Wall clock time and date at job start Wed Apr 1 2020 04:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38235 * 119.99621 * 2 1 4 4 C 1.38236 * 119.99385 * 180.02562 * 3 2 1 5 5 C 1.38228 * 120.00644 * 359.95300 * 4 3 2 6 6 C 1.50702 * 120.00516 * 180.02562 * 5 4 3 7 7 H 1.09009 * 109.46568 * 0.02562 * 6 5 4 8 8 C 1.52994 * 109.47257 * 119.99794 * 6 5 4 9 9 C 1.50701 * 109.47124 * 240.00292 * 6 5 4 10 10 O 1.21277 * 119.99995 * 359.97438 * 9 6 5 11 11 N 1.34775 * 119.99828 * 179.97438 * 9 6 5 12 12 C 1.46500 * 120.00268 * 179.97438 * 11 9 6 13 13 H 1.09002 * 110.77176 * 328.53881 * 12 11 9 14 14 C 1.55062 * 111.04582 * 92.19081 * 12 11 9 15 15 O 1.44602 * 103.66786 * 81.72388 * 14 12 11 16 16 C 1.42834 * 106.73516 * 39.08121 * 15 14 12 17 17 C 1.52649 * 115.96086 * 202.48652 * 16 15 14 18 18 N 1.47224 * 87.78425 * 218.40776 * 17 16 15 19 19 C 1.36935 * 135.96655 * 206.41687 * 18 17 16 20 20 H 1.07995 * 120.00083 * 6.48200 * 19 18 17 21 21 C 1.38817 * 119.99741 * 186.48533 * 19 18 17 22 22 N 1.31620 * 119.99762 * 6.40711 * 21 19 18 23 23 Si 1.86796 * 119.99659 * 186.41024 * 21 19 18 24 24 H 1.48494 * 109.47314 * 84.99017 * 23 21 19 25 25 H 1.48507 * 109.46943 * 204.98927 * 23 21 19 26 26 H 1.48495 * 109.47489 * 324.98593 * 23 21 19 27 27 C 1.47222 * 88.06547 * 26.67283 * 18 17 16 28 28 C 1.53320 * 108.33238 * 334.31616 * 16 15 14 29 29 C 1.38238 * 119.99580 * 0.27452 * 5 4 3 30 30 C 1.38230 * 120.00098 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.46971 * 90.00965 * 1 2 3 32 32 H 1.09000 * 109.47037 * 210.00154 * 1 2 3 33 33 H 1.08990 * 109.47405 * 330.00269 * 1 2 3 34 34 H 1.07991 * 120.00049 * 359.97438 * 3 2 1 35 35 H 1.08004 * 119.99183 * 179.97438 * 4 3 2 36 36 H 1.09002 * 109.47168 * 180.02562 * 8 6 5 37 37 H 1.09006 * 109.47182 * 300.00393 * 8 6 5 38 38 H 1.09004 * 109.46962 * 60.00156 * 8 6 5 39 39 H 0.96998 * 119.99811 * 0.02562 * 11 9 6 40 40 H 1.09000 * 110.58348 * 200.27652 * 14 12 11 41 41 H 1.09003 * 110.58393 * 323.17471 * 14 12 11 42 42 H 1.09001 * 113.50032 * 103.67854 * 17 16 15 43 43 H 1.09000 * 113.50173 * 333.14182 * 17 16 15 44 44 H 0.96999 * 119.99603 * 179.97438 * 22 21 19 45 45 H 1.08997 * 113.50605 * 88.05400 * 27 18 17 46 46 H 1.08996 * 113.50269 * 218.60592 * 27 18 17 47 47 H 1.09004 * 110.56376 * 120.17683 * 28 16 15 48 48 H 1.08997 * 110.56344 * 242.88280 * 28 16 15 49 49 H 1.07999 * 119.99874 * 179.72398 * 29 5 4 50 50 H 1.08006 * 120.00070 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 0.0001 -0.0001 6 6 5.7787 0.0001 -0.0001 7 1 6.1420 1.0278 0.0000 8 6 6.2887 -0.7206 1.2494 9 6 6.2811 -0.7107 -1.2303 10 8 5.4930 -1.1723 -2.0283 11 7 7.6061 -0.8335 -1.4438 12 6 8.0945 -1.5250 -2.6394 13 1 7.4041 -2.3134 -2.9392 14 6 8.3317 -0.5268 -3.8021 15 8 9.6335 0.0320 -3.5126 16 6 10.4407 -1.0389 -3.0210 17 6 11.6399 -0.6345 -2.1674 18 7 12.3978 -1.7132 -2.8227 19 6 13.4680 -2.5028 -2.4969 20 1 13.8875 -2.4604 -1.5027 21 6 14.0137 -3.3578 -3.4446 22 7 13.5865 -3.3196 -4.6890 23 14 15.3541 -4.5626 -2.9538 24 1 14.7347 -5.7958 -2.4053 25 1 16.1709 -4.9068 -4.1453 26 1 16.2225 -3.9432 -1.9206 27 6 11.5052 -1.5667 -3.9844 28 6 9.5166 -2.0959 -2.4051 29 6 3.5805 -1.1971 -0.0048 30 6 2.1982 -1.1971 -0.0005 31 1 -0.3633 -0.0002 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8899 0.5137 34 1 1.6581 2.1324 -0.0004 35 1 4.1204 2.1325 -0.0010 36 1 7.3788 -0.7203 1.2496 37 1 5.9254 -0.2065 2.1392 38 1 5.9254 -1.7483 1.2498 39 1 8.2364 -0.4647 -0.8054 40 1 8.3427 -1.0487 -4.7590 41 1 7.5703 0.2532 -3.7988 42 1 11.4880 -0.7963 -1.1002 43 1 12.0182 0.3623 -2.3939 44 1 13.9681 -3.9167 -5.3513 45 1 11.8470 -0.8229 -4.7041 46 1 11.2397 -2.5153 -4.4508 47 1 9.6343 -3.0517 -2.9157 48 1 9.7169 -2.2053 -1.3393 49 1 4.1206 -2.1323 -0.0090 50 1 1.6582 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053986326.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:31 Heat of formation + Delta-G solvation = -21.970011 kcal Electronic energy + Delta-G solvation = -29920.664204 eV Core-core repulsion = 25913.602122 eV Total energy + Delta-G solvation = -4007.062082 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.82067 -41.00903 -39.72389 -37.98196 -35.59152 -35.47805 -34.18014 -32.45753 -31.78184 -31.14993 -29.85274 -27.53809 -27.46970 -26.56708 -25.31161 -23.97470 -23.63735 -22.86751 -21.82250 -20.91150 -20.44760 -18.76469 -18.21321 -17.89160 -17.19462 -17.01649 -16.61287 -16.40709 -16.12504 -15.95217 -15.67025 -15.56294 -15.47688 -14.82622 -14.54821 -14.42572 -14.32743 -14.18002 -14.12310 -13.79984 -13.50680 -13.13916 -13.03578 -12.95471 -12.84741 -12.74903 -12.58818 -12.57778 -12.50360 -12.37470 -12.33221 -12.17456 -11.93596 -11.81373 -11.73133 -11.47809 -10.87453 -10.76125 -10.52660 -9.96091 -9.74145 -9.35833 -8.99807 -7.95153 -5.28911 0.43386 0.57476 1.46487 1.49067 1.57009 1.62729 2.13179 2.43033 2.86585 2.92805 3.26746 3.37574 3.57054 3.60954 3.64353 3.68785 3.81227 3.97407 4.04668 4.11450 4.16315 4.24992 4.33212 4.36355 4.58472 4.60866 4.62437 4.68258 4.73952 4.81333 4.83380 4.84950 4.86773 4.87544 4.93224 4.96438 4.97131 5.01319 5.12647 5.17360 5.23421 5.27015 5.32930 5.44238 5.46265 5.55714 5.73851 5.75387 5.83329 6.07458 6.17507 6.56006 6.85427 7.24384 7.55505 8.54959 9.23956 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.026398 B = 0.002002 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.446003 B =13979.318602 C =14186.093031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.098 4.098 3 C -0.133 4.133 4 C -0.116 4.116 5 C -0.086 4.086 6 C -0.064 4.064 7 H 0.127 0.873 8 C -0.138 4.138 9 C 0.519 3.481 10 O -0.571 6.571 11 N -0.703 5.703 12 C 0.123 3.877 13 H 0.103 0.897 14 C 0.038 3.962 15 O -0.369 6.369 16 C 0.071 3.929 17 C 0.128 3.872 18 N -0.626 5.626 19 C -0.227 4.227 20 H 0.094 0.906 21 C -0.068 4.068 22 N -0.955 5.955 23 Si 0.983 3.017 24 H -0.281 1.281 25 H -0.298 1.298 26 H -0.266 1.266 27 C 0.148 3.852 28 C -0.106 4.106 29 C -0.097 4.097 30 C -0.139 4.139 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.414 0.586 40 H 0.069 0.931 41 H 0.099 0.901 42 H 0.074 0.926 43 H 0.038 0.962 44 H 0.249 0.751 45 H 0.007 0.993 46 H 0.034 0.966 47 H 0.080 0.920 48 H 0.100 0.900 49 H 0.109 0.891 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.065 8.547 13.996 29.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.098 4.098 3 C -0.150 4.150 4 C -0.134 4.134 5 C -0.086 4.086 6 C -0.085 4.085 7 H 0.145 0.855 8 C -0.196 4.196 9 C 0.306 3.694 10 O -0.450 6.450 11 N -0.355 5.355 12 C 0.017 3.983 13 H 0.121 0.879 14 C -0.040 4.040 15 O -0.287 6.287 16 C 0.030 3.970 17 C 0.003 3.997 18 N -0.354 5.354 19 C -0.355 4.355 20 H 0.111 0.889 21 C -0.261 4.261 22 N -0.604 5.604 23 Si 0.811 3.189 24 H -0.208 1.208 25 H -0.225 1.225 26 H -0.191 1.191 27 C 0.022 3.978 28 C -0.144 4.144 29 C -0.115 4.115 30 C -0.157 4.157 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.251 0.749 40 H 0.087 0.913 41 H 0.118 0.882 42 H 0.093 0.907 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.025 0.975 46 H 0.053 0.947 47 H 0.098 0.902 48 H 0.119 0.881 49 H 0.127 0.873 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -24.296 8.208 13.370 28.921 hybrid contribution 1.454 -0.773 -0.521 1.727 sum -22.841 7.435 12.849 27.242 Atomic orbital electron populations 1.20821 0.89645 1.03625 1.02784 1.20259 0.97406 0.93085 0.99019 1.21271 0.94199 0.98280 1.01288 1.21285 0.94745 0.97668 0.99699 1.19471 0.93954 0.93750 1.01459 1.20324 0.92458 1.02461 0.93283 0.85502 1.21812 1.02182 1.00221 0.95345 1.21012 0.81794 0.78976 0.87587 1.90709 1.56078 1.49743 1.48484 1.45851 1.07070 1.58064 1.24539 1.22311 0.95116 0.94760 0.86091 0.87885 1.24050 0.84994 0.97448 0.97495 1.88747 1.23361 1.32066 1.84514 1.23420 0.90213 0.87723 0.95600 1.22524 0.88324 0.91724 0.97119 1.45691 1.34979 1.38141 1.16610 1.19336 1.05620 1.13848 0.96679 0.88862 1.25742 1.02352 1.02762 0.95212 1.70054 1.46891 1.41164 1.02251 0.85026 0.78328 0.78832 0.76717 1.20780 1.22487 1.19071 1.22365 0.87908 0.96600 0.90941 1.22556 0.91046 0.97732 1.03090 1.20965 0.94499 0.97661 0.98411 1.21211 0.94098 0.98445 1.01905 0.90907 0.90948 0.90342 0.84186 0.84196 0.90134 0.89872 0.92802 0.74873 0.91262 0.88243 0.90750 0.94464 0.94211 0.97498 0.94717 0.90173 0.88129 0.87318 0.85415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.01 71.24 0.71 -0.55 16 2 C -0.10 -1.67 5.88 -19.87 -0.12 -1.78 16 3 C -0.13 -2.15 9.70 22.27 0.22 -1.93 16 4 C -0.12 -1.98 9.67 22.27 0.22 -1.76 16 5 C -0.09 -1.67 4.40 -19.87 -0.09 -1.76 16 6 C -0.06 -1.03 2.90 -12.29 -0.04 -1.07 16 7 H 0.13 1.48 7.88 -2.38 -0.02 1.46 16 8 C -0.14 -1.70 8.90 71.98 0.64 -1.06 16 9 C 0.52 11.67 7.02 87.66 0.62 12.28 16 10 O -0.57 -17.46 14.73 -3.02 -0.04 -17.51 16 11 N -0.70 -14.65 5.05 -435.94 -2.20 -16.86 16 12 C 0.12 3.18 3.51 46.39 0.16 3.34 16 13 H 0.10 2.78 7.54 -2.39 -0.02 2.76 16 14 C 0.04 1.07 7.43 72.69 0.54 1.61 16 15 O -0.37 -12.64 11.32 -148.98 -1.69 -14.32 16 16 C 0.07 2.62 1.66 -10.81 -0.02 2.60 16 17 C 0.13 5.07 8.20 83.40 0.68 5.75 16 18 N -0.63 -31.75 3.73 -739.01 -2.75 -34.51 16 19 C -0.23 -12.45 10.73 84.04 0.90 -11.55 16 20 H 0.09 4.78 7.84 -2.91 -0.02 4.75 16 21 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 22 N -0.96 -58.10 11.82 21.65 0.26 -57.85 16 23 Si 0.98 44.99 29.56 68.60 2.03 47.02 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 25 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 26 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 27 C 0.15 7.25 6.74 83.50 0.56 7.81 16 28 C -0.11 -3.20 6.11 31.39 0.19 -3.00 16 29 C -0.10 -2.10 7.92 22.27 0.18 -1.92 16 30 C -0.14 -2.70 9.70 22.27 0.22 -2.48 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 0.70 8.09 -2.39 -0.02 0.68 16 33 H 0.08 0.67 8.08 -2.39 -0.02 0.65 16 34 H 0.14 1.59 8.06 -2.92 -0.02 1.57 16 35 H 0.14 1.72 7.95 -2.91 -0.02 1.69 16 36 H 0.08 0.77 7.57 -2.39 -0.02 0.76 16 37 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.05 0.78 7.40 -2.39 -0.02 0.76 16 39 H 0.41 6.87 8.04 -92.71 -0.75 6.12 16 40 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 41 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 42 H 0.07 2.49 7.91 -2.39 -0.02 2.47 16 43 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 45 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.03 1.85 7.40 -2.39 -0.02 1.83 16 47 H 0.08 2.70 7.82 -2.38 -0.02 2.68 16 48 H 0.10 2.71 7.70 -2.39 -0.02 2.69 16 49 H 0.11 2.44 7.52 -2.91 -0.02 2.42 16 50 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -73.05 405.52 1.83 -71.22 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.19 Total: 21.62 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 6.04 Total: 1.18 kcal Atomic # 7 Polarization: -104.51 SS G_CDS: -4.70 Total: -109.21 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -1.73 Total: -31.83 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -73.05 1.83 -71.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053986326.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.250 kcal (2) G-P(sol) polarization free energy of solvation -73.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds