Wall clock time and date at job start Wed Apr 1 2020 04:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38235 * 119.99621 * 2 1 4 4 C 1.38236 * 119.99385 * 180.02562 * 3 2 1 5 5 C 1.38228 * 120.00644 * 359.95300 * 4 3 2 6 6 C 1.50702 * 120.00516 * 180.02562 * 5 4 3 7 7 H 1.09009 * 109.46568 * 0.02562 * 6 5 4 8 8 C 1.52994 * 109.47257 * 119.99794 * 6 5 4 9 9 C 1.50701 * 109.47124 * 240.00292 * 6 5 4 10 10 O 1.21277 * 119.99995 * 359.97438 * 9 6 5 11 11 N 1.34775 * 119.99828 * 179.97438 * 9 6 5 12 12 C 1.46500 * 120.00268 * 179.97438 * 11 9 6 13 13 H 1.09002 * 110.77176 * 328.53881 * 12 11 9 14 14 C 1.55062 * 111.04582 * 92.19081 * 12 11 9 15 15 O 1.44602 * 103.66786 * 81.72388 * 14 12 11 16 16 C 1.42834 * 106.73516 * 39.08121 * 15 14 12 17 17 C 1.52649 * 115.96086 * 202.48652 * 16 15 14 18 18 N 1.47224 * 87.78425 * 218.40776 * 17 16 15 19 19 C 1.36935 * 135.96655 * 206.41687 * 18 17 16 20 20 H 1.07995 * 120.00083 * 6.48200 * 19 18 17 21 21 C 1.38817 * 119.99741 * 186.48533 * 19 18 17 22 22 N 1.31620 * 119.99762 * 6.40711 * 21 19 18 23 23 Si 1.86796 * 119.99659 * 186.41024 * 21 19 18 24 24 H 1.48494 * 109.47314 * 84.99017 * 23 21 19 25 25 H 1.48507 * 109.46943 * 204.98927 * 23 21 19 26 26 H 1.48495 * 109.47489 * 324.98593 * 23 21 19 27 27 C 1.47222 * 88.06547 * 26.67283 * 18 17 16 28 28 C 1.53320 * 108.33238 * 334.31616 * 16 15 14 29 29 C 1.38238 * 119.99580 * 0.27452 * 5 4 3 30 30 C 1.38230 * 120.00098 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.46971 * 90.00965 * 1 2 3 32 32 H 1.09000 * 109.47037 * 210.00154 * 1 2 3 33 33 H 1.08990 * 109.47405 * 330.00269 * 1 2 3 34 34 H 1.07991 * 120.00049 * 359.97438 * 3 2 1 35 35 H 1.08004 * 119.99183 * 179.97438 * 4 3 2 36 36 H 1.09002 * 109.47168 * 180.02562 * 8 6 5 37 37 H 1.09006 * 109.47182 * 300.00393 * 8 6 5 38 38 H 1.09004 * 109.46962 * 60.00156 * 8 6 5 39 39 H 0.96998 * 119.99811 * 0.02562 * 11 9 6 40 40 H 1.09000 * 110.58348 * 200.27652 * 14 12 11 41 41 H 1.09003 * 110.58393 * 323.17471 * 14 12 11 42 42 H 1.09001 * 113.50032 * 103.67854 * 17 16 15 43 43 H 1.09000 * 113.50173 * 333.14182 * 17 16 15 44 44 H 0.96999 * 119.99603 * 179.97438 * 22 21 19 45 45 H 1.08997 * 113.50605 * 88.05400 * 27 18 17 46 46 H 1.08996 * 113.50269 * 218.60592 * 27 18 17 47 47 H 1.09004 * 110.56376 * 120.17683 * 28 16 15 48 48 H 1.08997 * 110.56344 * 242.88280 * 28 16 15 49 49 H 1.07999 * 119.99874 * 179.72398 * 29 5 4 50 50 H 1.08006 * 120.00070 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 0.0001 -0.0001 6 6 5.7787 0.0001 -0.0001 7 1 6.1420 1.0278 0.0000 8 6 6.2887 -0.7206 1.2494 9 6 6.2811 -0.7107 -1.2303 10 8 5.4930 -1.1723 -2.0283 11 7 7.6061 -0.8335 -1.4438 12 6 8.0945 -1.5250 -2.6394 13 1 7.4041 -2.3134 -2.9392 14 6 8.3317 -0.5268 -3.8021 15 8 9.6335 0.0320 -3.5126 16 6 10.4407 -1.0389 -3.0210 17 6 11.6399 -0.6345 -2.1674 18 7 12.3978 -1.7132 -2.8227 19 6 13.4680 -2.5028 -2.4969 20 1 13.8875 -2.4604 -1.5027 21 6 14.0137 -3.3578 -3.4446 22 7 13.5865 -3.3196 -4.6890 23 14 15.3541 -4.5626 -2.9538 24 1 14.7347 -5.7958 -2.4053 25 1 16.1709 -4.9068 -4.1453 26 1 16.2225 -3.9432 -1.9206 27 6 11.5052 -1.5667 -3.9844 28 6 9.5166 -2.0959 -2.4051 29 6 3.5805 -1.1971 -0.0048 30 6 2.1982 -1.1971 -0.0005 31 1 -0.3633 -0.0002 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8899 0.5137 34 1 1.6581 2.1324 -0.0004 35 1 4.1204 2.1325 -0.0010 36 1 7.3788 -0.7203 1.2496 37 1 5.9254 -0.2065 2.1392 38 1 5.9254 -1.7483 1.2498 39 1 8.2364 -0.4647 -0.8054 40 1 8.3427 -1.0487 -4.7590 41 1 7.5703 0.2532 -3.7988 42 1 11.4880 -0.7963 -1.1002 43 1 12.0182 0.3623 -2.3939 44 1 13.9681 -3.9167 -5.3513 45 1 11.8470 -0.8229 -4.7041 46 1 11.2397 -2.5153 -4.4508 47 1 9.6343 -3.0517 -2.9157 48 1 9.7169 -2.2053 -1.3393 49 1 4.1206 -2.1323 -0.0090 50 1 1.6582 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053986326.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:33 Heat of formation + Delta-G solvation = -1.829794 kcal Electronic energy + Delta-G solvation = -29919.790859 eV Core-core repulsion = 25913.602122 eV Total energy + Delta-G solvation = -4006.188736 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.67930 -39.87022 -38.79134 -36.41381 -34.83286 -34.33363 -32.15154 -31.68804 -31.07296 -30.03888 -28.12409 -26.93749 -25.83329 -24.83468 -24.49285 -22.92807 -22.21316 -21.85478 -20.84772 -20.03766 -18.83749 -17.30397 -16.96753 -16.70952 -16.24047 -15.63995 -15.30216 -15.26220 -15.09756 -14.77592 -14.56517 -14.19875 -14.00243 -13.77306 -13.73884 -13.64677 -13.50322 -12.93941 -12.77247 -12.55990 -12.45714 -12.37169 -12.12969 -11.93553 -11.77454 -11.42775 -11.40877 -11.16462 -11.07316 -11.05059 -10.94847 -10.81030 -10.74535 -10.63766 -10.10787 -9.77711 -9.57128 -9.16386 -9.02277 -8.83501 -8.66930 -8.63734 -6.96337 -5.84253 -3.16289 1.13785 1.28863 2.56515 3.07348 3.35669 3.40044 3.42552 3.64175 4.19753 4.30902 4.46737 4.49365 4.65013 4.70724 4.76469 4.81718 4.90112 4.98158 5.03828 5.14223 5.16680 5.24648 5.28375 5.31884 5.32233 5.40336 5.44963 5.50177 5.54347 5.57098 5.58602 5.80410 5.83227 5.89416 5.90699 5.93489 6.13643 6.24100 6.24802 6.34836 6.42731 6.45494 6.51204 6.55698 6.60949 6.85015 6.94394 7.12413 7.42441 7.46904 7.59746 7.89395 8.17066 8.96627 9.63109 10.56407 11.34327 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.026398 B = 0.002002 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.446003 B =13979.318602 C =14186.093031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 C -0.125 4.125 4 C -0.108 4.108 5 C -0.071 4.071 6 C -0.072 4.072 7 H 0.105 0.895 8 C -0.141 4.141 9 C 0.518 3.482 10 O -0.534 6.534 11 N -0.712 5.712 12 C 0.108 3.892 13 H 0.104 0.896 14 C 0.041 3.959 15 O -0.362 6.362 16 C 0.042 3.958 17 C 0.127 3.873 18 N -0.601 5.601 19 C -0.219 4.219 20 H 0.083 0.917 21 C -0.006 4.006 22 N -0.917 5.917 23 Si 0.914 3.086 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.155 3.845 28 C -0.115 4.115 29 C -0.079 4.079 30 C -0.123 4.123 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.403 0.597 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.040 0.960 44 H 0.255 0.745 45 H 0.036 0.964 46 H 0.062 0.938 47 H 0.094 0.906 48 H 0.083 0.917 49 H 0.119 0.881 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.051 7.485 11.593 26.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.143 4.143 4 C -0.126 4.126 5 C -0.071 4.071 6 C -0.093 4.093 7 H 0.123 0.877 8 C -0.199 4.199 9 C 0.303 3.697 10 O -0.410 6.410 11 N -0.363 5.363 12 C 0.003 3.997 13 H 0.122 0.878 14 C -0.037 4.037 15 O -0.279 6.279 16 C 0.001 3.999 17 C 0.001 3.999 18 N -0.329 5.329 19 C -0.347 4.347 20 H 0.101 0.899 21 C -0.203 4.203 22 N -0.563 5.563 23 Si 0.744 3.256 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.029 3.971 28 C -0.153 4.153 29 C -0.097 4.097 30 C -0.141 4.141 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.238 0.762 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.080 0.920 47 H 0.113 0.887 48 H 0.101 0.899 49 H 0.137 0.863 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -23.276 7.111 10.915 26.674 hybrid contribution 1.214 -0.521 0.255 1.345 sum -22.063 6.590 11.171 25.592 Atomic orbital electron populations 1.20783 0.91405 1.02563 1.02289 1.19909 0.95946 0.93290 0.99732 1.20927 0.93997 0.97428 1.01916 1.20981 0.94268 0.97191 1.00155 1.19273 0.93217 0.93615 1.01040 1.20298 0.93123 1.01577 0.94309 0.87724 1.21807 1.01428 1.00874 0.95790 1.20475 0.82273 0.79699 0.87212 1.90719 1.55179 1.48130 1.46953 1.45958 1.06788 1.58456 1.25125 1.22606 0.96397 0.95076 0.85656 0.87791 1.23887 0.86163 0.96765 0.96914 1.88755 1.22246 1.32374 1.84562 1.23902 0.90468 0.87160 0.98355 1.22414 0.88807 0.93227 0.95455 1.45393 1.35061 1.36856 1.15581 1.18871 1.05478 1.14036 0.96272 0.89933 1.24853 0.99633 1.00622 0.95201 1.69856 1.45224 1.40098 1.01140 0.86113 0.81127 0.81115 0.77229 1.21391 1.21602 1.20629 1.22404 0.85618 0.98439 0.90666 1.22663 0.90616 0.99388 1.02596 1.20885 0.93907 0.97584 0.97287 1.20984 0.94120 0.97460 1.01541 0.91234 0.91654 0.91689 0.86232 0.86147 0.91453 0.91174 0.91787 0.76229 0.91255 0.89519 0.93862 0.94249 0.93485 0.94588 0.91967 0.88747 0.89875 0.86321 0.86253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.01 36.01 0.36 -0.38 16 2 C -0.09 -0.81 5.88 -104.62 -0.62 -1.43 16 3 C -0.12 -1.13 9.70 -39.58 -0.38 -1.51 16 4 C -0.11 -1.03 9.67 -39.59 -0.38 -1.41 16 5 C -0.07 -0.74 4.40 -104.62 -0.46 -1.20 16 6 C -0.07 -0.66 2.90 -92.93 -0.27 -0.93 16 7 H 0.10 0.79 7.88 -51.92 -0.41 0.38 16 8 C -0.14 -1.04 8.90 37.15 0.33 -0.71 16 9 C 0.52 6.27 7.02 -10.99 -0.08 6.20 16 10 O -0.53 -8.35 14.73 5.56 0.08 -8.27 16 11 N -0.71 -8.26 5.05 -51.72 -0.26 -8.52 16 12 C 0.11 1.47 3.51 -65.77 -0.23 1.24 16 13 H 0.10 1.46 7.54 -51.93 -0.39 1.06 16 14 C 0.04 0.60 7.43 38.25 0.28 0.89 16 15 O -0.36 -6.40 11.32 -35.23 -0.40 -6.80 16 16 C 0.04 0.78 1.66 -90.66 -0.15 0.63 16 17 C 0.13 2.60 8.20 -8.03 -0.07 2.54 16 18 N -0.60 -15.17 3.73 -184.58 -0.69 -15.86 16 19 C -0.22 -6.03 10.73 -15.06 -0.16 -6.19 16 20 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 21 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 22 N -0.92 -27.04 11.82 55.49 0.66 -26.38 16 23 Si 0.91 21.76 29.56 -169.99 -5.02 16.73 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 C 0.15 3.66 6.74 -7.87 -0.05 3.61 16 28 C -0.11 -1.80 6.11 -25.50 -0.16 -1.95 16 29 C -0.08 -0.86 7.92 -39.58 -0.31 -1.17 16 30 C -0.12 -1.22 9.70 -39.59 -0.38 -1.61 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 33 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 34 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.12 0.91 7.95 -52.48 -0.42 0.49 16 36 H 0.07 0.43 7.57 -51.93 -0.39 0.04 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.51 7.40 -51.93 -0.38 0.12 16 39 H 0.40 4.01 8.04 -40.82 -0.33 3.68 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.04 0.79 7.91 -51.93 -0.41 0.38 16 43 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 45 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.06 1.58 7.40 -51.93 -0.38 1.20 16 47 H 0.09 1.59 7.82 -51.93 -0.41 1.19 16 48 H 0.08 1.23 7.70 -51.93 -0.40 0.83 16 49 H 0.12 1.30 7.52 -52.49 -0.39 0.90 16 50 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 405.52 15.07 6.11 6.11 Total: -1.00 -33.08 405.52 -10.44 -43.52 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -8.09 Total: 3.11 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -2.83 Total: -3.65 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: -0.29 Total: -50.76 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.32 Total: -15.07 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.08 -10.44 -43.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053986326.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.689 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds