Wall clock time and date at job start Wed Apr 1 2020 04:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38258 * 120.00249 * 2 1 4 4 C 1.38211 * 119.99987 * 180.02562 * 3 2 1 5 5 C 1.38260 * 120.00162 * 359.97438 * 4 3 2 6 6 C 1.38209 * 119.99985 * 359.96264 * 5 4 3 7 7 C 1.50692 * 120.00004 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.46978 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47079 * 299.99488 * 7 6 5 10 10 C 1.50698 * 109.47411 * 59.99452 * 7 6 5 11 11 O 1.21281 * 119.99714 * 0.02562 * 10 7 6 12 12 N 1.34783 * 119.99779 * 180.02562 * 10 7 6 13 13 C 1.46506 * 119.99529 * 180.02562 * 12 10 7 14 14 H 1.09002 * 110.97335 * 322.30681 * 13 12 10 15 15 C 1.55016 * 111.10460 * 86.45373 * 13 12 10 16 16 O 1.43908 * 105.18072 * 81.91638 * 15 13 12 17 17 C 1.42393 * 109.55697 * 24.29484 * 16 15 13 18 18 C 1.52703 * 116.14400 * 129.84646 * 17 16 15 19 19 N 1.47216 * 87.79328 * 90.69997 * 18 17 16 20 20 C 1.36938 * 135.97080 * 206.45329 * 19 18 17 21 21 H 1.08003 * 120.00145 * 349.92729 * 20 19 18 22 22 C 1.38809 * 120.00264 * 169.91777 * 20 19 18 23 23 N 1.31620 * 120.00026 * 157.66810 * 22 20 19 24 24 Si 1.86799 * 119.99892 * 337.67682 * 22 20 19 25 25 H 1.48504 * 109.47098 * 89.99318 * 24 22 20 26 26 H 1.48494 * 109.47377 * 209.99615 * 24 22 20 27 27 H 1.48499 * 109.47152 * 329.99909 * 24 22 20 28 28 C 1.47206 * 88.05594 * 26.71648 * 19 18 17 29 29 C 1.53658 * 108.53585 * 358.08424 * 17 16 15 30 30 C 1.38219 * 119.99919 * 180.21257 * 2 1 3 31 31 H 1.09008 * 109.47084 * 89.99371 * 1 2 3 32 32 H 1.08991 * 109.47719 * 209.99679 * 1 2 3 33 33 H 1.09004 * 109.47282 * 330.00284 * 1 2 3 34 34 H 1.07995 * 120.00135 * 0.02562 * 3 2 1 35 35 H 1.07999 * 120.00006 * 179.97438 * 4 3 2 36 36 H 1.08005 * 119.99772 * 179.97438 * 5 4 3 37 37 H 1.09002 * 109.47295 * 300.00203 * 9 7 6 38 38 H 1.08999 * 109.47146 * 59.99897 * 9 7 6 39 39 H 1.09001 * 109.47386 * 179.97438 * 9 7 6 40 40 H 0.96993 * 120.00594 * 0.02562 * 12 10 7 41 41 H 1.08996 * 110.30267 * 322.98778 * 15 13 12 42 42 H 1.08998 * 110.38422 * 200.88507 * 15 13 12 43 43 H 1.08999 * 113.49617 * 335.96808 * 18 17 16 44 44 H 1.08994 * 113.55771 * 205.44239 * 18 17 16 45 45 H 0.96994 * 119.99701 * 3.48083 * 23 22 20 46 46 H 1.08991 * 113.50370 * 88.01716 * 28 19 18 47 47 H 1.08999 * 113.49783 * 218.56101 * 28 19 18 48 48 H 1.08992 * 110.93011 * 97.30167 * 29 17 16 49 49 H 1.08996 * 110.93015 * 220.96625 * 29 17 16 50 50 H 1.07997 * 119.99847 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 3.5806 -1.1970 0.0008 7 6 4.3341 -2.5021 0.0014 8 1 3.6257 -3.3306 0.0029 9 6 5.2129 -2.5842 -1.2484 10 6 5.2013 -2.5810 1.2313 11 8 5.2065 -1.6675 2.0291 12 7 5.9709 -3.6667 1.4446 13 6 6.8136 -3.7436 2.6406 14 1 7.2409 -2.7698 2.8801 15 6 6.0232 -4.3176 3.8443 16 8 6.0578 -5.7458 3.6711 17 6 7.1895 -6.1034 2.8845 18 6 8.0773 -7.2110 3.4473 19 7 7.2469 -8.1749 2.7066 20 6 6.9115 -9.4954 2.8441 21 1 7.4231 -10.1097 3.5703 22 6 5.9140 -10.0445 2.0502 23 7 5.8760 -11.3442 1.8462 24 14 4.6255 -8.9387 1.2714 25 1 5.0981 -8.4923 -0.0638 26 1 3.3539 -9.6905 1.1205 27 1 4.4004 -7.7542 2.1382 28 6 6.9403 -7.0991 1.7497 29 6 7.9250 -4.8181 2.4743 30 6 2.1980 -1.1970 -0.0044 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5137 33 1 -0.3634 0.8900 0.5138 34 1 1.6584 2.1326 0.0004 35 1 4.1204 2.1325 -0.0010 36 1 5.3517 -0.0001 -0.0014 37 1 4.5857 -2.5271 -2.1380 38 1 5.9212 -1.7557 -1.2495 39 1 5.7582 -3.5279 -1.2478 40 1 5.9670 -4.3970 0.8064 41 1 4.9940 -3.9593 3.8264 42 1 6.5039 -4.0386 4.7819 43 1 8.0059 -7.3174 4.5297 44 1 9.1078 -7.1645 3.0952 45 1 6.5143 -11.9237 2.2907 46 1 7.6624 -7.0214 0.9370 47 1 5.9085 -7.1108 1.3985 48 1 8.7626 -4.6187 3.1426 49 1 8.2600 -4.8748 1.4386 50 1 1.6580 -2.1323 -0.0083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053941026.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:16 Heat of formation + Delta-G solvation = -16.650273 kcal Electronic energy + Delta-G solvation = -30588.492966 eV Core-core repulsion = 26581.661566 eV Total energy + Delta-G solvation = -4006.831401 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.91607 -41.05803 -39.74637 -38.06803 -35.54518 -35.38442 -34.52756 -33.17764 -31.92700 -30.61626 -29.88298 -27.66395 -27.27917 -26.97977 -25.77821 -23.74157 -23.11124 -22.77999 -21.92724 -20.77087 -20.63042 -19.55826 -18.11639 -18.02097 -17.45824 -17.31202 -16.64752 -16.53114 -16.27674 -15.86251 -15.73113 -15.53144 -15.31642 -15.19302 -14.82170 -14.51082 -14.45818 -14.29089 -14.03704 -13.91452 -13.59076 -13.39991 -13.15443 -13.02294 -12.90118 -12.77023 -12.67874 -12.61933 -12.56472 -12.42203 -12.23526 -11.89606 -11.85219 -11.72719 -11.38516 -11.31276 -10.79149 -10.75323 -10.42631 -9.99947 -9.68223 -9.42993 -9.21480 -8.67437 -5.42952 0.44581 0.53078 1.33875 1.53404 1.59084 1.72281 2.12157 2.51567 2.68288 2.90066 2.94779 3.26694 3.40413 3.53708 3.56302 3.67467 3.74159 3.97404 4.02632 4.08676 4.18809 4.28007 4.30752 4.34420 4.53740 4.54980 4.59060 4.62244 4.64464 4.69386 4.70414 4.74257 4.80145 4.84426 4.89049 4.90669 4.91120 4.95390 4.96717 5.01833 5.19071 5.25115 5.27617 5.33240 5.45240 5.60150 5.69702 5.73093 5.96767 6.15675 6.21879 6.49025 6.69904 7.18900 7.34577 8.31376 8.86126 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014931 B = 0.002837 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.801285 B = 9868.862330 C =10903.418648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.130 4.130 4 C -0.128 4.128 5 C -0.105 4.105 6 C -0.074 4.074 7 C -0.073 4.073 8 H 0.115 0.885 9 C -0.137 4.137 10 C 0.522 3.478 11 O -0.565 6.565 12 N -0.712 5.712 13 C 0.120 3.880 14 H 0.120 0.880 15 C 0.033 3.967 16 O -0.372 6.372 17 C 0.083 3.917 18 C 0.108 3.892 19 N -0.656 5.656 20 C -0.297 4.297 21 H 0.041 0.959 22 C -0.081 4.081 23 N -0.960 5.960 24 Si 1.104 2.896 25 H -0.261 1.261 26 H -0.306 1.306 27 H -0.269 1.269 28 C 0.089 3.911 29 C -0.127 4.127 30 C -0.130 4.130 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.116 0.884 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.410 0.590 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.038 0.962 44 H 0.082 0.918 45 H 0.247 0.753 46 H 0.082 0.918 47 H 0.041 0.959 48 H 0.124 0.876 49 H 0.117 0.883 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.534 29.305 -7.598 30.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.148 4.148 4 C -0.146 4.146 5 C -0.123 4.123 6 C -0.074 4.074 7 C -0.094 4.094 8 H 0.133 0.867 9 C -0.195 4.195 10 C 0.310 3.690 11 O -0.443 6.443 12 N -0.364 5.364 13 C 0.015 3.985 14 H 0.138 0.862 15 C -0.044 4.044 16 O -0.291 6.291 17 C 0.042 3.958 18 C -0.018 4.018 19 N -0.384 5.384 20 C -0.424 4.424 21 H 0.059 0.941 22 C -0.274 4.274 23 N -0.605 5.605 24 Si 0.930 3.070 25 H -0.187 1.187 26 H -0.234 1.234 27 H -0.195 1.195 28 C -0.036 4.036 29 C -0.166 4.166 30 C -0.148 4.148 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.134 0.866 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.246 0.754 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.056 0.944 44 H 0.099 0.901 45 H 0.056 0.944 46 H 0.100 0.900 47 H 0.059 0.941 48 H 0.142 0.858 49 H 0.135 0.865 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.019 29.561 -7.881 30.856 hybrid contribution 1.494 -1.320 1.353 2.409 sum -2.525 28.242 -6.528 29.096 Atomic orbital electron populations 1.20815 0.89674 1.03325 1.03063 1.20194 0.97322 0.92992 0.99473 1.21302 0.94349 0.98225 1.00909 1.21363 0.94772 0.98363 1.00100 1.20971 0.99775 0.92296 0.99299 1.19442 0.93589 0.93947 1.00419 1.20372 0.97561 0.97379 0.94102 0.86731 1.21809 0.99261 1.03425 0.94966 1.20822 0.79517 0.81266 0.87411 1.90700 1.66447 1.39003 1.48136 1.45944 1.44554 1.20944 1.24943 1.22532 0.90428 1.00812 0.84734 0.86182 1.24060 1.01395 0.79955 0.99004 1.88444 1.45897 1.23108 1.71676 1.22964 0.86950 0.93969 0.91932 1.22989 0.95456 0.86680 0.96642 1.45835 1.57181 1.07003 1.28375 1.19814 1.16967 0.83932 1.21712 0.94082 1.27020 1.01159 0.98784 1.00402 1.71041 1.42337 1.04453 1.42643 0.83274 0.73941 0.73318 0.76481 1.18685 1.23398 1.19546 1.23386 0.99770 0.86270 0.94129 1.23234 0.97659 0.89687 1.05979 1.21147 0.93385 0.98582 1.01645 0.90177 0.91437 0.90673 0.84372 0.84585 0.86639 0.90201 0.91825 0.90207 0.75367 0.90921 0.89649 0.94405 0.90080 0.94399 0.90023 0.94063 0.85820 0.86502 0.85317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 10.01 71.23 0.71 -0.70 16 2 C -0.10 -1.79 5.88 -19.87 -0.12 -1.90 16 3 C -0.13 -2.23 9.70 22.27 0.22 -2.01 16 4 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 5 C -0.11 -2.17 7.93 22.27 0.18 -1.99 16 6 C -0.07 -1.51 4.40 -19.87 -0.09 -1.60 16 7 C -0.07 -1.30 2.90 -12.29 -0.04 -1.34 16 8 H 0.11 1.84 7.88 -2.39 -0.02 1.82 16 9 C -0.14 -1.77 8.90 71.98 0.64 -1.13 16 10 C 0.52 11.63 7.02 87.66 0.62 12.25 16 11 O -0.56 -16.28 14.86 -3.03 -0.05 -16.32 16 12 N -0.71 -14.25 5.13 -435.22 -2.23 -16.48 16 13 C 0.12 2.44 3.37 46.54 0.16 2.60 16 14 H 0.12 2.22 7.74 -2.39 -0.02 2.20 16 15 C 0.03 0.87 7.49 72.67 0.54 1.42 16 16 O -0.37 -13.40 11.18 -148.98 -1.67 -15.07 16 17 C 0.08 2.61 1.75 -10.67 -0.02 2.59 16 18 C 0.11 4.04 8.20 83.39 0.68 4.72 16 19 N -0.66 -32.26 3.56 -738.96 -2.63 -34.90 16 20 C -0.30 -17.87 10.96 84.03 0.92 -16.95 16 21 H 0.04 2.69 8.06 -2.91 -0.02 2.66 16 22 C -0.08 -4.95 5.50 84.86 0.47 -4.49 16 23 N -0.96 -63.11 13.71 21.65 0.30 -62.81 16 24 Si 1.10 54.73 25.32 68.60 1.74 56.47 16 25 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 26 H -0.31 -15.45 7.11 99.48 0.71 -14.75 16 27 H -0.27 -12.91 6.54 99.48 0.65 -12.26 16 28 C 0.09 3.39 6.67 83.49 0.56 3.95 16 29 C -0.13 -2.40 5.97 31.67 0.19 -2.21 16 30 C -0.13 -2.55 9.33 22.27 0.21 -2.34 16 31 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 33 H 0.07 0.79 8.09 -2.39 -0.02 0.77 16 34 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 35 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 36 H 0.12 2.32 7.52 -2.91 -0.02 2.29 16 37 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 0.83 7.39 -2.39 -0.02 0.81 16 39 H 0.08 0.83 7.56 -2.39 -0.02 0.81 16 40 H 0.41 7.27 8.04 -92.71 -0.75 6.53 16 41 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 44 H 0.08 2.56 8.13 -2.39 -0.02 2.54 16 45 H 0.25 16.30 8.73 -92.71 -0.81 15.49 16 46 H 0.08 2.64 7.94 -2.39 -0.02 2.62 16 47 H 0.04 1.67 3.72 -2.39 -0.01 1.66 16 48 H 0.12 1.76 8.13 -2.39 -0.02 1.74 16 49 H 0.12 1.70 7.81 -2.39 -0.02 1.68 16 50 H 0.13 2.18 7.95 -2.91 -0.02 2.16 16 Total: -1.00 -82.36 400.14 1.61 -80.75 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.10 Total: 19.62 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 6.05 Total: -11.25 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -4.57 Total: -114.19 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -1.71 Total: -31.39 kcal Atomic # 14 Polarization: 54.73 SS G_CDS: 1.74 Total: 56.47 kcal Total: -82.36 1.61 -80.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053941026.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.098 kcal (2) G-P(sol) polarization free energy of solvation -82.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds