -0.214 4.214 18 H 0.079 0.921 19 C -0.007 4.007 20 N -0.921 5.921 21 Si 0.912 3.088 22 H -0.284 1.284 23 H -0.289 1.289 24 H -0.285 1.285 25 C 0.164 3.836 26 O -0.330 6.330 27 C -0.019 4.019 28 C -0.120 4.120 29 C -0.136 4.136 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.405 0.595 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.042 0.958 43 H 0.040 0.960 44 H 0.253 0.747 45 H 0.039 0.961 46 H 0.078 0.922 47 H 0.073 0.927 48 H 0.055 0.945 49 H 0.096 0.904 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.186 -9.155 16.592 19.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.059 4.059 3 C -0.154 4.154 4 C -0.092 4.092 5 C -0.147 4.147 6 C 0.346 3.654 7 O -0.420 6.420 8 N -0.365 5.365 9 C -0.009 4.009 10 C 0.004 3.996 11 H 0.099 0.901 12 C -0.182 4.182 13 C -0.175 4.175 14 C 0.018 3.982 15 C -0.022 4.022 16 N -0.327 5.327 17 C -0.341 4.341 18 H 0.097 0.903 19 C -0.203 4.203 20 N -0.568 5.568 21 Si 0.742 3.258 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.212 1.212 25 C 0.038 3.962 26 O -0.249 6.249 27 C -0.020 4.020 28 C -0.176 4.176 29 C -0.154 4.154 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.241 0.759 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.056 0.944 46 H 0.096 0.904 47 H 0.092 0.908 48 H 0.074 0.926 49 H 0.114 0.886 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.180 -9.734 16.319 19.695 hybrid contribution -0.517 0.501 -0.975 1.212 sum -5.697 -9.233 15.344 18.792 Atomic orbital electron populations 1.20858 0.90960 1.02915 1.02705 1.20117 0.96253 0.93115 0.96437 1.20967 0.93876 0.97844 1.02694 1.21339 0.94595 0.97083 0.96139 1.19772 0.92826 0.93982 1.08116 1.18235 0.87094 0.83631 0.76415 1.90695 1.70094 1.30813 1.50401 1.45792 1.07452 1.09555 1.73720 1.21806 0.79737 0.97153 1.02225 1.23060 0.94557 0.92978 0.88988 0.90074 1.23056 0.94198 1.00645 1.00278 1.22976 0.99399 0.99026 0.96136 1.23343 0.84286 1.00171 0.90396 1.22758 0.94825 0.95186 0.89447 1.45450 1.52861 1.06489 1.27947 1.18857 1.20640 0.95812 0.98818 0.90300 1.24745 1.00805 0.95482 0.99292 1.69812 1.46697 1.00011 1.40281 0.86206 0.80130 0.76683 0.82803 1.21105 1.21519 1.21203 1.22076 0.98852 0.91726 0.83577 1.88384 1.29338 1.81432 1.25701 1.20019 0.93342 0.94880 0.93798 1.21071 1.00898 0.92143 1.03483 1.20903 0.93157 0.97790 1.03558 0.90721 0.91394 0.91269 0.85413 0.85366 0.75898 0.90870 0.90779 0.90260 0.90310 0.89918 0.90319 0.93948 0.94224 0.93680 0.94390 0.90415 0.90818 0.92609 0.88560 0.85566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 10.01 36.01 0.36 -0.50 16 2 C -0.06 -0.60 5.89 -104.53 -0.62 -1.22 16 3 C -0.14 -1.47 9.68 -39.64 -0.38 -1.85 16 4 C -0.07 -0.88 9.53 -39.18 -0.37 -1.26 16 5 C -0.14 -1.98 5.87 -104.97 -0.62 -2.60 16 6 C 0.56 8.52 7.70 -12.33 -0.09 8.42 16 7 O -0.54 -9.31 13.35 5.32 0.07 -9.23 16 8 N -0.71 -10.06 5.42 -61.25 -0.33 -10.40 16 9 C 0.11 1.55 5.24 -4.04 -0.02 1.53 16 10 C 0.06 0.84 3.61 -25.96 -0.09 0.75 16 11 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 12 C -0.14 -1.64 6.56 -24.62 -0.16 -1.80 16 13 C -0.14 -1.88 6.49 -24.93 -0.16 -2.04 16 14 C 0.06 1.11 1.55 -90.81 -0.14 0.97 16 15 C 0.10 2.22 8.25 -7.88 -0.06 2.15 16 16 N -0.60 -15.98 3.79 -185.01 -0.70 -16.68 16 17 C -0.21 -6.22 10.74 -15.06 -0.16 -6.38 16 18 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 19 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 20 N -0.92 -27.72 11.52 55.49 0.64 -27.08 16 21 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 22 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 C 0.16 3.88 6.94 -7.88 -0.05 3.83 16 26 O -0.33 -6.16 10.68 -35.23 -0.38 -6.53 16 27 C -0.02 -0.25 5.91 -104.23 -0.62 -0.87 16 28 C -0.12 -1.46 8.73 36.01 0.31 -1.14 16 29 C -0.14 -1.48 9.31 -39.64 -0.37 -1.85 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 33 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.13 1.37 6.46 -52.49 -0.34 1.03 16 35 H 0.40 5.35 6.47 -40.82 -0.26 5.09 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.86 7.85 -51.93 -0.41 0.45 16 40 H 0.08 1.04 7.93 -51.93 -0.41 0.63 16 41 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.04 0.78 7.98 -51.93 -0.41 0.37 16 44 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.04 0.89 8.13 -51.93 -0.42 0.46 16 46 H 0.08 2.08 7.17 -51.93 -0.37 1.71 16 47 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.05 0.55 8.04 -51.93 -0.42 0.14 16 49 H 0.10 1.40 5.86 -51.93 -0.30 1.09 16 50 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 402.60 15.07 6.07 6.07 Total: -1.00 -34.52 402.60 -10.97 -45.50 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -7.97 Total: 4.86 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -3.35 Total: -4.15 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.39 Total: -54.16 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.31 Total: -15.77 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.52 -10.97 -45.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053694114.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.088 kcal (2) G-P(sol) polarization free energy of solvation -34.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds