Wall clock time and date at job start Wed Apr 1 2020 03:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38385 * 119.85222 * 2 1 4 4 C 1.37936 * 120.14751 * 180.02562 * 3 2 1 5 5 C 1.39594 * 119.85297 * 359.97438 * 4 3 2 6 6 C 1.47839 * 120.14738 * 179.97438 * 5 4 3 7 7 O 1.21555 * 120.00392 * 180.02562 * 6 5 4 8 8 N 1.34781 * 119.99792 * 359.97438 * 6 5 4 9 9 C 1.46507 * 119.99725 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.46647 * 179.97438 * 9 8 6 11 11 H 1.09002 * 110.36971 * 57.81596 * 10 9 8 12 12 C 1.54555 * 110.32138 * 179.97438 * 10 9 8 13 13 C 1.54774 * 104.07821 * 142.48979 * 12 10 9 14 14 C 1.53348 * 103.67263 * 359.14144 * 13 12 10 15 15 C 1.52303 * 116.13344 * 108.91148 * 14 13 12 16 16 N 1.47284 * 87.68708 * 91.18103 * 15 14 13 17 17 C 1.36942 * 135.92786 * 206.12790 * 16 15 14 18 18 H 1.08003 * 120.00136 * 6.79529 * 17 16 15 19 19 C 1.38804 * 119.99713 * 186.79235 * 17 16 15 20 20 N 1.31621 * 119.99893 * 172.37074 * 19 17 16 21 21 Si 1.86794 * 120.00271 * 352.37001 * 19 17 16 22 22 H 1.48509 * 109.47067 * 175.35403 * 21 19 17 23 23 H 1.48499 * 109.47130 * 55.35383 * 21 19 17 24 24 H 1.48497 * 109.47427 * 295.35226 * 21 19 17 25 25 C 1.47281 * 88.14217 * 26.38451 * 16 15 14 26 26 O 1.43112 * 106.44597 * 337.44794 * 14 13 12 27 27 C 1.39561 * 119.70939 * 0.25398 * 5 4 3 28 28 C 1.37973 * 119.85336 * 359.49062 * 27 5 4 29 29 C 1.50699 * 119.92977 * 180.25550 * 28 27 5 30 30 H 1.08996 * 109.46538 * 90.00920 * 1 2 3 31 31 H 1.08996 * 109.46664 * 210.00514 * 1 2 3 32 32 H 1.08994 * 109.47497 * 330.00323 * 1 2 3 33 33 H 1.08003 * 119.92708 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.07233 * 179.97438 * 4 3 2 35 35 H 0.96998 * 120.00139 * 359.97438 * 8 6 5 36 36 H 1.09000 * 109.47167 * 60.00159 * 9 8 6 37 37 H 1.08993 * 109.46813 * 299.99688 * 9 8 6 38 38 H 1.08995 * 110.50909 * 23.84433 * 12 10 9 39 39 H 1.08998 * 110.62597 * 261.19122 * 12 10 9 40 40 H 1.08997 * 110.58309 * 240.59490 * 13 12 10 41 41 H 1.09000 * 110.71110 * 117.74543 * 13 12 10 42 42 H 1.09003 * 113.51527 * 336.47994 * 15 14 13 43 43 H 1.08998 * 113.58332 * 205.89684 * 15 14 13 44 44 H 0.97008 * 119.99965 * 4.91436 * 20 19 17 45 45 H 1.08999 * 113.51942 * 88.32370 * 25 16 15 46 46 H 1.09003 * 113.51069 * 218.91606 * 25 16 15 47 47 H 1.07998 * 120.07090 * 179.75184 * 27 5 4 48 48 H 1.09001 * 109.47243 * 270.27407 * 29 28 27 49 49 H 1.09002 * 109.47206 * 30.28141 * 29 28 27 50 50 H 1.09002 * 109.47199 * 150.27816 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5752 1.2073 -0.0005 5 6 4.2763 0.0002 -0.0005 6 6 5.7547 0.0003 -0.0017 7 8 6.3625 -1.0524 -0.0021 8 7 6.4285 1.1675 -0.0032 9 6 7.8936 1.1675 -0.0049 10 6 8.4034 2.6100 -0.0071 11 1 8.0177 3.1501 0.8575 12 6 9.9488 2.6331 -0.0083 13 6 10.3068 3.8283 -0.9242 14 6 8.9414 4.3602 -1.3763 15 6 8.5158 5.6999 -0.7901 16 7 9.1503 6.3429 -1.9534 17 6 9.7120 7.5635 -2.2180 18 1 9.8504 8.2786 -1.4205 19 6 10.1036 7.8815 -3.5111 20 7 10.5030 9.1028 -3.7962 21 14 10.0638 6.5763 -4.8468 22 1 10.4183 7.1917 -6.1510 23 1 8.7004 5.9934 -4.9288 24 1 11.0409 5.5062 -4.5226 25 6 8.9108 5.1019 -2.7096 26 8 8.0165 3.2778 -1.2307 27 6 3.5755 -1.2067 -0.0054 28 6 2.1958 -1.1997 0.0005 29 6 1.4373 -2.5020 0.0012 30 1 -0.3632 -0.0002 -1.0277 31 1 -0.3632 -0.8899 0.5139 32 1 -0.3634 0.8899 0.5137 33 1 1.6522 2.1335 -0.0004 34 1 4.1115 2.1447 -0.0010 35 1 5.9435 2.0075 -0.0040 36 1 8.2559 0.6531 -0.8950 37 1 8.2579 0.6544 0.8850 38 1 10.3443 1.7046 -0.4201 39 1 10.3312 2.7963 0.9993 40 1 10.8904 3.4928 -1.7815 41 1 10.8501 4.5916 -0.3672 42 1 9.0029 5.9350 0.1562 43 1 7.4350 5.8362 -0.7536 44 1 10.5919 9.7614 -3.0895 45 1 7.9384 5.0729 -3.2012 46 1 9.7301 4.8344 -3.3769 47 1 4.1120 -2.1439 -0.0094 48 1 1.2543 -2.8164 -1.0264 49 1 2.0235 -3.2636 0.5153 50 1 0.4854 -2.3678 0.5150 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053696386.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:50 Heat of formation + Delta-G solvation = 1.937192 kcal Electronic energy + Delta-G solvation = -29579.039472 eV Core-core repulsion = 25573.014084 eV Total energy + Delta-G solvation = -4006.025388 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.63299 -40.22286 -38.93263 -36.99270 -34.79084 -33.77769 -32.47890 -32.35740 -32.05072 -29.71615 -28.17372 -27.45707 -26.57419 -25.62855 -24.02230 -22.50560 -22.24561 -21.52620 -21.31503 -20.00720 -19.16378 -17.95356 -17.47610 -16.79045 -16.34710 -15.89146 -15.63954 -15.48992 -15.16865 -15.07106 -14.84149 -14.58496 -14.40429 -13.86738 -13.70961 -13.40044 -13.29776 -13.19879 -13.05355 -12.99630 -12.96719 -12.47081 -12.35941 -12.02971 -11.95595 -11.67754 -11.57350 -11.55737 -11.33931 -11.27001 -11.06718 -10.70600 -10.46366 -10.35610 -10.09441 -9.72358 -9.32222 -9.27303 -9.14187 -8.98521 -8.90978 -8.90642 -7.21041 -6.37077 -3.28683 0.54702 1.02751 2.62283 2.94491 3.39426 3.42904 3.55668 3.62218 3.83166 4.35123 4.37730 4.49949 4.53788 4.55667 4.61490 4.66693 4.73935 4.78578 4.89067 4.89896 4.97237 5.10261 5.11354 5.16235 5.27132 5.33129 5.36598 5.38979 5.39402 5.44841 5.46633 5.57139 5.69493 5.75582 5.77896 5.88766 5.98502 6.04804 6.12194 6.13624 6.18356 6.23048 6.23265 6.24006 6.29741 6.33269 6.51348 6.57598 7.00813 7.21278 7.32152 8.02629 8.18113 8.91963 9.44124 10.28854 11.15576 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015745 B = 0.002219 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.951443 B =12614.702969 C =13575.751913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.063 4.063 3 C -0.124 4.124 4 C -0.085 4.085 5 C -0.136 4.136 6 C 0.559 3.441 7 O -0.543 6.543 8 N -0.718 5.718 9 C 0.128 3.872 10 C 0.062 3.938 11 H 0.075 0.925 12 C -0.145 4.145 13 C -0.115 4.115 14 C 0.059 3.941 15 C 0.111 3.889 16 N -0.619 5.619 17 C -0.304 4.304 18 H 0.084 0.916 19 C -0.023 4.023 20 N -0.931 5.931 21 Si 1.068 2.932 22 H -0.294 1.294 23 H -0.285 1.285 24 H -0.293 1.293 25 C 0.115 3.885 26 O -0.354 6.354 27 C -0.057 4.057 28 C -0.098 4.098 29 C -0.117 4.117 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.405 0.595 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.047 0.953 43 H 0.044 0.956 44 H 0.261 0.739 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.135 0.865 48 H 0.072 0.928 49 H 0.068 0.932 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.742 -21.638 11.370 29.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.064 4.064 3 C -0.142 4.142 4 C -0.104 4.104 5 C -0.139 4.139 6 C 0.346 3.654 7 O -0.421 6.421 8 N -0.370 5.370 9 C 0.005 3.995 10 C 0.003 3.997 11 H 0.093 0.907 12 C -0.183 4.183 13 C -0.152 4.152 14 C 0.019 3.981 15 C -0.016 4.016 16 N -0.350 5.350 17 C -0.430 4.430 18 H 0.102 0.898 19 C -0.222 4.222 20 N -0.573 5.573 21 Si 0.900 3.100 22 H -0.221 1.221 23 H -0.212 1.212 24 H -0.221 1.221 25 C -0.011 4.011 26 O -0.272 6.272 27 C -0.075 4.075 28 C -0.098 4.098 29 C -0.173 4.173 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.241 0.759 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.153 0.847 48 H 0.091 0.909 49 H 0.087 0.913 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.091 -22.436 9.561 29.218 hybrid contribution -0.293 0.982 1.752 2.030 sum -16.384 -21.454 11.314 29.270 Atomic orbital electron populations 1.20936 0.90960 1.03173 1.02749 1.19999 0.96290 0.92608 0.97465 1.20991 0.93857 0.97826 1.01515 1.21329 0.94591 0.97096 0.97377 1.19897 0.92722 0.94463 1.06810 1.18266 0.87155 0.83726 0.76232 1.90761 1.69933 1.31204 1.50243 1.45838 1.07509 1.08755 1.74891 1.21516 0.79384 0.95475 1.03144 1.23219 0.94827 0.92241 0.89385 0.90702 1.22944 0.94435 0.99850 1.01081 1.22337 0.96382 0.96801 0.99706 1.23650 0.88421 0.86258 0.99820 1.22669 0.96845 0.89260 0.92837 1.45749 1.67587 1.12183 1.09435 1.20078 1.37158 0.89273 0.96481 0.89806 1.25744 0.98963 1.00287 0.97197 1.70932 1.50207 1.01924 1.34260 0.83731 0.76377 0.73856 0.76017 1.22080 1.21166 1.22079 1.22683 0.99726 0.85597 0.93061 1.88953 1.53881 1.43831 1.40576 1.21125 0.93089 0.97769 0.95557 1.19734 0.93344 0.95254 1.01514 1.20868 1.00030 0.93816 1.02629 0.90688 0.90878 0.91270 0.85269 0.85407 0.75907 0.90387 0.90056 0.90381 0.90258 0.90376 0.89632 0.93508 0.93827 0.92870 0.92832 0.92528 0.84700 0.90933 0.91341 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 9.60 36.01 0.35 -0.29 16 2 C -0.06 -0.50 5.89 -104.53 -0.62 -1.11 16 3 C -0.12 -1.01 9.68 -39.64 -0.38 -1.39 16 4 C -0.09 -0.78 9.54 -39.19 -0.37 -1.16 16 5 C -0.14 -1.50 5.87 -104.97 -0.62 -2.12 16 6 C 0.56 7.18 7.77 -12.33 -0.10 7.09 16 7 O -0.54 -8.62 16.35 5.32 0.09 -8.53 16 8 N -0.72 -8.11 5.47 -61.25 -0.33 -8.44 16 9 C 0.13 1.45 5.28 -4.04 -0.02 1.43 16 10 C 0.06 0.73 3.35 -25.92 -0.09 0.64 16 11 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 12 C -0.14 -1.65 6.65 -24.98 -0.17 -1.82 16 13 C -0.11 -1.74 6.50 -25.62 -0.17 -1.91 16 14 C 0.06 1.04 1.39 -91.01 -0.13 0.92 16 15 C 0.11 2.17 8.18 -7.86 -0.06 2.10 16 16 N -0.62 -15.14 3.68 -184.90 -0.68 -15.82 16 17 C -0.30 -8.68 11.08 -15.06 -0.17 -8.84 16 18 H 0.08 2.51 8.05 -52.48 -0.42 2.08 16 19 C -0.02 -0.68 5.50 -17.43 -0.10 -0.77 16 20 N -0.93 -29.22 13.70 55.49 0.76 -28.46 16 21 Si 1.07 26.82 25.13 -169.99 -4.27 22.54 16 22 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 23 H -0.28 -6.74 6.10 56.52 0.34 -6.40 16 24 H -0.29 -6.91 6.63 56.52 0.37 -6.54 16 25 C 0.11 2.49 5.28 -7.71 -0.04 2.45 16 26 O -0.35 -5.52 11.12 -35.23 -0.39 -5.91 16 27 C -0.06 -0.58 9.25 -39.19 -0.36 -0.95 16 28 C -0.10 -0.83 5.87 -104.68 -0.61 -1.45 16 29 C -0.12 -0.68 9.59 36.00 0.35 -0.34 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.31 5.93 -51.93 -0.31 0.00 16 32 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 33 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 34 H 0.13 0.98 6.41 -52.49 -0.34 0.64 16 35 H 0.40 3.98 6.51 -40.82 -0.27 3.71 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.80 7.87 -51.93 -0.41 0.40 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.08 1.20 8.11 -51.93 -0.42 0.78 16 41 H 0.09 1.35 7.92 -51.93 -0.41 0.94 16 42 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 43 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.26 8.07 8.73 -40.82 -0.36 7.71 16 45 H 0.05 1.18 7.67 -51.93 -0.40 0.78 16 46 H 0.06 1.25 4.69 -51.93 -0.24 1.01 16 47 H 0.14 1.40 7.65 -52.49 -0.40 1.00 16 48 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 50 H 0.07 0.32 5.93 -51.93 -0.31 0.01 16 LS Contribution 396.33 15.07 5.97 5.97 Total: -1.00 -34.50 396.33 -9.97 -44.47 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -7.80 Total: 1.69 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -3.31 Total: -7.52 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -0.26 Total: -52.72 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.30 Total: -14.44 kcal Atomic # 14 Polarization: 26.82 SS G_CDS: -4.27 Total: 22.54 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.50 -9.97 -44.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053696386.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.406 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds