Wall clock time and date at job start Wed Apr 1 2020 03:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38382 * 119.85601 * 2 1 4 4 C 1.37940 * 120.14545 * 179.97438 * 3 2 1 5 5 C 1.39597 * 119.84979 * 0.02562 * 4 3 2 6 6 C 1.47847 * 120.13853 * 179.97438 * 5 4 3 7 7 O 1.21556 * 119.99652 * 173.74953 * 6 5 4 8 8 N 1.34777 * 120.00156 * 353.76152 * 6 5 4 9 9 C 1.46501 * 119.99852 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.46802 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.82477 * 59.44673 * 10 9 8 12 12 C 1.54477 * 109.90557 * 180.37730 * 10 9 8 13 13 C 1.55510 * 102.38396 * 140.92447 * 12 10 9 14 14 C 1.53889 * 100.76007 * 327.02733 * 13 12 10 15 15 C 1.52374 * 115.67848 * 263.23582 * 14 13 12 16 16 N 1.47273 * 87.70039 * 218.74435 * 15 14 13 17 17 C 1.36942 * 135.93807 * 205.92314 * 16 15 14 18 18 H 1.07998 * 119.99621 * 359.97438 * 17 16 15 19 19 C 1.38807 * 120.00227 * 180.02562 * 17 16 15 20 20 N 1.31623 * 120.00074 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00080 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47121 * 59.99730 * 21 19 17 23 23 H 1.48500 * 109.47205 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47265 * 299.99641 * 21 19 17 25 25 C 1.47272 * 88.12977 * 26.18039 * 16 15 14 26 26 O 1.42404 * 106.66727 * 34.97823 * 14 13 12 27 27 C 1.39550 * 119.71250 * 0.25193 * 5 4 3 28 28 C 1.50706 * 120.07067 * 179.75042 * 27 5 4 29 29 C 1.37974 * 119.85536 * 359.48803 * 27 5 4 30 30 H 1.09002 * 109.46852 * 90.00178 * 1 2 3 31 31 H 1.09002 * 109.47279 * 209.99931 * 1 2 3 32 32 H 1.09001 * 109.46819 * 330.00807 * 1 2 3 33 33 H 1.08000 * 119.92501 * 359.97438 * 3 2 1 34 34 H 1.07992 * 120.06913 * 180.02562 * 4 3 2 35 35 H 0.96995 * 119.99888 * 359.97438 * 8 6 5 36 36 H 1.09006 * 109.46613 * 60.00113 * 9 8 6 37 37 H 1.08996 * 109.47578 * 299.99850 * 9 8 6 38 38 H 1.08997 * 110.82595 * 259.14925 * 12 10 9 39 39 H 1.09001 * 110.82220 * 22.50647 * 12 10 9 40 40 H 1.09002 * 111.15914 * 209.15528 * 13 12 10 41 41 H 1.08999 * 111.16194 * 84.90967 * 13 12 10 42 42 H 1.09000 * 113.51163 * 104.03902 * 15 14 13 43 43 H 1.08998 * 113.51574 * 333.45261 * 15 14 13 44 44 H 0.97002 * 120.00031 * 179.97438 * 20 19 17 45 45 H 1.09000 * 113.51391 * 88.52745 * 25 16 15 46 46 H 1.08998 * 113.51796 * 219.11336 * 25 16 15 47 47 H 1.08993 * 109.47476 * 83.40321 * 28 27 5 48 48 H 1.08999 * 109.46996 * 203.41150 * 28 27 5 49 49 H 1.09003 * 109.46773 * 323.40475 * 28 27 5 50 50 H 1.08001 * 119.93262 * 180.25135 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2002 0.0000 4 6 3.5753 1.2071 0.0005 5 6 4.2762 -0.0001 0.0005 6 6 5.7547 -0.0001 0.0005 7 8 6.3624 -1.0466 0.1151 8 7 6.4286 1.1602 -0.1263 9 6 7.8936 1.1602 -0.1257 10 6 8.4036 2.5941 -0.2833 11 1 8.0350 3.2097 0.5372 12 6 9.9483 2.6048 -0.2934 13 6 10.2673 3.6768 -1.3739 14 6 9.0851 3.4738 -2.3379 15 6 9.3619 2.5850 -3.5442 16 7 8.5392 3.5112 -4.3407 17 6 7.7872 3.4264 -5.4820 18 1 7.7116 2.4875 -6.0103 19 6 7.1230 4.5475 -5.9604 20 7 7.2156 5.6919 -5.3168 21 14 6.0978 4.4320 -7.5176 22 1 5.0187 3.4299 -7.3266 23 1 5.4957 5.7569 -7.8133 24 1 6.9635 4.0173 -8.6506 25 6 8.8841 4.5700 -3.3769 26 8 7.9580 3.1347 -1.5363 27 6 3.5754 -1.2068 -0.0053 28 6 4.3239 -2.5148 -0.0111 29 6 2.1956 -1.1998 -0.0004 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8901 0.5137 33 1 1.6524 2.1334 -0.0004 34 1 4.1117 2.1444 0.0010 35 1 5.9436 1.9952 -0.2180 36 1 8.2572 0.5525 -0.9544 37 1 8.2566 0.7464 0.8150 38 1 10.3402 2.9053 0.6782 39 1 10.3406 1.6299 -0.5829 40 1 11.2170 3.4684 -1.8666 41 1 10.2594 4.6799 -0.9473 42 1 8.9323 1.5871 -3.4568 43 1 10.4105 2.5694 -3.8413 44 1 6.7518 6.4754 -5.6514 45 1 9.8003 5.1047 -3.6277 46 1 8.0536 5.2381 -3.1491 47 1 4.6064 -2.7763 1.0086 48 1 3.6860 -3.2967 -0.4233 49 1 5.2208 -2.4175 -0.6229 50 1 1.6520 -2.1330 -0.0008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053694114.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:33 Heat of formation + Delta-G solvation = -19.316733 kcal Electronic energy + Delta-G solvation = -30299.925598 eV Core-core repulsion = 26292.978571 eV Total energy + Delta-G solvation = -4006.947027 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.64035 -41.22581 -39.52863 -38.12421 -35.83438 -34.30795 -34.18684 -33.30540 -32.90420 -30.80437 -29.04849 -28.22058 -27.79986 -26.54403 -25.41572 -23.70423 -23.27826 -22.49824 -22.15517 -21.10799 -20.48698 -18.84599 -18.72226 -17.74996 -17.30123 -16.93919 -16.44748 -16.21989 -16.04190 -16.00602 -15.95836 -15.53877 -15.28181 -14.84643 -14.62202 -14.57460 -14.16607 -14.12980 -14.10373 -13.90997 -13.56202 -13.36385 -13.16748 -13.09967 -12.81395 -12.80774 -12.69406 -12.64792 -12.55086 -12.53155 -12.29595 -12.14852 -11.96326 -11.64099 -11.33603 -11.25091 -10.94989 -10.70000 -10.26504 -10.17754 -9.81792 -9.57198 -8.93602 -7.92039 -5.24529 -0.16884 0.36293 1.41415 1.45529 1.51571 1.80239 2.12728 2.45055 2.78481 2.79962 3.29684 3.43238 3.53202 3.68073 3.71024 3.78568 3.86292 3.87407 3.94678 3.96971 4.21273 4.33541 4.35822 4.44688 4.54279 4.58869 4.62527 4.70226 4.70977 4.78379 4.79489 4.82325 4.85054 4.90345 4.96091 4.99159 5.01155 5.11740 5.15079 5.20186 5.24133 5.28394 5.29811 5.33201 5.43600 5.49960 5.56276 5.56666 5.91406 5.94653 6.37267 6.46624 6.89250 7.14342 7.57682 8.58712 9.25390 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008442 B = 0.003357 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3316.047755 B = 8338.968314 C =10583.899481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.057 4.057 3 C -0.143 4.143 4 C -0.082 4.082 5 C -0.171 4.171 6 C 0.551 3.449 7 O -0.568 6.568 8 N -0.713 5.713 9 C 0.117 3.883 10 C 0.060 3.940 11 H 0.104 0.896 12 C -0.131 4.131 13 C -0.128 4.128 14 C 0.080 3.920 15 C 0.103 3.897 16 N -0.638 5.638 17 C -0.233 4.233 18 H 0.076 0.924 19 C -0.063 4.063 20 N -0.950 5.950 21 Si 0.978 3.022 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.276 1.276 25 C 0.159 3.841 26 O -0.363 6.363 27 C -0.037 4.037 28 C -0.114 4.114 29 C -0.139 4.139 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.149 0.851 34 H 0.134 0.866 35 H 0.408 0.592 36 H 0.049 0.951 37 H 0.094 0.906 38 H 0.117 0.883 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.033 0.967 43 H 0.062 0.938 44 H 0.249 0.751 45 H 0.039 0.961 46 H 0.037 0.963 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.068 0.932 50 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.773 -9.672 17.964 21.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.057 4.057 3 C -0.161 4.161 4 C -0.101 4.101 5 C -0.174 4.174 6 C 0.341 3.659 7 O -0.450 6.450 8 N -0.364 5.364 9 C -0.006 4.006 10 C 0.002 3.998 11 H 0.122 0.878 12 C -0.169 4.169 13 C -0.166 4.166 14 C 0.039 3.961 15 C -0.022 4.022 16 N -0.364 5.364 17 C -0.362 4.362 18 H 0.094 0.906 19 C -0.256 4.256 20 N -0.598 5.598 21 Si 0.805 3.195 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.201 1.201 25 C 0.034 3.966 26 O -0.282 6.282 27 C -0.038 4.038 28 C -0.170 4.170 29 C -0.157 4.157 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.166 0.834 34 H 0.152 0.848 35 H 0.244 0.756 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.136 0.864 39 H 0.104 0.896 40 H 0.118 0.882 41 H 0.110 0.890 42 H 0.052 0.948 43 H 0.080 0.920 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.091 0.909 48 H 0.096 0.904 49 H 0.086 0.914 50 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.742 -10.262 17.713 21.261 hybrid contribution -0.386 0.629 -1.367 1.554 sum -6.128 -9.634 16.346 19.939 Atomic orbital electron populations 1.20931 0.88507 1.04350 1.03487 1.20535 0.98038 0.92561 0.94548 1.21301 0.93439 0.99213 1.02123 1.21500 0.95473 0.96803 0.96290 1.19836 0.92061 0.95195 1.10309 1.18591 0.87963 0.83442 0.75920 1.90672 1.70817 1.31628 1.51877 1.45852 1.07849 1.09467 1.73254 1.21828 0.79428 0.97151 1.02227 1.23341 0.96444 0.92707 0.87270 0.87803 1.23084 0.92163 1.00296 1.01382 1.22960 0.97473 1.00739 0.95445 1.22946 0.86522 0.96042 0.90602 1.22960 0.94950 0.94364 0.89937 1.45836 1.53717 1.08955 1.27870 1.19218 1.21195 0.95899 0.99844 0.90596 1.25582 1.02271 0.95199 1.02537 1.70004 1.47690 1.00430 1.41714 0.85173 0.78523 0.76550 0.79215 1.20681 1.21389 1.20148 1.22065 0.97158 0.92063 0.85353 1.88349 1.30341 1.81812 1.27741 1.20244 0.94457 0.94663 0.94454 1.20971 1.00146 0.92847 1.03009 1.21203 0.92386 0.99260 1.02802 0.90058 0.89869 0.90043 0.83364 0.84785 0.75568 0.93258 0.88752 0.86437 0.89575 0.88231 0.89005 0.94847 0.92002 0.94196 0.94296 0.94460 0.90884 0.90408 0.91353 0.83153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 10.01 71.24 0.71 -0.63 16 2 C -0.06 -1.05 5.89 -19.80 -0.12 -1.16 16 3 C -0.14 -2.91 9.68 22.23 0.22 -2.70 16 4 C -0.08 -1.99 9.53 22.53 0.21 -1.77 16 5 C -0.17 -4.82 5.87 -20.09 -0.12 -4.94 16 6 C 0.55 17.42 7.70 86.79 0.67 18.09 16 7 O -0.57 -20.36 13.35 -3.89 -0.05 -20.41 16 8 N -0.71 -20.43 5.42 -465.96 -2.52 -22.96 16 9 C 0.12 3.10 5.24 86.38 0.45 3.55 16 10 C 0.06 1.50 3.61 31.10 0.11 1.61 16 11 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 12 C -0.13 -2.53 6.56 31.96 0.21 -2.32 16 13 C -0.13 -3.16 6.49 31.76 0.21 -2.95 16 14 C 0.08 2.99 1.55 -10.91 -0.02 2.97 16 15 C 0.10 4.41 8.25 83.47 0.69 5.10 16 16 N -0.64 -34.82 3.79 -740.68 -2.81 -37.63 16 17 C -0.23 -13.98 10.74 84.03 0.90 -13.07 16 18 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 19 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 20 N -0.95 -59.03 11.52 21.65 0.25 -58.78 16 21 Si 0.98 47.52 29.55 68.60 2.03 49.55 16 22 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 23 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 25 C 0.16 7.77 6.94 83.47 0.58 8.35 16 26 O -0.36 -13.54 10.68 -148.98 -1.59 -15.13 16 27 C -0.04 -0.95 5.91 -19.61 -0.12 -1.07 16 28 C -0.11 -2.80 8.73 71.24 0.62 -2.18 16 29 C -0.14 -2.81 9.31 22.23 0.21 -2.60 16 30 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.08 0.73 8.08 -2.39 -0.02 0.71 16 32 H 0.08 0.77 8.08 -2.39 -0.02 0.75 16 33 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 34 H 0.13 2.92 6.46 -2.91 -0.02 2.90 16 35 H 0.41 11.00 6.47 -92.71 -0.60 10.40 16 36 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.09 1.58 7.85 -2.39 -0.02 1.56 16 40 H 0.10 2.17 7.93 -2.39 -0.02 2.15 16 41 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.06 2.37 7.98 -2.39 -0.02 2.35 16 44 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 45 H 0.04 1.86 8.13 -2.39 -0.02 1.84 16 46 H 0.04 2.09 7.17 -2.39 -0.02 2.07 16 47 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.08 1.49 8.04 -2.39 -0.02 1.47 16 49 H 0.07 2.09 5.86 -2.39 -0.01 2.07 16 50 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -79.06 402.60 1.53 -77.53 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 0.34 Total: 26.83 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 5.89 Total: 1.00 kcal Atomic # 7 Polarization: -114.29 SS G_CDS: -5.08 Total: -119.37 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -1.64 Total: -35.54 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -79.06 1.53 -77.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053694114.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.210 kcal (2) G-P(sol) polarization free energy of solvation -79.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds