Wall clock time and date at job start Wed Apr 1 2020 04:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38253 * 119.99743 * 2 1 4 4 C 1.38217 * 119.99717 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99816 * 359.79070 * 4 3 2 6 6 C 1.38220 * 120.00109 * 0.48550 * 5 4 3 7 7 C 1.50693 * 120.00109 * 179.76269 * 6 5 4 8 8 H 1.09004 * 109.47391 * 179.72175 * 7 6 5 9 9 C 1.53007 * 109.46858 * 59.72900 * 7 6 5 10 10 C 1.50693 * 109.47501 * 299.72759 * 7 6 5 11 11 O 1.21283 * 119.99889 * 0.02562 * 10 7 6 12 12 N 1.34779 * 120.00157 * 179.97438 * 10 7 6 13 13 C 1.46506 * 119.99618 * 180.02562 * 12 10 7 14 14 H 1.08996 * 110.97526 * 322.30474 * 13 12 10 15 15 C 1.55015 * 111.10622 * 86.45867 * 13 12 10 16 16 O 1.43910 * 105.18412 * 81.91033 * 15 13 12 17 17 C 1.42399 * 109.55678 * 24.29704 * 16 15 13 18 18 C 1.52694 * 116.14170 * 129.84240 * 17 16 15 19 19 N 1.47210 * 87.79470 * 90.70390 * 18 17 16 20 20 C 1.36942 * 135.97402 * 206.45750 * 19 18 17 21 21 H 1.08004 * 119.99722 * 8.61364 * 20 19 18 22 22 C 1.38811 * 120.00218 * 188.61050 * 20 19 18 23 23 N 1.31615 * 119.99810 * 18.60401 * 22 20 19 24 24 Si 1.86799 * 119.99893 * 198.59977 * 22 20 19 25 25 H 1.48500 * 109.47153 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46640 * 120.00259 * 24 22 20 27 27 H 1.48493 * 109.47359 * 240.00215 * 24 22 20 28 28 C 1.47204 * 88.05516 * 26.71010 * 19 18 17 29 29 C 1.53659 * 108.53108 * 358.08215 * 17 16 15 30 30 C 1.38212 * 119.99613 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47346 * 269.97815 * 1 2 3 32 32 H 1.09004 * 109.47273 * 29.97514 * 1 2 3 33 33 H 1.09004 * 109.47338 * 149.97893 * 1 2 3 34 34 H 1.08000 * 120.00740 * 359.97438 * 3 2 1 35 35 H 1.08002 * 120.00282 * 180.02562 * 4 3 2 36 36 H 1.08000 * 119.99854 * 180.24935 * 5 4 3 37 37 H 1.08998 * 109.47372 * 59.99979 * 9 7 6 38 38 H 1.09005 * 109.47083 * 179.97438 * 9 7 6 39 39 H 1.09005 * 109.46978 * 299.99529 * 9 7 6 40 40 H 0.96995 * 120.00319 * 0.02562 * 12 10 7 41 41 H 1.08997 * 110.29953 * 322.98233 * 15 13 12 42 42 H 1.09002 * 110.38402 * 200.88164 * 15 13 12 43 43 H 1.09003 * 113.50017 * 335.96722 * 18 17 16 44 44 H 1.09004 * 113.55444 * 205.44049 * 18 17 16 45 45 H 0.97000 * 120.00422 * 5.69649 * 23 22 20 46 46 H 1.09003 * 113.49910 * 88.02387 * 28 19 18 47 47 H 1.09002 * 113.49967 * 218.55767 * 28 19 18 48 48 H 1.09005 * 110.93261 * 97.30295 * 29 17 16 49 49 H 1.09007 * 110.93078 * 220.96330 * 29 17 16 50 50 H 1.08001 * 120.00172 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0054 6 6 3.5806 -1.1971 -0.0003 7 6 4.3340 -2.5021 -0.0004 8 1 3.6257 -3.3306 -0.0003 9 6 5.2136 -2.5832 1.2490 10 6 5.2004 -2.5820 -1.2307 11 8 5.2060 -1.6687 -2.0288 12 7 5.9700 -3.6678 -1.4438 13 6 6.8127 -3.7450 -2.6397 14 1 6.3071 -3.3106 -3.5020 15 6 8.1867 -3.0688 -2.3990 16 8 8.9799 -4.0585 -1.7190 17 6 8.4814 -5.3580 -2.0200 18 6 9.5127 -6.3828 -2.4866 19 7 9.6859 -6.7663 -1.0759 20 6 10.6882 -7.3138 -0.3203 21 1 11.6754 -7.4372 -0.7406 22 6 10.4354 -7.7101 0.9858 23 7 9.1972 -7.9087 1.3852 24 14 11.8527 -7.9616 2.1764 25 1 13.1359 -7.6749 1.4861 26 1 11.6969 -7.0426 3.3324 27 1 11.8519 -9.3665 2.6572 28 6 8.3075 -6.3095 -0.8346 29 6 7.2478 -5.2105 -2.9242 30 6 2.1980 -1.1970 -0.0005 31 1 -0.3634 -0.0004 1.0277 32 1 -0.3634 0.8902 -0.5135 33 1 -0.3634 -0.8898 -0.5142 34 1 1.6583 2.1327 -0.0004 35 1 4.1205 2.1326 0.0010 36 1 5.3516 0.0000 0.0099 37 1 4.5869 -2.5255 2.1389 38 1 5.7583 -3.5274 1.2492 39 1 5.9220 -1.7547 1.2490 40 1 5.9659 -4.3980 -0.8053 41 1 8.0683 -2.1840 -1.7736 42 1 8.6494 -2.8006 -3.3488 43 1 10.4028 -5.9339 -2.9275 44 1 9.0904 -7.1758 -3.1039 45 1 8.4680 -7.8591 0.7476 46 1 7.5576 -7.0823 -1.0040 47 1 8.1797 -5.7988 0.1198 48 1 7.5157 -5.3405 -3.9728 49 1 6.4659 -5.9122 -2.6336 50 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053941027.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:20 Heat of formation + Delta-G solvation = -23.024745 kcal Electronic energy + Delta-G solvation = -30425.765730 eV Core-core repulsion = 26418.657912 eV Total energy + Delta-G solvation = -4007.107818 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.92936 -41.07133 -39.76631 -38.10579 -35.57775 -35.42604 -34.37515 -33.19628 -31.88620 -30.51545 -29.68570 -27.66332 -27.37671 -26.69929 -25.81371 -24.00067 -23.36066 -22.86856 -21.94832 -20.73963 -20.59392 -19.44345 -18.15084 -18.01324 -17.41859 -16.85339 -16.52361 -16.46178 -16.33004 -15.91386 -15.76301 -15.49722 -15.26076 -15.13522 -15.01172 -14.58254 -14.42588 -14.37432 -14.00075 -13.92173 -13.51812 -13.31451 -13.23211 -13.02468 -12.85333 -12.68579 -12.64384 -12.60479 -12.49531 -12.45060 -12.14906 -11.90255 -11.88612 -11.82014 -11.75498 -11.32085 -10.82705 -10.73027 -10.53022 -10.03991 -9.70054 -9.45102 -9.09611 -8.38616 -5.33424 0.42412 0.51384 1.54111 1.54414 1.64863 1.79055 2.09370 2.57682 2.67915 2.88260 3.19459 3.25888 3.40885 3.50664 3.53056 3.65851 3.72309 3.94464 3.98343 4.06079 4.14332 4.23312 4.27947 4.29623 4.53604 4.55515 4.56512 4.59530 4.63191 4.65537 4.67997 4.71240 4.81543 4.82913 4.83818 4.85815 4.86755 4.92294 5.00006 5.00456 5.15580 5.19257 5.32370 5.32623 5.40907 5.58032 5.68382 5.71271 6.12946 6.14037 6.20450 6.44277 6.72661 7.14174 7.59598 8.43003 9.05939 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016296 B = 0.002459 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.782017 B =11383.201950 C =12205.215282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.098 4.098 3 C -0.128 4.128 4 C -0.129 4.129 5 C -0.111 4.111 6 C -0.074 4.074 7 C -0.066 4.066 8 H 0.128 0.872 9 C -0.139 4.139 10 C 0.522 3.478 11 O -0.564 6.564 12 N -0.711 5.711 13 C 0.120 3.880 14 H 0.120 0.880 15 C 0.036 3.964 16 O -0.370 6.370 17 C 0.086 3.914 18 C 0.107 3.893 19 N -0.649 5.649 20 C -0.321 4.321 21 H 0.066 0.934 22 C -0.089 4.089 23 N -0.962 5.962 24 Si 1.127 2.873 25 H -0.275 1.275 26 H -0.289 1.289 27 H -0.285 1.285 28 C 0.131 3.869 29 C -0.129 4.129 30 C -0.122 4.122 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.140 0.860 35 H 0.132 0.868 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.408 0.592 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.044 0.956 44 H 0.067 0.933 45 H 0.256 0.744 46 H 0.052 0.948 47 H 0.022 0.978 48 H 0.123 0.877 49 H 0.107 0.893 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.142 14.807 -6.020 24.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.098 4.098 3 C -0.146 4.146 4 C -0.147 4.147 5 C -0.129 4.129 6 C -0.074 4.074 7 C -0.087 4.087 8 H 0.146 0.854 9 C -0.197 4.197 10 C 0.309 3.691 11 O -0.443 6.443 12 N -0.363 5.363 13 C 0.015 3.985 14 H 0.138 0.862 15 C -0.041 4.041 16 O -0.289 6.289 17 C 0.045 3.955 18 C -0.018 4.018 19 N -0.376 5.376 20 C -0.448 4.448 21 H 0.084 0.916 22 C -0.282 4.282 23 N -0.607 5.607 24 Si 0.951 3.049 25 H -0.200 1.200 26 H -0.215 1.215 27 H -0.212 1.212 28 C 0.005 3.995 29 C -0.167 4.167 30 C -0.140 4.140 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.158 0.842 35 H 0.150 0.850 36 H 0.122 0.878 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.244 0.756 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.062 0.938 44 H 0.085 0.915 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.041 0.959 48 H 0.142 0.858 49 H 0.125 0.875 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.324 15.036 -4.777 23.431 hybrid contribution 0.068 -0.242 -1.297 1.321 sum -17.255 14.794 -6.074 23.527 Atomic orbital electron populations 1.20816 0.89250 1.03543 1.03107 1.20224 0.97513 0.92821 0.99232 1.21308 0.94005 0.98522 1.00786 1.21330 0.95039 0.98065 1.00305 1.20950 0.99405 0.92842 0.99718 1.19420 0.93893 0.93518 1.00573 1.20315 0.97348 0.97921 0.93109 0.85437 1.21787 0.99284 1.02463 0.96136 1.20843 0.79543 0.81282 0.87408 1.90692 1.67357 1.38324 1.47905 1.45957 1.43653 1.21336 1.25331 1.22528 0.90565 0.96152 0.89257 0.86235 1.24039 0.90552 0.91516 0.98040 1.88419 1.55287 1.14390 1.70795 1.22914 0.93732 0.83748 0.95080 1.22927 0.97054 0.94444 0.87412 1.46050 1.11757 1.73852 1.05974 1.20075 0.89530 1.37923 0.97300 0.91643 1.27178 1.03823 0.98591 0.98608 1.70810 0.99976 1.51753 1.38142 0.82678 0.71832 0.76525 0.73857 1.20015 1.21545 1.21210 1.22641 0.87282 0.93198 0.96368 1.23211 0.96053 0.95568 1.01881 1.21142 0.92819 0.98860 1.01205 0.90233 0.90674 0.90930 0.84222 0.84983 0.87786 0.89762 0.91614 0.93007 0.75562 0.90786 0.89468 0.93809 0.91511 0.93354 0.93055 0.95915 0.85839 0.87479 0.84433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.01 71.24 0.71 -0.54 16 2 C -0.10 -1.72 5.88 -19.87 -0.12 -1.84 16 3 C -0.13 -2.32 9.70 22.27 0.22 -2.10 16 4 C -0.13 -2.70 10.05 22.27 0.22 -2.48 16 5 C -0.11 -2.68 7.94 22.27 0.18 -2.50 16 6 C -0.07 -1.64 4.39 -19.87 -0.09 -1.73 16 7 C -0.07 -1.35 2.90 -12.29 -0.04 -1.38 16 8 H 0.13 1.98 7.88 -2.39 -0.02 1.96 16 9 C -0.14 -2.84 8.90 71.98 0.64 -2.20 16 10 C 0.52 13.08 7.03 87.65 0.62 13.70 16 11 O -0.56 -17.59 14.88 -3.04 -0.05 -17.64 16 12 N -0.71 -16.72 5.13 -435.23 -2.23 -18.96 16 13 C 0.12 2.82 3.37 46.54 0.16 2.97 16 14 H 0.12 2.55 7.74 -2.39 -0.02 2.54 16 15 C 0.04 1.01 7.49 72.67 0.54 1.56 16 16 O -0.37 -14.13 11.18 -148.98 -1.67 -15.80 16 17 C 0.09 3.03 1.75 -10.67 -0.02 3.01 16 18 C 0.11 4.33 8.20 83.38 0.68 5.02 16 19 N -0.65 -34.23 3.69 -739.10 -2.73 -36.96 16 20 C -0.32 -19.00 10.65 84.03 0.89 -18.11 16 21 H 0.07 3.85 7.90 -2.91 -0.02 3.83 16 22 C -0.09 -5.26 5.45 84.86 0.46 -4.79 16 23 N -0.96 -59.95 13.34 21.65 0.29 -59.66 16 24 Si 1.13 53.14 29.96 68.60 2.06 55.20 16 25 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 26 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 27 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 28 C 0.13 5.83 5.65 83.48 0.47 6.30 16 29 C -0.13 -2.95 5.97 31.67 0.19 -2.77 16 30 C -0.12 -2.35 9.33 22.27 0.21 -2.14 16 31 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.70 8.09 -2.38 -0.02 0.68 16 33 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16 34 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 35 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 36 H 0.10 2.70 7.52 -2.91 -0.02 2.67 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.06 1.40 7.56 -2.38 -0.02 1.38 16 39 H 0.05 1.17 7.37 -2.38 -0.02 1.15 16 40 H 0.41 9.25 8.04 -92.71 -0.75 8.51 16 41 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.07 2.40 8.13 -2.38 -0.02 2.38 16 45 H 0.26 15.72 5.92 -92.71 -0.55 15.17 16 46 H 0.05 2.17 7.76 -2.39 -0.02 2.15 16 47 H 0.02 1.14 7.99 -2.39 -0.02 1.12 16 48 H 0.12 2.20 8.13 -2.38 -0.02 2.18 16 49 H 0.11 2.17 7.81 -2.38 -0.02 2.15 16 50 H 0.14 2.03 7.95 -2.91 -0.02 2.00 16 Total: -1.00 -79.29 404.84 2.02 -77.27 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.41 Total: 26.57 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: 5.94 Total: -10.02 kcal Atomic # 7 Polarization: -110.91 SS G_CDS: -4.67 Total: -115.58 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -1.71 Total: -33.44 kcal Atomic # 14 Polarization: 53.14 SS G_CDS: 2.06 Total: 55.20 kcal Total: -79.29 2.02 -77.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053941027.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.248 kcal (2) G-P(sol) polarization free energy of solvation -79.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds