Wall clock time and date at job start Wed Apr 1 2020 04:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38253 * 119.99743 * 2 1 4 4 C 1.38217 * 119.99717 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99816 * 359.79070 * 4 3 2 6 6 C 1.38220 * 120.00109 * 0.48550 * 5 4 3 7 7 C 1.50693 * 120.00109 * 179.76269 * 6 5 4 8 8 H 1.09004 * 109.47391 * 179.72175 * 7 6 5 9 9 C 1.53007 * 109.46858 * 59.72900 * 7 6 5 10 10 C 1.50693 * 109.47501 * 299.72759 * 7 6 5 11 11 O 1.21283 * 119.99889 * 0.02562 * 10 7 6 12 12 N 1.34779 * 120.00157 * 179.97438 * 10 7 6 13 13 C 1.46506 * 119.99618 * 180.02562 * 12 10 7 14 14 H 1.08996 * 110.97526 * 322.30474 * 13 12 10 15 15 C 1.55015 * 111.10622 * 86.45867 * 13 12 10 16 16 O 1.43910 * 105.18412 * 81.91033 * 15 13 12 17 17 C 1.42399 * 109.55678 * 24.29704 * 16 15 13 18 18 C 1.52694 * 116.14170 * 129.84240 * 17 16 15 19 19 N 1.47210 * 87.79470 * 90.70390 * 18 17 16 20 20 C 1.36942 * 135.97402 * 206.45750 * 19 18 17 21 21 H 1.08004 * 119.99722 * 8.61364 * 20 19 18 22 22 C 1.38811 * 120.00218 * 188.61050 * 20 19 18 23 23 N 1.31615 * 119.99810 * 18.60401 * 22 20 19 24 24 Si 1.86799 * 119.99893 * 198.59977 * 22 20 19 25 25 H 1.48500 * 109.47153 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46640 * 120.00259 * 24 22 20 27 27 H 1.48493 * 109.47359 * 240.00215 * 24 22 20 28 28 C 1.47204 * 88.05516 * 26.71010 * 19 18 17 29 29 C 1.53659 * 108.53108 * 358.08215 * 17 16 15 30 30 C 1.38212 * 119.99613 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47346 * 269.97815 * 1 2 3 32 32 H 1.09004 * 109.47273 * 29.97514 * 1 2 3 33 33 H 1.09004 * 109.47338 * 149.97893 * 1 2 3 34 34 H 1.08000 * 120.00740 * 359.97438 * 3 2 1 35 35 H 1.08002 * 120.00282 * 180.02562 * 4 3 2 36 36 H 1.08000 * 119.99854 * 180.24935 * 5 4 3 37 37 H 1.08998 * 109.47372 * 59.99979 * 9 7 6 38 38 H 1.09005 * 109.47083 * 179.97438 * 9 7 6 39 39 H 1.09005 * 109.46978 * 299.99529 * 9 7 6 40 40 H 0.96995 * 120.00319 * 0.02562 * 12 10 7 41 41 H 1.08997 * 110.29953 * 322.98233 * 15 13 12 42 42 H 1.09002 * 110.38402 * 200.88164 * 15 13 12 43 43 H 1.09003 * 113.50017 * 335.96722 * 18 17 16 44 44 H 1.09004 * 113.55444 * 205.44049 * 18 17 16 45 45 H 0.97000 * 120.00422 * 5.69649 * 23 22 20 46 46 H 1.09003 * 113.49910 * 88.02387 * 28 19 18 47 47 H 1.09002 * 113.49967 * 218.55767 * 28 19 18 48 48 H 1.09005 * 110.93261 * 97.30295 * 29 17 16 49 49 H 1.09007 * 110.93078 * 220.96330 * 29 17 16 50 50 H 1.08001 * 120.00172 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0054 6 6 3.5806 -1.1971 -0.0003 7 6 4.3340 -2.5021 -0.0004 8 1 3.6257 -3.3306 -0.0003 9 6 5.2136 -2.5832 1.2490 10 6 5.2004 -2.5820 -1.2307 11 8 5.2060 -1.6687 -2.0288 12 7 5.9700 -3.6678 -1.4438 13 6 6.8127 -3.7450 -2.6397 14 1 6.3071 -3.3106 -3.5020 15 6 8.1867 -3.0688 -2.3990 16 8 8.9799 -4.0585 -1.7190 17 6 8.4814 -5.3580 -2.0200 18 6 9.5127 -6.3828 -2.4866 19 7 9.6859 -6.7663 -1.0759 20 6 10.6882 -7.3138 -0.3203 21 1 11.6754 -7.4372 -0.7406 22 6 10.4354 -7.7101 0.9858 23 7 9.1972 -7.9087 1.3852 24 14 11.8527 -7.9616 2.1764 25 1 13.1359 -7.6749 1.4861 26 1 11.6969 -7.0426 3.3324 27 1 11.8519 -9.3665 2.6572 28 6 8.3075 -6.3095 -0.8346 29 6 7.2478 -5.2105 -2.9242 30 6 2.1980 -1.1970 -0.0005 31 1 -0.3634 -0.0004 1.0277 32 1 -0.3634 0.8902 -0.5135 33 1 -0.3634 -0.8898 -0.5142 34 1 1.6583 2.1327 -0.0004 35 1 4.1205 2.1326 0.0010 36 1 5.3516 0.0000 0.0099 37 1 4.5869 -2.5255 2.1389 38 1 5.7583 -3.5274 1.2492 39 1 5.9220 -1.7547 1.2490 40 1 5.9659 -4.3980 -0.8053 41 1 8.0683 -2.1840 -1.7736 42 1 8.6494 -2.8006 -3.3488 43 1 10.4028 -5.9339 -2.9275 44 1 9.0904 -7.1758 -3.1039 45 1 8.4680 -7.8591 0.7476 46 1 7.5576 -7.0823 -1.0040 47 1 8.1797 -5.7988 0.1198 48 1 7.5157 -5.3405 -3.9728 49 1 6.4659 -5.9122 -2.6336 50 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053941027.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:21 Heat of formation + Delta-G solvation = -0.321709 kcal Electronic energy + Delta-G solvation = -30424.781253 eV Core-core repulsion = 26418.657912 eV Total energy + Delta-G solvation = -4006.123341 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.74742 -39.94353 -38.78860 -36.54846 -34.63381 -34.33802 -32.46336 -32.32241 -30.77151 -29.57989 -28.08814 -27.00608 -25.69383 -25.04664 -24.86116 -22.71095 -22.18726 -21.75885 -20.89862 -19.76470 -19.13354 -17.43273 -17.17376 -16.96787 -16.51578 -15.68900 -15.49494 -15.23608 -14.95875 -14.55352 -14.51144 -14.10176 -13.88859 -13.77906 -13.60759 -13.52231 -13.48099 -13.20258 -13.03381 -12.83573 -12.50493 -12.44364 -12.35980 -11.94815 -11.79420 -11.69206 -11.55264 -11.50869 -11.11587 -11.00946 -10.79087 -10.71104 -10.55601 -10.09812 -10.04371 -9.78655 -9.40415 -9.21333 -8.91852 -8.74264 -8.68173 -8.64350 -7.03020 -6.12436 -3.12838 1.21206 1.29329 2.55410 3.05206 3.50199 3.55822 3.66914 3.67950 4.00751 4.35007 4.37673 4.53228 4.57024 4.71160 4.82603 4.87541 4.91869 4.93601 4.98449 5.04844 5.08604 5.15842 5.18165 5.32147 5.35331 5.38350 5.44876 5.49824 5.57607 5.61934 5.65322 5.74309 5.76886 5.80284 5.89373 5.91701 5.97665 6.02576 6.23935 6.33099 6.36011 6.39467 6.42735 6.46972 6.50546 6.62006 6.65878 6.88961 7.27877 7.43312 7.59746 8.14823 8.31388 8.91493 9.76048 10.48808 11.29102 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016296 B = 0.002459 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.782017 B =11383.201950 C =12205.215282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.092 4.092 3 C -0.122 4.122 4 C -0.118 4.118 5 C -0.088 4.088 6 C -0.060 4.060 7 C -0.072 4.072 8 H 0.105 0.895 9 C -0.144 4.144 10 C 0.521 3.479 11 O -0.534 6.534 12 N -0.713 5.713 13 C 0.113 3.887 14 H 0.104 0.896 15 C 0.040 3.960 16 O -0.335 6.335 17 C 0.063 3.937 18 C 0.111 3.889 19 N -0.608 5.608 20 C -0.308 4.308 21 H 0.074 0.926 22 C -0.034 4.034 23 N -0.934 5.934 24 Si 1.080 2.920 25 H -0.293 1.293 26 H -0.290 1.290 27 H -0.294 1.294 28 C 0.130 3.870 29 C -0.145 4.145 30 C -0.113 4.113 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.406 0.594 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.049 0.951 44 H 0.042 0.958 45 H 0.264 0.736 46 H 0.042 0.958 47 H 0.056 0.944 48 H 0.093 0.907 49 H 0.089 0.911 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.431 14.464 -4.991 22.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.140 4.140 4 C -0.136 4.136 5 C -0.106 4.106 6 C -0.061 4.061 7 C -0.093 4.093 8 H 0.123 0.877 9 C -0.201 4.201 10 C 0.307 3.693 11 O -0.411 6.411 12 N -0.365 5.365 13 C 0.007 3.993 14 H 0.122 0.878 15 C -0.038 4.038 16 O -0.253 6.253 17 C 0.022 3.978 18 C -0.016 4.016 19 N -0.334 5.334 20 C -0.435 4.435 21 H 0.092 0.908 22 C -0.233 4.233 23 N -0.578 5.578 24 Si 0.910 3.090 25 H -0.219 1.219 26 H -0.216 1.216 27 H -0.221 1.221 28 C 0.004 3.996 29 C -0.183 4.183 30 C -0.131 4.131 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.241 0.759 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.075 0.925 46 H 0.059 0.941 47 H 0.075 0.925 48 H 0.111 0.889 49 H 0.108 0.892 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.602 14.686 -3.711 21.746 hybrid contribution -0.464 -0.220 -1.561 1.643 sum -16.065 14.466 -5.272 22.252 Atomic orbital electron populations 1.20769 0.91317 1.02650 1.02171 1.19822 0.95899 0.93097 1.00425 1.20992 0.94268 0.97339 1.01397 1.21091 0.94241 0.97939 1.00364 1.20904 0.99869 0.91763 0.98093 1.19280 0.93176 0.93587 1.00012 1.20307 0.97401 0.97206 0.94393 0.87735 1.21831 0.99367 1.03390 0.95524 1.20475 0.79737 0.81882 0.87196 1.90710 1.66314 1.37352 1.46683 1.45917 1.43988 1.21317 1.25304 1.22554 0.91508 0.96523 0.88684 0.87809 1.23855 0.89550 0.92698 0.97744 1.88451 1.53849 1.13296 1.69721 1.23287 0.92700 0.84926 0.96918 1.22691 0.96178 0.93184 0.89516 1.45697 1.10683 1.73774 1.03280 1.19822 0.88644 1.38663 0.96399 0.90791 1.25799 1.02316 0.98473 0.96694 1.70720 0.99411 1.49500 1.38121 0.83282 0.73733 0.76311 0.75663 1.21886 1.21631 1.22103 1.22563 0.88746 0.92155 0.96151 1.23229 0.98404 0.95228 1.01488 1.20863 0.93165 0.97640 1.01390 0.91304 0.91691 0.91645 0.86384 0.86178 0.86340 0.91051 0.91059 0.91714 0.75897 0.89832 0.91531 0.93303 0.94067 0.92503 0.94097 0.92536 0.88877 0.89214 0.86227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.01 0.36 -0.42 16 2 C -0.09 -0.90 5.88 -104.62 -0.62 -1.51 16 3 C -0.12 -1.19 9.70 -39.58 -0.38 -1.57 16 4 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 5 C -0.09 -1.05 7.94 -39.58 -0.31 -1.36 16 6 C -0.06 -0.69 4.39 -104.63 -0.46 -1.15 16 7 C -0.07 -0.76 2.90 -92.93 -0.27 -1.03 16 8 H 0.10 0.90 7.88 -51.93 -0.41 0.49 16 9 C -0.14 -1.46 8.90 37.16 0.33 -1.13 16 10 C 0.52 6.70 7.03 -10.99 -0.08 6.63 16 11 O -0.53 -8.44 14.88 5.56 0.08 -8.36 16 12 N -0.71 -8.80 5.13 -51.50 -0.26 -9.06 16 13 C 0.11 1.44 3.37 -65.54 -0.22 1.22 16 14 H 0.10 1.27 7.74 -51.93 -0.40 0.87 16 15 C 0.04 0.58 7.49 38.22 0.29 0.87 16 16 O -0.33 -6.44 11.18 -35.23 -0.39 -6.84 16 17 C 0.06 1.14 1.75 -90.44 -0.16 0.98 16 18 C 0.11 2.30 8.20 -8.08 -0.07 2.23 16 19 N -0.61 -15.84 3.69 -184.62 -0.68 -16.52 16 20 C -0.31 -8.97 10.65 -15.06 -0.16 -9.13 16 21 H 0.07 2.13 7.90 -52.48 -0.41 1.72 16 22 C -0.03 -0.99 5.45 -17.43 -0.09 -1.08 16 23 N -0.93 -28.53 13.34 55.49 0.74 -27.79 16 24 Si 1.08 26.06 29.96 -169.99 -5.09 20.97 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 28 C 0.13 2.88 5.65 -7.93 -0.04 2.83 16 29 C -0.14 -1.88 5.97 -25.07 -0.15 -2.03 16 30 C -0.11 -1.16 9.33 -39.58 -0.37 -1.53 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 33 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 34 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.12 1.43 7.52 -52.49 -0.39 1.04 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.74 7.56 -51.93 -0.39 0.35 16 39 H 0.06 0.70 7.37 -51.93 -0.38 0.31 16 40 H 0.41 4.77 8.04 -40.82 -0.33 4.44 16 41 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.04 0.79 8.13 -51.93 -0.42 0.37 16 45 H 0.26 7.88 5.92 -40.82 -0.24 7.64 16 46 H 0.04 0.87 7.76 -51.93 -0.40 0.47 16 47 H 0.06 1.37 7.99 -51.93 -0.41 0.96 16 48 H 0.09 1.05 8.13 -51.93 -0.42 0.63 16 49 H 0.09 1.07 7.81 -51.93 -0.41 0.67 16 50 H 0.12 1.01 7.95 -52.49 -0.42 0.60 16 LS Contribution 404.84 15.07 6.10 6.10 Total: -1.00 -35.65 404.84 -10.36 -46.00 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -8.04 Total: 4.32 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -2.80 Total: -8.83 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: -0.20 Total: -53.37 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.31 Total: -15.20 kcal Atomic # 14 Polarization: 26.06 SS G_CDS: -5.09 Total: 20.97 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.65 -10.36 -46.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053941027.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.681 kcal (2) G-P(sol) polarization free energy of solvation -35.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds