Wall clock time and date at job start Wed Apr 1 2020 03:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38236 * 119.99596 * 2 1 4 4 C 1.38238 * 120.00231 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.00423 * 180.02562 * 4 3 2 6 6 C 1.38236 * 119.99551 * 0.02562 * 4 3 2 7 7 C 1.38238 * 120.00358 * 359.96263 * 6 4 3 8 8 C 1.50698 * 120.00295 * 179.97438 * 7 6 4 9 9 C 1.50698 * 109.46944 * 89.99702 * 8 7 6 10 10 O 1.21283 * 120.00472 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99538 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72653 * 11 9 8 13 13 H 1.08999 * 110.45659 * 32.67883 * 12 11 9 14 14 C 1.54556 * 110.51133 * 269.93244 * 12 11 9 15 15 O 1.44629 * 105.03112 * 217.72138 * 14 12 11 16 16 C 1.43242 * 105.22687 * 39.02762 * 15 14 12 17 17 C 1.52887 * 115.84399 * 90.92858 * 16 15 14 18 18 N 1.47777 * 85.78364 * 94.51106 * 17 16 15 19 19 C 1.36945 * 134.39926 * 203.86936 * 18 17 16 20 20 H 1.07998 * 119.99460 * 179.97438 * 19 18 17 21 21 C 1.38806 * 120.00022 * 0.02562 * 19 18 17 22 22 N 1.31614 * 120.00181 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99954 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46914 * 60.00226 * 23 21 19 25 25 H 1.48492 * 109.47323 * 179.97438 * 23 21 19 26 26 H 1.48491 * 109.47199 * 300.00305 * 23 21 19 27 27 C 1.47783 * 91.19833 * 23.87515 * 18 17 16 28 28 C 1.53470 * 106.25951 * 321.06193 * 16 15 14 29 29 C 1.38231 * 120.00557 * 180.21360 * 2 1 3 30 30 H 1.09005 * 109.47032 * 90.00266 * 1 2 3 31 31 H 1.09000 * 109.46660 * 209.99732 * 1 2 3 32 32 H 1.08999 * 109.47207 * 329.99628 * 1 2 3 33 33 H 1.07999 * 119.99987 * 0.02562 * 3 2 1 34 34 H 1.09003 * 109.46949 * 270.02074 * 5 4 3 35 35 H 1.09010 * 109.47137 * 30.01569 * 5 4 3 36 36 H 1.08994 * 109.47367 * 150.01758 * 5 4 3 37 37 H 1.07998 * 119.99894 * 179.97438 * 6 4 3 38 38 H 1.09003 * 109.46601 * 330.00143 * 8 7 6 39 39 H 1.08993 * 109.46922 * 210.00442 * 8 7 6 40 40 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 41 41 H 1.09008 * 110.32585 * 336.61006 * 14 12 11 42 42 H 1.09000 * 110.32902 * 98.83286 * 14 12 11 43 43 H 1.09006 * 113.82120 * 208.72828 * 17 16 15 44 44 H 1.09001 * 113.82400 * 340.29042 * 17 16 15 45 45 H 0.97006 * 120.00178 * 179.97438 * 22 21 19 46 46 H 1.09004 * 113.82001 * 221.91293 * 27 18 17 47 47 H 1.08996 * 113.93767 * 90.35421 * 27 18 17 48 48 H 1.09000 * 110.57242 * 264.15450 * 28 16 15 49 49 H 1.08996 * 110.70151 * 141.33356 * 28 16 15 50 50 H 1.07996 * 119.99749 * 0.04072 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.3339 2.5025 0.0011 6 6 4.2717 0.0002 0.0005 7 6 3.5806 -1.1970 0.0008 8 6 4.3342 -2.5021 0.0002 9 6 4.5862 -2.9372 1.4208 10 8 4.1923 -2.2550 2.3430 11 7 5.2485 -4.0850 1.6665 12 6 5.4988 -4.5050 3.0475 13 1 4.6830 -4.1863 3.6964 14 6 6.8466 -3.9394 3.5497 15 8 7.4145 -4.9911 4.3642 16 6 7.1046 -6.2086 3.6762 17 6 8.1511 -6.6916 2.6718 18 7 8.6744 -7.5178 3.7797 19 6 9.8910 -8.0777 4.0656 20 1 10.0206 -8.6555 4.9688 21 6 10.9578 -7.9017 3.1952 22 7 10.8000 -7.1971 2.0948 23 14 12.6175 -8.6648 3.5855 24 1 12.4736 -10.1396 3.6829 25 1 13.5814 -8.3323 2.5060 26 1 13.1167 -8.1298 4.8777 27 6 7.3604 -7.4986 4.4558 28 6 5.6833 -6.0395 3.1225 29 6 2.1983 -1.1970 -0.0045 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 1.6580 2.1325 0.0004 34 1 4.5157 2.8175 -1.0264 35 1 3.7447 3.2620 0.5152 36 1 5.2863 2.3720 0.5150 37 1 5.3517 0.0003 0.0005 38 1 5.2863 -2.3715 -0.5142 39 1 3.7449 -3.2616 -0.5134 40 1 5.5633 -4.6308 0.9290 41 1 7.5016 -3.7174 2.7072 42 1 6.6818 -3.0438 4.1487 43 1 7.7357 -7.2720 1.8479 44 1 8.8375 -5.9118 2.3419 45 1 11.5456 -7.0737 1.4867 46 1 7.4225 -7.3561 5.5347 47 1 6.7049 -8.3219 4.1719 48 1 4.9529 -6.4804 3.8009 49 1 5.6006 -6.4841 2.1308 50 1 1.6584 -2.1323 -0.0086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053915534.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:11 Heat of formation + Delta-G solvation = -5.385712 kcal Electronic energy + Delta-G solvation = -29544.338967 eV Core-core repulsion = 25537.996035 eV Total energy + Delta-G solvation = -4006.342932 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.49416 -39.84339 -38.86935 -36.13285 -34.39530 -33.71599 -33.70497 -32.08786 -30.60740 -28.71435 -27.86954 -27.07166 -26.89197 -25.84665 -24.92885 -22.56353 -21.75606 -20.93652 -20.78321 -20.21504 -19.03615 -17.25915 -16.77200 -16.56575 -16.24595 -16.13415 -15.22719 -15.07302 -15.02358 -14.81382 -14.48815 -14.29283 -13.96150 -13.73779 -13.45941 -13.30008 -13.15705 -13.07006 -12.98739 -12.77792 -12.76711 -12.50441 -12.14103 -11.94035 -11.70597 -11.63199 -11.52560 -11.20802 -11.17176 -11.15323 -11.09611 -10.81767 -10.47025 -10.28580 -9.93317 -9.78173 -9.52170 -9.09386 -8.87355 -8.79723 -8.76740 -8.69339 -6.88161 -5.75331 -3.06806 1.16594 1.22539 2.57211 3.06066 3.41403 3.45134 3.46290 3.61182 4.31474 4.38737 4.47180 4.53106 4.58234 4.64066 4.87185 4.93713 4.97240 5.03456 5.06838 5.12476 5.16339 5.24373 5.29061 5.31146 5.35761 5.38155 5.39576 5.41554 5.44746 5.60427 5.61348 5.63920 5.85445 5.94316 6.00577 6.01472 6.05036 6.09184 6.35184 6.35953 6.36380 6.40822 6.46301 6.52548 6.58657 6.86254 6.94526 7.17980 7.44444 7.48265 7.65827 7.98900 8.17305 9.05533 9.72034 10.58663 11.42167 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020886 B = 0.001992 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.266876 B =14053.636162 C =14687.913056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.084 4.084 3 C -0.123 4.123 4 C -0.082 4.082 5 C -0.114 4.114 6 C -0.110 4.110 7 C -0.056 4.056 8 C -0.105 4.105 9 C 0.515 3.485 10 O -0.532 6.532 11 N -0.719 5.719 12 C 0.114 3.886 13 H 0.100 0.900 14 C 0.038 3.962 15 O -0.335 6.335 16 C 0.055 3.945 17 C 0.153 3.847 18 N -0.605 5.605 19 C -0.219 4.219 20 H 0.080 0.920 21 C -0.009 4.009 22 N -0.924 5.924 23 Si 0.913 3.087 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.129 3.871 28 C -0.146 4.146 29 C -0.111 4.111 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.118 0.882 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.120 0.880 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.404 0.596 41 H 0.062 0.938 42 H 0.089 0.911 43 H 0.034 0.966 44 H 0.077 0.923 45 H 0.253 0.747 46 H 0.053 0.947 47 H 0.048 0.952 48 H 0.083 0.917 49 H 0.084 0.916 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.908 14.553 -8.437 26.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.084 4.084 3 C -0.141 4.141 4 C -0.082 4.082 5 C -0.171 4.171 6 C -0.128 4.128 7 C -0.056 4.056 8 C -0.144 4.144 9 C 0.301 3.699 10 O -0.408 6.408 11 N -0.373 5.373 12 C 0.009 3.991 13 H 0.118 0.882 14 C -0.040 4.040 15 O -0.253 6.253 16 C 0.014 3.986 17 C 0.028 3.972 18 N -0.331 5.331 19 C -0.347 4.347 20 H 0.098 0.902 21 C -0.205 4.205 22 N -0.571 5.571 23 Si 0.744 3.256 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.003 3.997 28 C -0.186 4.186 29 C -0.129 4.129 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.136 0.864 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.138 0.862 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.239 0.761 41 H 0.080 0.920 42 H 0.107 0.893 43 H 0.051 0.949 44 H 0.095 0.905 45 H 0.063 0.937 46 H 0.071 0.929 47 H 0.065 0.935 48 H 0.101 0.899 49 H 0.102 0.898 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -19.710 14.987 -7.597 25.900 hybrid contribution 1.058 -0.830 -0.445 1.416 sum -18.651 14.157 -8.042 24.758 Atomic orbital electron populations 1.20776 0.91276 1.02787 1.02131 1.19825 0.95924 0.93042 0.99594 1.20865 0.93508 0.97416 1.02305 1.19841 0.93798 0.95205 0.99402 1.20787 1.00048 0.94045 1.02188 1.20848 0.99594 0.91439 1.00917 1.19214 0.93456 0.93503 0.99434 1.20699 1.02510 0.96292 0.94934 1.20531 0.77490 0.80687 0.91220 1.90732 1.50607 1.53292 1.46168 1.46107 1.58217 1.24272 1.08661 1.22417 0.98865 0.94774 0.83046 0.88228 1.23785 0.92387 0.92016 0.95848 1.89035 1.77483 1.14254 1.44484 1.23762 0.91591 0.87078 0.96165 1.22585 0.91063 0.93454 0.90130 1.45827 1.04409 1.60981 1.21886 1.18962 0.84868 1.26145 1.04682 0.90223 1.24762 0.98107 1.00758 0.96884 1.69793 1.30881 1.43925 1.12497 0.86178 0.83482 0.78733 0.77253 1.21212 1.21584 1.21057 1.22518 0.88283 0.91631 0.97299 1.23028 0.98864 0.93903 1.02770 1.20805 0.93321 0.97546 1.01245 0.91289 0.91552 0.91635 0.86361 0.91244 0.91630 0.91435 0.86230 0.87676 0.87849 0.76134 0.91959 0.89262 0.94871 0.90485 0.93681 0.92887 0.93459 0.89859 0.89783 0.86378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.01 0.36 -0.43 16 2 C -0.08 -0.81 5.88 -104.62 -0.62 -1.42 16 3 C -0.12 -1.17 9.36 -39.58 -0.37 -1.54 16 4 C -0.08 -0.82 5.88 -104.62 -0.62 -1.44 16 5 C -0.11 -0.86 10.01 36.00 0.36 -0.50 16 6 C -0.11 -1.17 9.36 -39.58 -0.37 -1.54 16 7 C -0.06 -0.59 4.37 -104.62 -0.46 -1.05 16 8 C -0.10 -0.92 5.83 -29.04 -0.17 -1.09 16 9 C 0.51 6.20 7.82 -10.99 -0.09 6.11 16 10 O -0.53 -8.57 15.68 5.55 0.09 -8.48 16 11 N -0.72 -8.09 5.08 -52.13 -0.27 -8.35 16 12 C 0.11 1.56 3.49 -66.20 -0.23 1.33 16 13 H 0.10 1.42 7.56 -51.93 -0.39 1.03 16 14 C 0.04 0.62 7.37 37.97 0.28 0.90 16 15 O -0.34 -6.83 11.44 -35.23 -0.40 -7.23 16 16 C 0.06 1.05 1.28 -90.66 -0.12 0.94 16 17 C 0.15 3.55 6.99 -3.40 -0.02 3.52 16 18 N -0.60 -15.82 3.71 -183.61 -0.68 -16.50 16 19 C -0.22 -6.28 10.70 -15.06 -0.16 -6.44 16 20 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 21 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 22 N -0.92 -27.50 11.40 55.49 0.63 -26.87 16 23 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 27 C 0.13 2.68 8.47 -3.40 -0.03 2.65 16 28 C -0.15 -2.04 6.24 -25.57 -0.16 -2.20 16 29 C -0.11 -1.14 9.36 -39.58 -0.37 -1.51 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.43 8.09 -51.92 -0.42 0.01 16 36 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 37 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.11 0.74 8.09 -51.93 -0.42 0.32 16 39 H 0.10 0.66 8.08 -51.93 -0.42 0.24 16 40 H 0.40 3.65 8.38 -40.82 -0.34 3.30 16 41 H 0.06 1.04 8.06 -51.92 -0.42 0.62 16 42 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.03 0.75 7.96 -51.93 -0.41 0.34 16 44 H 0.08 2.02 7.20 -51.93 -0.37 1.64 16 45 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 47 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.08 1.05 8.12 -51.93 -0.42 0.63 16 49 H 0.08 1.04 7.40 -51.93 -0.38 0.66 16 50 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 410.32 15.07 6.18 6.18 Total: -1.00 -35.52 410.32 -10.53 -46.05 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -8.19 Total: 1.83 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -2.87 Total: -4.06 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -0.31 Total: -51.72 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.32 Total: -15.71 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.52 -10.53 -46.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053915534.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.664 kcal (2) G-P(sol) polarization free energy of solvation -35.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds