Wall clock time and date at job start Wed Apr 1 2020 03:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38385 * 119.85222 * 2 1 4 4 C 1.37936 * 120.14751 * 180.02562 * 3 2 1 5 5 C 1.39594 * 119.85297 * 359.97438 * 4 3 2 6 6 C 1.47839 * 120.14738 * 179.97438 * 5 4 3 7 7 O 1.21555 * 120.00392 * 180.02562 * 6 5 4 8 8 N 1.34781 * 119.99792 * 359.97438 * 6 5 4 9 9 C 1.46507 * 119.99725 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.46647 * 179.97438 * 9 8 6 11 11 H 1.09002 * 110.36971 * 57.81596 * 10 9 8 12 12 C 1.54555 * 110.32138 * 179.97438 * 10 9 8 13 13 C 1.54774 * 104.07821 * 142.48979 * 12 10 9 14 14 C 1.53348 * 103.67263 * 359.14144 * 13 12 10 15 15 C 1.52303 * 116.13344 * 108.91148 * 14 13 12 16 16 N 1.47284 * 87.68708 * 91.18103 * 15 14 13 17 17 C 1.36942 * 135.92786 * 206.12790 * 16 15 14 18 18 H 1.08003 * 120.00136 * 6.79529 * 17 16 15 19 19 C 1.38804 * 119.99713 * 186.79235 * 17 16 15 20 20 N 1.31621 * 119.99893 * 172.37074 * 19 17 16 21 21 Si 1.86794 * 120.00271 * 352.37001 * 19 17 16 22 22 H 1.48509 * 109.47067 * 175.35403 * 21 19 17 23 23 H 1.48499 * 109.47130 * 55.35383 * 21 19 17 24 24 H 1.48497 * 109.47427 * 295.35226 * 21 19 17 25 25 C 1.47281 * 88.14217 * 26.38451 * 16 15 14 26 26 O 1.43112 * 106.44597 * 337.44794 * 14 13 12 27 27 C 1.39561 * 119.70939 * 0.25398 * 5 4 3 28 28 C 1.37973 * 119.85336 * 359.49062 * 27 5 4 29 29 C 1.50699 * 119.92977 * 180.25550 * 28 27 5 30 30 H 1.08996 * 109.46538 * 90.00920 * 1 2 3 31 31 H 1.08996 * 109.46664 * 210.00514 * 1 2 3 32 32 H 1.08994 * 109.47497 * 330.00323 * 1 2 3 33 33 H 1.08003 * 119.92708 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.07233 * 179.97438 * 4 3 2 35 35 H 0.96998 * 120.00139 * 359.97438 * 8 6 5 36 36 H 1.09000 * 109.47167 * 60.00159 * 9 8 6 37 37 H 1.08993 * 109.46813 * 299.99688 * 9 8 6 38 38 H 1.08995 * 110.50909 * 23.84433 * 12 10 9 39 39 H 1.08998 * 110.62597 * 261.19122 * 12 10 9 40 40 H 1.08997 * 110.58309 * 240.59490 * 13 12 10 41 41 H 1.09000 * 110.71110 * 117.74543 * 13 12 10 42 42 H 1.09003 * 113.51527 * 336.47994 * 15 14 13 43 43 H 1.08998 * 113.58332 * 205.89684 * 15 14 13 44 44 H 0.97008 * 119.99965 * 4.91436 * 20 19 17 45 45 H 1.08999 * 113.51942 * 88.32370 * 25 16 15 46 46 H 1.09003 * 113.51069 * 218.91606 * 25 16 15 47 47 H 1.07998 * 120.07090 * 179.75184 * 27 5 4 48 48 H 1.09001 * 109.47243 * 270.27407 * 29 28 27 49 49 H 1.09002 * 109.47206 * 30.28141 * 29 28 27 50 50 H 1.09002 * 109.47199 * 150.27816 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5752 1.2073 -0.0005 5 6 4.2763 0.0002 -0.0005 6 6 5.7547 0.0003 -0.0017 7 8 6.3625 -1.0524 -0.0021 8 7 6.4285 1.1675 -0.0032 9 6 7.8936 1.1675 -0.0049 10 6 8.4034 2.6100 -0.0071 11 1 8.0177 3.1501 0.8575 12 6 9.9488 2.6331 -0.0083 13 6 10.3068 3.8283 -0.9242 14 6 8.9414 4.3602 -1.3763 15 6 8.5158 5.6999 -0.7901 16 7 9.1503 6.3429 -1.9534 17 6 9.7120 7.5635 -2.2180 18 1 9.8504 8.2786 -1.4205 19 6 10.1036 7.8815 -3.5111 20 7 10.5030 9.1028 -3.7962 21 14 10.0638 6.5763 -4.8468 22 1 10.4183 7.1917 -6.1510 23 1 8.7004 5.9934 -4.9288 24 1 11.0409 5.5062 -4.5226 25 6 8.9108 5.1019 -2.7096 26 8 8.0165 3.2778 -1.2307 27 6 3.5755 -1.2067 -0.0054 28 6 2.1958 -1.1997 0.0005 29 6 1.4373 -2.5020 0.0012 30 1 -0.3632 -0.0002 -1.0277 31 1 -0.3632 -0.8899 0.5139 32 1 -0.3634 0.8899 0.5137 33 1 1.6522 2.1335 -0.0004 34 1 4.1115 2.1447 -0.0010 35 1 5.9435 2.0075 -0.0040 36 1 8.2559 0.6531 -0.8950 37 1 8.2579 0.6544 0.8850 38 1 10.3443 1.7046 -0.4201 39 1 10.3312 2.7963 0.9993 40 1 10.8904 3.4928 -1.7815 41 1 10.8501 4.5916 -0.3672 42 1 9.0029 5.9350 0.1562 43 1 7.4350 5.8362 -0.7536 44 1 10.5919 9.7614 -3.0895 45 1 7.9384 5.0729 -3.2012 46 1 9.7301 4.8344 -3.3769 47 1 4.1120 -2.1439 -0.0094 48 1 1.2543 -2.8164 -1.0264 49 1 2.0235 -3.2636 0.5153 50 1 0.4854 -2.3678 0.5150 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053696386.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:49 Heat of formation + Delta-G solvation = -21.101642 kcal Electronic energy + Delta-G solvation = -29580.038510 eV Core-core repulsion = 25573.014084 eV Total energy + Delta-G solvation = -4007.024426 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.76912 -41.25082 -39.76580 -38.41327 -35.85788 -34.59510 -34.33743 -33.14239 -33.07769 -30.98271 -29.15346 -28.54790 -27.49109 -27.21226 -25.12525 -23.52463 -23.07556 -22.92437 -22.30170 -20.89576 -20.71272 -19.52315 -18.76476 -17.76530 -17.49277 -17.26180 -16.57928 -16.44934 -16.23481 -16.08257 -16.02668 -15.68063 -15.17810 -15.14638 -15.06286 -14.63893 -14.59193 -14.29633 -13.92093 -13.71645 -13.59109 -13.45669 -13.38985 -13.15657 -12.82654 -12.80806 -12.71047 -12.63845 -12.52735 -12.28647 -12.21415 -12.05934 -11.89376 -11.66402 -11.40733 -11.24866 -11.06583 -11.03900 -10.49716 -10.24893 -9.81798 -9.55779 -9.25645 -8.68403 -5.51510 -0.18131 0.36648 1.37086 1.45168 1.64223 1.77938 2.06022 2.49756 2.58262 2.81775 2.93729 3.22262 3.37254 3.55887 3.63370 3.68522 3.78937 3.91258 3.93538 4.02507 4.09063 4.23517 4.28327 4.34113 4.40021 4.45067 4.52751 4.60687 4.61005 4.68059 4.71542 4.77933 4.80538 4.81813 4.82901 4.92695 4.93864 4.97725 4.99058 5.09423 5.11460 5.17177 5.20977 5.28425 5.29691 5.36878 5.40150 5.63649 5.90394 5.94198 5.96033 6.43325 6.65186 7.10041 7.27384 8.20268 8.87092 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015745 B = 0.002219 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.951443 B =12614.702969 C =13575.751913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.129 4.129 4 C -0.089 4.089 5 C -0.158 4.158 6 C 0.556 3.444 7 O -0.582 6.582 8 N -0.712 5.712 9 C 0.131 3.869 10 C 0.063 3.937 11 H 0.094 0.906 12 C -0.134 4.134 13 C -0.118 4.118 14 C 0.083 3.917 15 C 0.110 3.890 16 N -0.648 5.648 17 C -0.287 4.287 18 H 0.057 0.943 19 C -0.081 4.081 20 N -0.967 5.967 21 Si 1.103 2.897 22 H -0.303 1.303 23 H -0.265 1.265 24 H -0.271 1.271 25 C 0.102 3.898 26 O -0.363 6.363 27 C -0.074 4.074 28 C -0.104 4.104 29 C -0.117 4.117 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.151 0.849 34 H 0.141 0.859 35 H 0.412 0.588 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.248 0.752 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.124 0.876 48 H 0.079 0.921 49 H 0.068 0.932 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.603 -23.751 12.481 32.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.064 4.064 3 C -0.147 4.147 4 C -0.107 4.107 5 C -0.161 4.161 6 C 0.345 3.655 7 O -0.463 6.463 8 N -0.363 5.363 9 C 0.008 3.992 10 C 0.005 3.995 11 H 0.112 0.888 12 C -0.172 4.172 13 C -0.156 4.156 14 C 0.042 3.958 15 C -0.016 4.016 16 N -0.378 5.378 17 C -0.415 4.415 18 H 0.075 0.925 19 C -0.274 4.274 20 N -0.613 5.613 21 Si 0.930 3.070 22 H -0.231 1.231 23 H -0.190 1.190 24 H -0.197 1.197 25 C -0.023 4.023 26 O -0.281 6.281 27 C -0.093 4.093 28 C -0.104 4.104 29 C -0.173 4.173 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.169 0.831 34 H 0.158 0.842 35 H 0.250 0.750 36 H 0.083 0.917 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.123 0.877 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.142 0.858 48 H 0.097 0.903 49 H 0.087 0.913 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.982 -24.569 10.723 32.279 hybrid contribution 0.166 1.618 1.528 2.232 sum -17.816 -22.950 12.251 31.531 Atomic orbital electron populations 1.21011 0.88806 1.04355 1.03574 1.20395 0.97909 0.92198 0.95904 1.21326 0.93577 0.98993 1.00814 1.21500 0.95274 0.96852 0.97109 1.19883 0.91776 0.95544 1.08926 1.18588 0.87982 0.83445 0.75451 1.90729 1.70810 1.32488 1.52321 1.45813 1.07640 1.08746 1.74131 1.21506 0.79346 0.95045 1.03296 1.23422 0.95428 0.92250 0.88367 0.88811 1.22939 0.93794 0.98716 1.01752 1.22367 0.94771 0.98091 1.00397 1.23145 0.90076 0.86196 0.96372 1.22849 0.97000 0.89792 0.91925 1.45774 1.68144 1.11772 1.12159 1.19941 1.35578 0.90389 0.95563 0.92535 1.26960 0.99339 1.01216 0.99837 1.71026 1.53235 1.02971 1.34030 0.83313 0.77964 0.72463 0.73294 1.23053 1.19046 1.19709 1.22826 0.99307 0.85104 0.95014 1.88939 1.53499 1.43113 1.42530 1.21202 0.94137 0.97294 0.96640 1.20031 0.92751 0.96811 1.00842 1.20928 1.00487 0.92547 1.03322 0.89863 0.89699 0.90172 0.83109 0.84153 0.75011 0.91661 0.88545 0.88968 0.87655 0.90661 0.90357 0.92276 0.92991 0.94265 0.93029 0.92854 0.85796 0.90266 0.91292 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.60 71.24 0.68 -0.20 16 2 C -0.06 -0.86 5.89 -19.80 -0.12 -0.98 16 3 C -0.13 -1.82 9.68 22.23 0.22 -1.61 16 4 C -0.09 -1.50 9.54 22.53 0.21 -1.29 16 5 C -0.16 -3.43 5.87 -20.09 -0.12 -3.55 16 6 C 0.56 14.08 7.77 86.78 0.67 14.75 16 7 O -0.58 -18.64 16.35 -3.89 -0.06 -18.70 16 8 N -0.71 -14.92 5.47 -465.97 -2.55 -17.46 16 9 C 0.13 2.65 5.28 86.38 0.46 3.11 16 10 C 0.06 1.28 3.35 31.12 0.10 1.38 16 11 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 12 C -0.13 -2.55 6.65 31.73 0.21 -2.34 16 13 C -0.12 -3.29 6.50 31.32 0.20 -3.08 16 14 C 0.08 2.73 1.39 -11.04 -0.02 2.72 16 15 C 0.11 4.10 8.18 83.48 0.68 4.78 16 16 N -0.65 -31.20 3.68 -740.40 -2.73 -33.93 16 17 C -0.29 -16.64 11.08 84.03 0.93 -15.71 16 18 H 0.06 3.50 8.05 -2.91 -0.02 3.47 16 19 C -0.08 -4.88 5.50 84.86 0.47 -4.41 16 20 N -0.97 -62.52 13.70 21.65 0.30 -62.23 16 21 Si 1.10 54.16 25.13 68.60 1.72 55.88 16 22 H -0.30 -15.18 7.11 99.48 0.71 -14.48 16 23 H -0.27 -11.99 6.10 99.48 0.61 -11.38 16 24 H -0.27 -12.15 6.63 99.48 0.66 -11.49 16 25 C 0.10 4.26 5.28 83.58 0.44 4.71 16 26 O -0.36 -10.26 11.12 -148.98 -1.66 -11.92 16 27 C -0.07 -1.52 9.25 22.53 0.21 -1.31 16 28 C -0.10 -1.64 5.87 -19.90 -0.12 -1.75 16 29 C -0.12 -1.16 9.59 71.24 0.68 -0.48 16 30 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.08 0.43 5.93 -2.39 -0.01 0.41 16 32 H 0.08 0.43 8.08 -2.39 -0.02 0.41 16 33 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 34 H 0.14 1.88 6.41 -2.91 -0.02 1.86 16 35 H 0.41 7.25 6.51 -92.71 -0.60 6.65 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.09 1.55 7.87 -2.39 -0.02 1.53 16 39 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.07 2.14 8.11 -2.39 -0.02 2.12 16 41 H 0.08 2.30 7.92 -2.39 -0.02 2.28 16 42 H 0.06 2.05 8.07 -2.39 -0.02 2.04 16 43 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.25 16.02 8.73 -92.70 -0.81 15.21 16 45 H 0.05 2.17 7.67 -2.39 -0.02 2.16 16 46 H 0.05 2.26 4.69 -2.39 -0.01 2.25 16 47 H 0.12 2.71 7.65 -2.91 -0.02 2.69 16 48 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.07 0.68 8.09 -2.39 -0.02 0.66 16 50 H 0.09 0.56 5.93 -2.39 -0.01 0.55 16 Total: -1.00 -76.96 396.33 1.00 -75.96 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.16 Total: 17.66 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 5.81 Total: -5.26 kcal Atomic # 7 Polarization: -108.64 SS G_CDS: -4.98 Total: -113.62 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -1.72 Total: -30.62 kcal Atomic # 14 Polarization: 54.16 SS G_CDS: 1.72 Total: 55.88 kcal Total: -76.96 1.00 -75.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053696386.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.862 kcal (2) G-P(sol) polarization free energy of solvation -76.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds