Wall clock time and date at job start Wed Apr 1 2020 03:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38381 * 119.92695 * 2 1 4 4 C 1.38337 * 120.29165 * 180.02562 * 3 2 1 5 5 C 1.37983 * 120.14430 * 359.97438 * 4 3 2 6 6 C 1.39558 * 119.85120 * 0.02562 * 5 4 3 7 7 C 1.47852 * 120.13884 * 179.97438 * 6 5 4 8 8 O 1.21553 * 119.99253 * 173.72035 * 7 6 5 9 9 N 1.34776 * 120.00275 * 353.72496 * 7 6 5 10 10 C 1.46495 * 119.99795 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47334 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.36475 * 57.81259 * 11 10 9 13 13 C 1.54548 * 110.32857 * 179.97438 * 11 10 9 14 14 C 1.54760 * 104.07774 * 142.48923 * 13 11 10 15 15 C 1.53344 * 103.67633 * 359.14176 * 14 13 11 16 16 C 1.52311 * 116.12996 * 108.91012 * 15 14 13 17 17 N 1.47285 * 87.68824 * 91.18635 * 16 15 14 18 18 C 1.36929 * 135.92699 * 206.13090 * 17 16 15 19 19 H 1.08002 * 120.00244 * 353.50923 * 18 17 16 20 20 C 1.38813 * 120.00203 * 173.50984 * 18 17 16 21 21 N 1.31618 * 120.00250 * 176.04174 * 20 18 17 22 22 Si 1.86803 * 119.99610 * 356.04176 * 20 18 17 23 23 H 1.48501 * 109.46897 * 173.95705 * 22 20 18 24 24 H 1.48491 * 109.47209 * 53.95742 * 22 20 18 25 25 H 1.48493 * 109.47114 * 293.95149 * 22 20 18 26 26 C 1.47287 * 88.14282 * 26.38089 * 17 16 15 27 27 O 1.43101 * 106.44720 * 337.44839 * 15 14 13 28 28 C 1.37943 * 119.92530 * 180.25461 * 2 1 3 29 29 C 1.50694 * 120.07655 * 0.02562 * 28 2 1 30 30 H 1.09001 * 109.47007 * 89.99899 * 1 2 3 31 31 H 1.08999 * 109.46863 * 210.00126 * 1 2 3 32 32 H 1.09001 * 109.47113 * 330.00054 * 1 2 3 33 33 H 1.07999 * 119.85419 * 359.97438 * 3 2 1 34 34 H 1.07996 * 119.92683 * 180.02562 * 4 3 2 35 35 H 1.07999 * 120.07248 * 180.02562 * 5 4 3 36 36 H 0.96995 * 119.99482 * 359.97438 * 9 7 6 37 37 H 1.09007 * 109.47245 * 59.99244 * 10 9 7 38 38 H 1.09003 * 109.46796 * 299.99431 * 10 9 7 39 39 H 1.08998 * 110.50626 * 23.84152 * 13 11 10 40 40 H 1.08998 * 110.51081 * 261.14356 * 13 11 10 41 41 H 1.08997 * 110.58929 * 240.59328 * 14 13 11 42 42 H 1.09005 * 110.71433 * 117.74650 * 14 13 11 43 43 H 1.08998 * 113.51475 * 336.47679 * 16 15 14 44 44 H 1.09003 * 113.57933 * 205.89468 * 16 15 14 45 45 H 0.97006 * 120.00176 * 5.08772 * 21 20 18 46 46 H 1.08996 * 113.51716 * 88.32425 * 26 17 16 47 47 H 1.09009 * 113.51416 * 218.91811 * 26 17 16 48 48 H 1.09004 * 109.47040 * 263.49965 * 29 28 2 49 49 H 1.09004 * 109.47251 * 23.49143 * 29 28 2 50 50 H 1.08997 * 109.47456 * 143.49055 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2081 -0.0005 5 6 4.2812 0.0193 -0.0005 6 6 3.5911 -1.1937 -0.0005 7 6 4.3353 -2.4712 -0.0011 8 8 3.7369 -3.5230 0.1140 9 7 5.6769 -2.4696 -0.1292 10 6 6.4141 -3.7355 -0.1303 11 6 7.9097 -3.4547 -0.2890 12 1 8.2605 -2.8036 0.5117 13 6 8.7072 -4.7785 -0.2921 14 6 9.8282 -4.5402 -1.3322 15 6 9.5555 -3.1192 -1.8400 16 6 10.5471 -2.0489 -1.4029 17 7 11.3099 -2.3394 -2.6289 18 6 12.6162 -2.2287 -3.0242 19 1 13.3363 -1.7461 -2.3801 20 6 13.0150 -2.7369 -4.2529 21 7 14.2520 -2.5622 -4.6672 22 14 11.7959 -3.6688 -5.3182 23 1 12.4196 -3.9771 -6.6302 24 1 10.5851 -2.8356 -5.5295 25 1 11.4141 -4.9345 -4.6421 26 6 10.0525 -2.7949 -3.2459 27 8 8.1741 -2.8534 -1.5780 28 6 2.1952 -1.1955 -0.0053 29 6 1.4417 -2.5006 -0.0117 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6538 2.1325 -0.0004 34 1 4.1135 2.1475 -0.0001 35 1 5.3612 0.0275 -0.0005 36 1 6.1542 -1.6302 -0.2214 37 1 6.0711 -4.3550 -0.9591 38 1 6.2401 -4.2581 0.8103 39 1 8.0701 -5.6074 -0.6004 40 1 9.1341 -4.9695 0.6925 41 1 9.7535 -5.2595 -2.1477 42 1 10.8096 -4.5971 -0.8612 43 1 11.0828 -2.3002 -0.4875 44 1 10.1237 -1.0447 -1.3819 45 1 14.9043 -2.1437 -4.0839 46 1 9.4921 -1.9962 -3.7318 47 1 10.1724 -3.6735 -3.8800 48 1 1.3605 -2.8782 1.0076 49 1 0.4440 -2.3421 -0.4210 50 1 1.9756 -3.2254 -0.6263 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053694884.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:42 Heat of formation + Delta-G solvation = 8.683183 kcal Electronic energy + Delta-G solvation = -29917.988565 eV Core-core repulsion = 25912.255705 eV Total energy + Delta-G solvation = -4005.732859 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.74697 -40.26405 -38.75549 -37.00706 -34.95972 -33.60572 -32.48945 -32.34037 -32.01717 -29.71782 -28.02161 -26.99623 -26.73020 -25.67754 -24.38281 -23.03361 -21.55938 -21.46225 -21.04786 -20.28769 -19.17190 -17.80020 -17.49405 -16.74090 -16.35175 -16.08131 -15.79278 -15.40094 -15.37063 -15.09033 -14.91865 -14.44002 -14.24318 -13.76917 -13.54619 -13.35514 -13.31476 -13.13278 -13.00165 -12.87012 -12.74002 -12.40633 -12.25752 -12.05239 -11.98689 -11.93693 -11.55155 -11.46885 -11.25781 -11.20014 -11.18757 -10.68243 -10.53437 -10.39143 -9.78457 -9.67597 -9.36287 -9.18751 -9.06523 -9.04695 -8.87706 -8.84987 -7.24282 -6.35784 -3.30230 0.58027 1.01826 2.65075 2.94703 3.39025 3.42097 3.53548 3.62864 3.82650 4.39197 4.42794 4.52608 4.54204 4.55113 4.62463 4.68039 4.77950 4.87776 4.88999 4.93112 4.96728 5.13672 5.22097 5.25386 5.32647 5.35629 5.38096 5.45325 5.46369 5.56587 5.58285 5.63502 5.71780 5.76421 5.88733 5.95526 6.02695 6.10416 6.11456 6.14084 6.18060 6.21522 6.24932 6.29827 6.32214 6.35748 6.50681 6.59843 6.98730 7.21186 7.32405 8.03376 8.17584 8.91449 9.43428 10.27484 11.15732 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018051 B = 0.002256 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.767513 B =12408.866251 C =13022.562220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.101 4.101 3 C -0.092 4.092 4 C -0.131 4.131 5 C -0.085 4.085 6 C -0.136 4.136 7 C 0.558 3.442 8 O -0.536 6.536 9 N -0.719 5.719 10 C 0.129 3.871 11 C 0.061 3.939 12 H 0.075 0.925 13 C -0.145 4.145 14 C -0.115 4.115 15 C 0.059 3.941 16 C 0.111 3.889 17 N -0.619 5.619 18 C -0.302 4.302 19 H 0.083 0.917 20 C -0.022 4.022 21 N -0.932 5.932 22 Si 1.070 2.930 23 H -0.295 1.295 24 H -0.286 1.286 25 H -0.292 1.292 26 C 0.118 3.882 27 O -0.354 6.354 28 C -0.024 4.024 29 C -0.123 4.123 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.404 0.596 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.048 0.952 44 H 0.045 0.955 45 H 0.261 0.739 46 H 0.052 0.948 47 H 0.053 0.947 48 H 0.074 0.926 49 H 0.059 0.941 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.028 3.082 13.371 29.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.101 4.101 3 C -0.110 4.110 4 C -0.149 4.149 5 C -0.104 4.104 6 C -0.139 4.139 7 C 0.346 3.654 8 O -0.415 6.415 9 N -0.370 5.370 10 C 0.005 3.995 11 C 0.003 3.997 12 H 0.093 0.907 13 C -0.183 4.183 14 C -0.153 4.153 15 C 0.018 3.982 16 C -0.016 4.016 17 N -0.349 5.349 18 C -0.428 4.428 19 H 0.101 0.899 20 C -0.221 4.221 21 N -0.574 5.574 22 Si 0.903 3.097 23 H -0.222 1.222 24 H -0.214 1.214 25 H -0.220 1.220 26 C -0.007 4.007 27 O -0.272 6.272 28 C -0.025 4.025 29 C -0.179 4.179 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.240 0.760 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.093 0.907 49 H 0.078 0.922 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -26.498 1.707 11.768 29.044 hybrid contribution 0.788 1.401 1.562 2.242 sum -25.710 3.108 13.331 29.127 Atomic orbital electron populations 1.20831 0.90791 1.03009 1.02549 1.19782 0.96381 0.92320 1.01614 1.21235 0.94327 0.97569 0.97896 1.21075 0.94246 0.98093 1.01452 1.21326 0.99894 0.91791 0.97405 1.19772 0.93727 0.92990 1.07412 1.18245 0.81888 0.88822 0.76466 1.90718 1.67793 1.33047 1.49921 1.45855 1.06669 1.10396 1.74120 1.21507 0.89108 0.86026 1.02820 1.23224 0.93780 0.94681 0.88009 0.90721 1.22942 0.97566 0.97275 1.00500 1.22343 0.99101 0.95364 0.98511 1.23639 0.80464 0.94878 0.99220 1.22681 0.90900 0.96069 0.91940 1.45791 1.02142 1.76495 1.10521 1.20103 0.80930 1.36507 1.05283 0.89920 1.25729 1.00407 0.99774 0.96229 1.70932 1.02862 1.46297 1.37347 0.83711 0.73959 0.76131 0.75896 1.22211 1.21360 1.22021 1.22672 0.87341 0.98103 0.92574 1.88950 1.26574 1.77024 1.34679 1.19888 0.91995 0.95737 0.94832 1.21117 0.98962 0.94222 1.03583 0.91011 0.91003 0.91459 0.85647 0.85322 0.85500 0.75971 0.90403 0.90064 0.90365 0.90243 0.90382 0.89553 0.93390 0.93775 0.92882 0.92992 0.92963 0.90738 0.92186 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 9.18 36.01 0.33 -0.37 16 2 C -0.10 -0.87 5.87 -104.68 -0.61 -1.48 16 3 C -0.09 -0.71 9.69 -39.49 -0.38 -1.10 16 4 C -0.13 -1.05 10.03 -39.64 -0.40 -1.45 16 5 C -0.09 -0.78 9.53 -39.18 -0.37 -1.16 16 6 C -0.14 -1.50 5.87 -104.97 -0.62 -2.11 16 7 C 0.56 6.91 7.70 -12.33 -0.09 6.82 16 8 O -0.54 -7.84 13.36 5.32 0.07 -7.77 16 9 N -0.72 -7.93 5.46 -61.25 -0.33 -8.26 16 10 C 0.13 1.42 5.28 -4.04 -0.02 1.40 16 11 C 0.06 0.72 3.35 -25.92 -0.09 0.63 16 12 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 13 C -0.14 -1.65 6.65 -24.99 -0.17 -1.82 16 14 C -0.12 -1.78 6.50 -25.63 -0.17 -1.95 16 15 C 0.06 1.04 1.39 -91.01 -0.13 0.91 16 16 C 0.11 2.17 8.18 -7.84 -0.06 2.10 16 17 N -0.62 -15.13 3.66 -184.85 -0.68 -15.81 16 18 C -0.30 -8.62 11.09 -15.06 -0.17 -8.79 16 19 H 0.08 2.48 8.05 -52.49 -0.42 2.05 16 20 C -0.02 -0.66 5.50 -17.43 -0.10 -0.76 16 21 N -0.93 -29.24 13.70 55.49 0.76 -28.48 16 22 Si 1.07 26.82 25.01 -169.99 -4.25 22.57 16 23 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 24 H -0.29 -6.74 6.16 56.52 0.35 -6.40 16 25 H -0.29 -6.88 6.92 56.52 0.39 -6.49 16 26 C 0.12 2.57 5.51 -7.69 -0.04 2.53 16 27 O -0.35 -5.50 11.12 -35.23 -0.39 -5.89 16 28 C -0.02 -0.24 5.91 -104.23 -0.62 -0.86 16 29 C -0.12 -1.22 8.08 36.00 0.29 -0.93 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.41 6.58 -51.93 -0.34 0.07 16 32 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 33 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.13 0.95 6.46 -52.49 -0.34 0.62 16 36 H 0.40 3.94 6.55 -40.82 -0.27 3.67 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.81 7.87 -51.93 -0.41 0.40 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 1.23 8.11 -51.93 -0.42 0.81 16 42 H 0.09 1.39 7.92 -51.93 -0.41 0.98 16 43 H 0.05 0.88 8.07 -51.93 -0.42 0.47 16 44 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.26 8.07 8.73 -40.82 -0.36 7.71 16 46 H 0.05 1.13 8.11 -51.93 -0.42 0.71 16 47 H 0.05 1.17 3.98 -51.92 -0.21 0.96 16 48 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.06 0.47 6.34 -51.93 -0.33 0.14 16 50 H 0.10 1.14 5.88 -51.93 -0.31 0.84 16 LS Contribution 391.64 15.07 5.90 5.90 Total: -1.00 -33.81 391.64 -10.07 -43.88 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -7.73 Total: 2.24 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -3.41 Total: -8.37 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.25 Total: -52.55 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.32 Total: -13.66 kcal Atomic # 14 Polarization: 26.82 SS G_CDS: -4.25 Total: 22.57 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.81 -10.07 -43.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053694884.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.560 kcal (2) G-P(sol) polarization free energy of solvation -33.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds