Wall clock time and date at job start Wed Apr 1 2020 03:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38381 * 119.92695 * 2 1 4 4 C 1.38337 * 120.29165 * 180.02562 * 3 2 1 5 5 C 1.37983 * 120.14430 * 359.97438 * 4 3 2 6 6 C 1.39558 * 119.85120 * 0.02562 * 5 4 3 7 7 C 1.47852 * 120.13884 * 179.97438 * 6 5 4 8 8 O 1.21553 * 119.99253 * 173.72035 * 7 6 5 9 9 N 1.34776 * 120.00275 * 353.72496 * 7 6 5 10 10 C 1.46495 * 119.99795 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47334 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.36475 * 57.81259 * 11 10 9 13 13 C 1.54548 * 110.32857 * 179.97438 * 11 10 9 14 14 C 1.54760 * 104.07774 * 142.48923 * 13 11 10 15 15 C 1.53344 * 103.67633 * 359.14176 * 14 13 11 16 16 C 1.52311 * 116.12996 * 108.91012 * 15 14 13 17 17 N 1.47285 * 87.68824 * 91.18635 * 16 15 14 18 18 C 1.36929 * 135.92699 * 206.13090 * 17 16 15 19 19 H 1.08002 * 120.00244 * 353.50923 * 18 17 16 20 20 C 1.38813 * 120.00203 * 173.50984 * 18 17 16 21 21 N 1.31618 * 120.00250 * 176.04174 * 20 18 17 22 22 Si 1.86803 * 119.99610 * 356.04176 * 20 18 17 23 23 H 1.48501 * 109.46897 * 173.95705 * 22 20 18 24 24 H 1.48491 * 109.47209 * 53.95742 * 22 20 18 25 25 H 1.48493 * 109.47114 * 293.95149 * 22 20 18 26 26 C 1.47287 * 88.14282 * 26.38089 * 17 16 15 27 27 O 1.43101 * 106.44720 * 337.44839 * 15 14 13 28 28 C 1.37943 * 119.92530 * 180.25461 * 2 1 3 29 29 C 1.50694 * 120.07655 * 0.02562 * 28 2 1 30 30 H 1.09001 * 109.47007 * 89.99899 * 1 2 3 31 31 H 1.08999 * 109.46863 * 210.00126 * 1 2 3 32 32 H 1.09001 * 109.47113 * 330.00054 * 1 2 3 33 33 H 1.07999 * 119.85419 * 359.97438 * 3 2 1 34 34 H 1.07996 * 119.92683 * 180.02562 * 4 3 2 35 35 H 1.07999 * 120.07248 * 180.02562 * 5 4 3 36 36 H 0.96995 * 119.99482 * 359.97438 * 9 7 6 37 37 H 1.09007 * 109.47245 * 59.99244 * 10 9 7 38 38 H 1.09003 * 109.46796 * 299.99431 * 10 9 7 39 39 H 1.08998 * 110.50626 * 23.84152 * 13 11 10 40 40 H 1.08998 * 110.51081 * 261.14356 * 13 11 10 41 41 H 1.08997 * 110.58929 * 240.59328 * 14 13 11 42 42 H 1.09005 * 110.71433 * 117.74650 * 14 13 11 43 43 H 1.08998 * 113.51475 * 336.47679 * 16 15 14 44 44 H 1.09003 * 113.57933 * 205.89468 * 16 15 14 45 45 H 0.97006 * 120.00176 * 5.08772 * 21 20 18 46 46 H 1.08996 * 113.51716 * 88.32425 * 26 17 16 47 47 H 1.09009 * 113.51416 * 218.91811 * 26 17 16 48 48 H 1.09004 * 109.47040 * 263.49965 * 29 28 2 49 49 H 1.09004 * 109.47251 * 23.49143 * 29 28 2 50 50 H 1.08997 * 109.47456 * 143.49055 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2081 -0.0005 5 6 4.2812 0.0193 -0.0005 6 6 3.5911 -1.1937 -0.0005 7 6 4.3353 -2.4712 -0.0011 8 8 3.7369 -3.5230 0.1140 9 7 5.6769 -2.4696 -0.1292 10 6 6.4141 -3.7355 -0.1303 11 6 7.9097 -3.4547 -0.2890 12 1 8.2605 -2.8036 0.5117 13 6 8.7072 -4.7785 -0.2921 14 6 9.8282 -4.5402 -1.3322 15 6 9.5555 -3.1192 -1.8400 16 6 10.5471 -2.0489 -1.4029 17 7 11.3099 -2.3394 -2.6289 18 6 12.6162 -2.2287 -3.0242 19 1 13.3363 -1.7461 -2.3801 20 6 13.0150 -2.7369 -4.2529 21 7 14.2520 -2.5622 -4.6672 22 14 11.7959 -3.6688 -5.3182 23 1 12.4196 -3.9771 -6.6302 24 1 10.5851 -2.8356 -5.5295 25 1 11.4141 -4.9345 -4.6421 26 6 10.0525 -2.7949 -3.2459 27 8 8.1741 -2.8534 -1.5780 28 6 2.1952 -1.1955 -0.0053 29 6 1.4417 -2.5006 -0.0117 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6538 2.1325 -0.0004 34 1 4.1135 2.1475 -0.0001 35 1 5.3612 0.0275 -0.0005 36 1 6.1542 -1.6302 -0.2214 37 1 6.0711 -4.3550 -0.9591 38 1 6.2401 -4.2581 0.8103 39 1 8.0701 -5.6074 -0.6004 40 1 9.1341 -4.9695 0.6925 41 1 9.7535 -5.2595 -2.1477 42 1 10.8096 -4.5971 -0.8612 43 1 11.0828 -2.3002 -0.4875 44 1 10.1237 -1.0447 -1.3819 45 1 14.9043 -2.1437 -4.0839 46 1 9.4921 -1.9962 -3.7318 47 1 10.1724 -3.6735 -3.8800 48 1 1.3605 -2.8782 1.0076 49 1 0.4440 -2.3421 -0.4210 50 1 1.9756 -3.2254 -0.6263 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053694884.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:41 Heat of formation + Delta-G solvation = -13.660625 kcal Electronic energy + Delta-G solvation = -29918.957465 eV Core-core repulsion = 25912.255705 eV Total energy + Delta-G solvation = -4006.701760 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.79205 -41.36192 -39.57359 -38.40502 -35.95384 -34.56891 -34.21267 -33.25983 -33.01362 -30.95609 -29.19688 -28.20941 -27.36400 -27.30722 -25.44864 -23.99661 -23.23982 -22.39864 -21.77073 -21.14386 -20.75459 -19.54596 -18.58298 -17.72298 -17.50335 -17.24769 -16.70180 -16.53445 -16.38756 -16.20630 -16.03342 -15.66148 -15.17422 -15.12078 -14.94011 -14.58743 -14.35578 -14.13930 -13.89871 -13.74678 -13.51954 -13.41411 -13.28853 -13.16051 -12.97937 -12.85504 -12.72006 -12.67376 -12.55395 -12.49078 -12.24426 -12.08481 -11.80517 -11.62014 -11.34423 -11.20485 -11.09323 -10.68453 -10.46164 -10.22651 -9.75592 -9.53181 -9.29041 -8.66980 -5.53258 -0.12954 0.37163 1.36603 1.45279 1.65043 1.83643 2.09551 2.49470 2.58087 2.82530 2.94792 3.19706 3.38105 3.56129 3.64587 3.70853 3.81238 3.90327 3.94370 4.08407 4.09801 4.26744 4.34598 4.38149 4.38846 4.44479 4.51305 4.59593 4.64104 4.68401 4.72523 4.78354 4.80578 4.82563 4.84759 4.89847 4.92980 4.96966 4.98612 5.07806 5.10625 5.19294 5.21974 5.27117 5.36342 5.44032 5.49629 5.64950 5.89817 5.94182 5.97954 6.47050 6.64508 7.15113 7.26670 8.18876 8.87057 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018051 B = 0.002256 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.767513 B =12408.866251 C =13022.562220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.107 4.107 3 C -0.092 4.092 4 C -0.134 4.134 5 C -0.092 4.092 6 C -0.159 4.159 7 C 0.553 3.447 8 O -0.566 6.566 9 N -0.714 5.714 10 C 0.133 3.867 11 C 0.062 3.938 12 H 0.094 0.906 13 C -0.134 4.134 14 C -0.120 4.120 15 C 0.082 3.918 16 C 0.110 3.890 17 N -0.648 5.648 18 C -0.286 4.286 19 H 0.055 0.945 20 C -0.080 4.080 21 N -0.968 5.968 22 Si 1.105 2.895 23 H -0.304 1.304 24 H -0.266 1.266 25 H -0.269 1.269 26 C 0.105 3.895 27 O -0.362 6.362 28 C -0.045 4.045 29 C -0.116 4.116 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.139 0.861 36 H 0.411 0.589 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.248 0.752 46 H 0.052 0.948 47 H 0.049 0.951 48 H 0.068 0.932 49 H 0.078 0.922 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.845 3.568 14.763 32.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.107 4.107 3 C -0.110 4.110 4 C -0.151 4.151 5 C -0.111 4.111 6 C -0.162 4.162 7 C 0.343 3.657 8 O -0.447 6.447 9 N -0.366 5.366 10 C 0.010 3.990 11 C 0.005 3.995 12 H 0.111 0.889 13 C -0.172 4.172 14 C -0.158 4.158 15 C 0.041 3.959 16 C -0.015 4.015 17 N -0.378 5.378 18 C -0.414 4.414 19 H 0.073 0.927 20 C -0.272 4.272 21 N -0.614 5.614 22 Si 0.932 3.068 23 H -0.232 1.232 24 H -0.192 1.192 25 H -0.196 1.196 26 C -0.020 4.020 27 O -0.280 6.280 28 C -0.046 4.046 29 C -0.172 4.172 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.170 0.830 34 H 0.170 0.830 35 H 0.157 0.843 36 H 0.248 0.752 37 H 0.083 0.917 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.123 0.877 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.057 0.943 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.087 0.913 49 H 0.097 0.903 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -29.348 2.213 13.212 32.261 hybrid contribution 1.597 1.377 1.239 2.445 sum -27.752 3.590 14.451 31.494 Atomic orbital electron populations 1.20887 0.89075 1.03934 1.03250 1.20101 0.97756 0.91961 1.00869 1.21619 0.94510 0.98350 0.96475 1.21423 0.94677 0.98567 1.00459 1.21525 1.00660 0.91612 0.97297 1.19833 0.94160 0.92958 1.09232 1.18549 0.82186 0.89075 0.75911 1.90701 1.68402 1.34156 1.51461 1.45836 1.06398 1.10761 1.73606 1.21478 0.88462 0.85976 1.03105 1.23432 0.94266 0.95149 0.86658 0.88863 1.22937 0.96220 0.97387 1.00614 1.22377 1.00248 0.93664 0.99515 1.23132 0.81352 0.95462 0.95906 1.22856 0.90788 0.97256 0.90620 1.45818 1.01719 1.77032 1.13256 1.19960 0.82761 1.34259 1.04391 0.92734 1.26951 1.01134 1.01011 0.98153 1.71025 1.03852 1.48690 1.37788 0.83306 0.72882 0.76384 0.74211 1.23218 1.19168 1.19594 1.22839 0.86264 0.97797 0.95059 1.88938 1.24761 1.77522 1.36817 1.20085 0.92129 0.96504 0.95921 1.21008 0.99623 0.93762 1.02826 0.90312 0.90921 0.89759 0.82970 0.83036 0.84285 0.75213 0.91666 0.88544 0.88921 0.87652 0.90801 0.90360 0.92202 0.92845 0.94284 0.93075 0.93311 0.91322 0.90343 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 9.18 71.24 0.65 -0.47 16 2 C -0.11 -1.64 5.87 -19.90 -0.12 -1.75 16 3 C -0.09 -1.17 9.69 22.33 0.22 -0.95 16 4 C -0.13 -1.80 10.03 22.23 0.22 -1.57 16 5 C -0.09 -1.54 9.53 22.53 0.21 -1.32 16 6 C -0.16 -3.38 5.87 -20.09 -0.12 -3.50 16 7 C 0.55 13.42 7.70 86.79 0.67 14.09 16 8 O -0.57 -16.64 13.36 -3.88 -0.05 -16.69 16 9 N -0.71 -14.59 5.46 -465.97 -2.55 -17.14 16 10 C 0.13 2.62 5.28 86.38 0.46 3.07 16 11 C 0.06 1.26 3.35 31.12 0.10 1.36 16 12 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 13 C -0.13 -2.55 6.65 31.72 0.21 -2.34 16 14 C -0.12 -3.39 6.50 31.31 0.20 -3.19 16 15 C 0.08 2.72 1.39 -11.04 -0.02 2.71 16 16 C 0.11 4.11 8.18 83.49 0.68 4.79 16 17 N -0.65 -31.24 3.66 -740.22 -2.71 -33.95 16 18 C -0.29 -16.60 11.09 84.04 0.93 -15.67 16 19 H 0.05 3.39 8.05 -2.91 -0.02 3.36 16 20 C -0.08 -4.81 5.50 84.86 0.47 -4.35 16 21 N -0.97 -62.60 13.70 21.65 0.30 -62.31 16 22 Si 1.11 54.17 25.01 68.60 1.72 55.88 16 23 H -0.30 -15.25 7.11 99.48 0.71 -14.54 16 24 H -0.27 -11.98 6.16 99.48 0.61 -11.37 16 25 H -0.27 -12.06 6.92 99.48 0.69 -11.37 16 26 C 0.11 4.40 5.51 83.58 0.46 4.86 16 27 O -0.36 -10.24 11.12 -148.98 -1.66 -11.90 16 28 C -0.05 -0.91 5.91 -19.61 -0.12 -1.03 16 29 C -0.12 -2.30 8.08 71.23 0.58 -1.72 16 30 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.69 6.58 -2.39 -0.02 0.68 16 32 H 0.08 0.53 8.08 -2.39 -0.02 0.52 16 33 H 0.15 1.07 8.06 -2.91 -0.02 1.04 16 34 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.14 1.82 6.46 -2.91 -0.02 1.80 16 36 H 0.41 7.17 6.55 -92.71 -0.61 6.56 16 37 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.10 1.65 8.14 -2.39 -0.02 1.64 16 39 H 0.09 1.55 7.87 -2.39 -0.02 1.54 16 40 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 2.15 8.11 -2.39 -0.02 2.14 16 42 H 0.08 2.34 7.92 -2.38 -0.02 2.32 16 43 H 0.06 2.08 8.07 -2.39 -0.02 2.06 16 44 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.25 16.02 8.73 -92.70 -0.81 15.22 16 46 H 0.05 2.15 8.11 -2.39 -0.02 2.13 16 47 H 0.05 2.08 3.98 -2.38 -0.01 2.07 16 48 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 49 H 0.08 1.17 6.34 -2.38 -0.02 1.16 16 50 H 0.07 1.76 5.88 -2.39 -0.01 1.75 16 Total: -1.00 -75.60 391.64 0.95 -74.65 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.20 Total: 18.43 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 5.70 Total: -6.98 kcal Atomic # 7 Polarization: -108.43 SS G_CDS: -4.96 Total: -113.39 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -1.71 Total: -28.59 kcal Atomic # 14 Polarization: 54.17 SS G_CDS: 1.72 Total: 55.88 kcal Total: -75.60 0.95 -74.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053694884.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.986 kcal (2) G-P(sol) polarization free energy of solvation -75.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds