Wall clock time and date at job start Wed Apr 1 2020 04:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38258 * 120.00249 * 2 1 4 4 C 1.38211 * 119.99987 * 180.02562 * 3 2 1 5 5 C 1.38260 * 120.00162 * 359.97438 * 4 3 2 6 6 C 1.38209 * 119.99985 * 359.96264 * 5 4 3 7 7 C 1.50692 * 120.00004 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.46978 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47079 * 299.99488 * 7 6 5 10 10 C 1.50698 * 109.47411 * 59.99452 * 7 6 5 11 11 O 1.21281 * 119.99714 * 0.02562 * 10 7 6 12 12 N 1.34783 * 119.99779 * 180.02562 * 10 7 6 13 13 C 1.46506 * 119.99529 * 180.02562 * 12 10 7 14 14 H 1.09002 * 110.97335 * 322.30681 * 13 12 10 15 15 C 1.55016 * 111.10460 * 86.45373 * 13 12 10 16 16 O 1.43908 * 105.18072 * 81.91638 * 15 13 12 17 17 C 1.42393 * 109.55697 * 24.29484 * 16 15 13 18 18 C 1.52703 * 116.14400 * 129.84646 * 17 16 15 19 19 N 1.47216 * 87.79328 * 90.69997 * 18 17 16 20 20 C 1.36938 * 135.97080 * 206.45329 * 19 18 17 21 21 H 1.08003 * 120.00145 * 349.92729 * 20 19 18 22 22 C 1.38809 * 120.00264 * 169.91777 * 20 19 18 23 23 N 1.31620 * 120.00026 * 157.66810 * 22 20 19 24 24 Si 1.86799 * 119.99892 * 337.67682 * 22 20 19 25 25 H 1.48504 * 109.47098 * 89.99318 * 24 22 20 26 26 H 1.48494 * 109.47377 * 209.99615 * 24 22 20 27 27 H 1.48499 * 109.47152 * 329.99909 * 24 22 20 28 28 C 1.47206 * 88.05594 * 26.71648 * 19 18 17 29 29 C 1.53658 * 108.53585 * 358.08424 * 17 16 15 30 30 C 1.38219 * 119.99919 * 180.21257 * 2 1 3 31 31 H 1.09008 * 109.47084 * 89.99371 * 1 2 3 32 32 H 1.08991 * 109.47719 * 209.99679 * 1 2 3 33 33 H 1.09004 * 109.47282 * 330.00284 * 1 2 3 34 34 H 1.07995 * 120.00135 * 0.02562 * 3 2 1 35 35 H 1.07999 * 120.00006 * 179.97438 * 4 3 2 36 36 H 1.08005 * 119.99772 * 179.97438 * 5 4 3 37 37 H 1.09002 * 109.47295 * 300.00203 * 9 7 6 38 38 H 1.08999 * 109.47146 * 59.99897 * 9 7 6 39 39 H 1.09001 * 109.47386 * 179.97438 * 9 7 6 40 40 H 0.96993 * 120.00594 * 0.02562 * 12 10 7 41 41 H 1.08996 * 110.30267 * 322.98778 * 15 13 12 42 42 H 1.08998 * 110.38422 * 200.88507 * 15 13 12 43 43 H 1.08999 * 113.49617 * 335.96808 * 18 17 16 44 44 H 1.08994 * 113.55771 * 205.44239 * 18 17 16 45 45 H 0.96994 * 119.99701 * 3.48083 * 23 22 20 46 46 H 1.08991 * 113.50370 * 88.01716 * 28 19 18 47 47 H 1.08999 * 113.49783 * 218.56101 * 28 19 18 48 48 H 1.08992 * 110.93011 * 97.30167 * 29 17 16 49 49 H 1.08996 * 110.93015 * 220.96625 * 29 17 16 50 50 H 1.07997 * 119.99847 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 3.5806 -1.1970 0.0008 7 6 4.3341 -2.5021 0.0014 8 1 3.6257 -3.3306 0.0029 9 6 5.2129 -2.5842 -1.2484 10 6 5.2013 -2.5810 1.2313 11 8 5.2065 -1.6675 2.0291 12 7 5.9709 -3.6667 1.4446 13 6 6.8136 -3.7436 2.6406 14 1 7.2409 -2.7698 2.8801 15 6 6.0232 -4.3176 3.8443 16 8 6.0578 -5.7458 3.6711 17 6 7.1895 -6.1034 2.8845 18 6 8.0773 -7.2110 3.4473 19 7 7.2469 -8.1749 2.7066 20 6 6.9115 -9.4954 2.8441 21 1 7.4231 -10.1097 3.5703 22 6 5.9140 -10.0445 2.0502 23 7 5.8760 -11.3442 1.8462 24 14 4.6255 -8.9387 1.2714 25 1 5.0981 -8.4923 -0.0638 26 1 3.3539 -9.6905 1.1205 27 1 4.4004 -7.7542 2.1382 28 6 6.9403 -7.0991 1.7497 29 6 7.9250 -4.8181 2.4743 30 6 2.1980 -1.1970 -0.0044 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5137 33 1 -0.3634 0.8900 0.5138 34 1 1.6584 2.1326 0.0004 35 1 4.1204 2.1325 -0.0010 36 1 5.3517 -0.0001 -0.0014 37 1 4.5857 -2.5271 -2.1380 38 1 5.9212 -1.7557 -1.2495 39 1 5.7582 -3.5279 -1.2478 40 1 5.9670 -4.3970 0.8064 41 1 4.9940 -3.9593 3.8264 42 1 6.5039 -4.0386 4.7819 43 1 8.0059 -7.3174 4.5297 44 1 9.1078 -7.1645 3.0952 45 1 6.5143 -11.9237 2.2907 46 1 7.6624 -7.0214 0.9370 47 1 5.9085 -7.1108 1.3985 48 1 8.7626 -4.6187 3.1426 49 1 8.2600 -4.8748 1.4386 50 1 1.6580 -2.1323 -0.0083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053941026.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:17 Heat of formation + Delta-G solvation = 8.252179 kcal Electronic energy + Delta-G solvation = -30587.413115 eV Core-core repulsion = 26581.661566 eV Total energy + Delta-G solvation = -4005.751549 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.82236 -40.02701 -38.84956 -36.61372 -34.70416 -34.39742 -32.49824 -32.36026 -30.87691 -29.71006 -28.42680 -27.03374 -25.70989 -25.41672 -25.04607 -22.74277 -22.15625 -21.36843 -20.94357 -19.82705 -19.24493 -17.53941 -17.21842 -16.97897 -16.64058 -15.93737 -15.61863 -15.43344 -15.12253 -14.73990 -14.67228 -14.21650 -13.95091 -13.85222 -13.76427 -13.57023 -13.38090 -13.23262 -12.95604 -12.77976 -12.75489 -12.53741 -12.43414 -11.96853 -11.91711 -11.79771 -11.63721 -11.54463 -11.20249 -11.15393 -11.05627 -10.78071 -10.66037 -10.36410 -9.87253 -9.60523 -9.32530 -9.16069 -8.95306 -8.75505 -8.71971 -8.59649 -7.15983 -6.33626 -3.18413 1.17113 1.25742 2.49888 2.97949 3.37907 3.56137 3.63334 3.71854 3.93319 4.28158 4.33248 4.47247 4.62013 4.67984 4.74749 4.78108 4.82172 4.84449 4.87249 4.94481 4.98876 5.04422 5.15133 5.26489 5.31661 5.34020 5.36035 5.46808 5.49573 5.53340 5.60342 5.68251 5.71549 5.73535 5.79972 5.84806 5.88485 5.96600 6.12879 6.17636 6.26914 6.31181 6.35651 6.39675 6.41353 6.44846 6.45654 6.85100 7.16218 7.35450 7.50640 8.08376 8.27055 8.98161 9.53460 10.40574 11.17751 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014931 B = 0.002837 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.801285 B = 9868.862330 C =10903.418648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.090 4.090 3 C -0.121 4.121 4 C -0.119 4.119 5 C -0.089 4.089 6 C -0.061 4.061 7 C -0.075 4.075 8 H 0.107 0.893 9 C -0.142 4.142 10 C 0.521 3.479 11 O -0.532 6.532 12 N -0.715 5.715 13 C 0.112 3.888 14 H 0.106 0.894 15 C 0.038 3.962 16 O -0.334 6.334 17 C 0.065 3.935 18 C 0.114 3.886 19 N -0.615 5.615 20 C -0.308 4.308 21 H 0.078 0.922 22 C -0.019 4.019 23 N -0.924 5.924 24 Si 1.056 2.944 25 H -0.295 1.295 26 H -0.297 1.297 27 H -0.275 1.275 28 C 0.097 3.903 29 C -0.145 4.145 30 C -0.112 4.112 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.404 0.596 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.262 0.738 46 H 0.051 0.949 47 H 0.052 0.948 48 H 0.095 0.905 49 H 0.091 0.909 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.915 26.103 -6.152 26.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.140 4.140 4 C -0.137 4.137 5 C -0.107 4.107 6 C -0.061 4.061 7 C -0.096 4.096 8 H 0.125 0.875 9 C -0.199 4.199 10 C 0.307 3.693 11 O -0.408 6.408 12 N -0.367 5.367 13 C 0.007 3.993 14 H 0.124 0.876 15 C -0.040 4.040 16 O -0.252 6.252 17 C 0.024 3.976 18 C -0.013 4.013 19 N -0.343 5.343 20 C -0.434 4.434 21 H 0.096 0.904 22 C -0.219 4.219 23 N -0.565 5.565 24 Si 0.888 3.112 25 H -0.223 1.223 26 H -0.224 1.224 27 H -0.202 1.202 28 C -0.028 4.028 29 C -0.184 4.184 30 C -0.130 4.130 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.239 0.761 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.114 0.886 49 H 0.109 0.891 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.446 26.317 -6.428 27.454 hybrid contribution 1.558 -0.363 0.759 1.771 sum -2.889 25.954 -5.669 26.723 Atomic orbital electron populations 1.20779 0.91244 1.02793 1.02209 1.19842 0.95981 0.93059 1.00170 1.20999 0.94275 0.97363 1.01315 1.21074 0.94253 0.97885 1.00525 1.20856 0.99695 0.91745 0.98419 1.19253 0.93203 0.93484 1.00192 1.20330 0.97540 0.97504 0.94257 0.87476 1.21810 0.99433 1.02815 0.95847 1.20458 0.79776 0.81776 0.87245 1.90715 1.65372 1.37800 1.46895 1.45927 1.44802 1.20962 1.25042 1.22574 0.90869 1.00280 0.85603 0.87631 1.23888 1.01301 0.81914 0.96895 1.88477 1.44993 1.20370 1.71384 1.23257 0.87581 0.92506 0.94246 1.22680 0.94095 0.87016 0.97527 1.45666 1.55860 1.07600 1.25158 1.19950 1.18208 0.81626 1.23626 0.90382 1.25731 0.99082 0.98309 0.98815 1.70941 1.41632 1.03427 1.40511 0.83891 0.76806 0.74990 0.75466 1.22292 1.22416 1.20155 1.23059 0.99682 0.87153 0.92945 1.23247 0.97790 0.93522 1.03826 1.20912 0.93223 0.97783 1.01060 0.91269 0.91509 0.91649 0.86358 0.86221 0.86448 0.90992 0.91788 0.91411 0.76065 0.89726 0.91311 0.93049 0.93232 0.92806 0.93171 0.92995 0.88607 0.89085 0.86085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.00 0.36 -0.45 16 2 C -0.09 -0.87 5.88 -104.62 -0.62 -1.49 16 3 C -0.12 -1.14 9.70 -39.58 -0.38 -1.52 16 4 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 5 C -0.09 -0.96 7.93 -39.58 -0.31 -1.28 16 6 C -0.06 -0.66 4.40 -104.63 -0.46 -1.12 16 7 C -0.08 -0.74 2.90 -92.93 -0.27 -1.01 16 8 H 0.11 0.96 7.88 -51.93 -0.41 0.56 16 9 C -0.14 -1.09 8.90 37.16 0.33 -0.76 16 10 C 0.52 6.36 7.02 -10.98 -0.08 6.28 16 11 O -0.53 -8.07 14.86 5.56 0.08 -7.99 16 12 N -0.72 -8.30 5.13 -51.50 -0.26 -8.56 16 13 C 0.11 1.34 3.37 -65.54 -0.22 1.12 16 14 H 0.11 1.19 7.74 -51.93 -0.40 0.79 16 15 C 0.04 0.54 7.49 38.22 0.29 0.83 16 16 O -0.33 -6.33 11.18 -35.23 -0.39 -6.72 16 17 C 0.07 1.13 1.75 -90.43 -0.16 0.97 16 18 C 0.11 2.24 8.20 -8.06 -0.07 2.18 16 19 N -0.62 -15.40 3.56 -184.58 -0.66 -16.05 16 20 C -0.31 -9.07 10.96 -15.06 -0.17 -9.23 16 21 H 0.08 2.42 8.06 -52.48 -0.42 2.00 16 22 C -0.02 -0.59 5.50 -17.43 -0.10 -0.68 16 23 N -0.92 -29.38 13.71 55.49 0.76 -28.62 16 24 Si 1.06 26.98 25.32 -169.99 -4.30 22.68 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 26 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 27 H -0.28 -6.83 6.54 56.52 0.37 -6.46 16 28 C 0.10 2.00 6.67 -7.91 -0.05 1.95 16 29 C -0.14 -1.72 5.97 -25.07 -0.15 -1.87 16 30 C -0.11 -1.16 9.33 -39.58 -0.37 -1.53 16 31 H 0.07 0.43 8.14 -51.92 -0.42 0.00 16 32 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 33 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 34 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.12 1.23 7.52 -52.48 -0.39 0.83 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.49 7.39 -51.93 -0.38 0.10 16 39 H 0.07 0.47 7.56 -51.93 -0.39 0.07 16 40 H 0.40 4.34 8.04 -40.82 -0.33 4.02 16 41 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 45 H 0.26 8.21 8.73 -40.82 -0.36 7.86 16 46 H 0.05 0.93 7.94 -51.93 -0.41 0.52 16 47 H 0.05 1.13 3.72 -51.93 -0.19 0.94 16 48 H 0.10 0.97 8.13 -51.93 -0.42 0.54 16 49 H 0.09 0.95 7.81 -51.93 -0.41 0.54 16 50 H 0.12 1.09 7.95 -52.49 -0.42 0.67 16 LS Contribution 400.14 15.07 6.03 6.03 Total: -1.00 -36.36 400.14 -9.55 -45.91 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -7.99 Total: 2.51 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -2.82 Total: -9.18 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.16 Total: -53.24 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.31 Total: -14.71 kcal Atomic # 14 Polarization: 26.98 SS G_CDS: -4.30 Total: 22.68 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.36 -9.55 -45.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053941026.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.162 kcal (2) G-P(sol) polarization free energy of solvation -36.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds