Wall clock time and date at job start Wed Apr 1 2020 04:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38233 * 120.00009 * 2 1 4 4 C 1.38231 * 120.00189 * 180.02562 * 3 2 1 5 5 C 1.38244 * 119.99746 * 359.95228 * 4 3 2 6 6 C 1.50701 * 119.99737 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.46971 * 359.97438 * 6 5 4 8 8 C 1.53010 * 109.46770 * 239.99897 * 6 5 4 9 9 C 1.50696 * 109.47361 * 119.99997 * 6 5 4 10 10 O 1.21278 * 119.99697 * 359.97438 * 9 6 5 11 11 N 1.34776 * 119.99860 * 179.97438 * 9 6 5 12 12 C 1.46503 * 119.99540 * 179.97438 * 11 9 6 13 13 H 1.09001 * 110.97492 * 37.69500 * 12 11 9 14 14 C 1.55017 * 111.10877 * 273.54604 * 12 11 9 15 15 O 1.43903 * 105.18344 * 205.99163 * 14 12 11 16 16 C 1.42402 * 109.55801 * 24.28930 * 15 14 12 17 17 C 1.52704 * 116.14002 * 129.84919 * 16 15 14 18 18 N 1.47210 * 87.86272 * 90.73415 * 17 16 15 19 19 C 1.36935 * 135.97302 * 206.39269 * 18 17 16 20 20 H 1.07997 * 120.00351 * 359.97438 * 19 18 17 21 21 C 1.38815 * 120.00246 * 179.97438 * 19 18 17 22 22 N 1.31624 * 119.99470 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00365 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46988 * 60.00300 * 23 21 19 25 25 H 1.48499 * 109.47164 * 179.97438 * 23 21 19 26 26 H 1.48489 * 109.47247 * 300.00345 * 23 21 19 27 27 C 1.47209 * 88.05579 * 26.42335 * 18 17 16 28 28 C 1.53659 * 108.53339 * 358.09243 * 16 15 14 29 29 C 1.38229 * 119.99960 * 0.27679 * 5 4 3 30 30 C 1.38234 * 120.00312 * 359.54051 * 29 5 4 31 31 H 1.08998 * 109.47402 * 90.00139 * 1 2 3 32 32 H 1.09003 * 109.46958 * 209.99917 * 1 2 3 33 33 H 1.08999 * 109.46938 * 330.00040 * 1 2 3 34 34 H 1.07995 * 119.99878 * 359.97438 * 3 2 1 35 35 H 1.07996 * 120.00333 * 179.97438 * 4 3 2 36 36 H 1.09000 * 109.46698 * 300.00235 * 8 6 5 37 37 H 1.09003 * 109.46520 * 59.99920 * 8 6 5 38 38 H 1.08996 * 109.46843 * 179.97438 * 8 6 5 39 39 H 0.96994 * 120.00311 * 359.97438 * 11 9 6 40 40 H 1.09000 * 110.30114 * 87.06429 * 14 12 11 41 41 H 1.09001 * 110.29857 * 324.91858 * 14 12 11 42 42 H 1.09002 * 113.50144 * 335.96920 * 17 16 15 43 43 H 1.08997 * 113.49644 * 205.49348 * 17 16 15 44 44 H 0.97002 * 119.99761 * 180.02562 * 22 21 19 45 45 H 1.09001 * 113.49691 * 88.26969 * 27 18 17 46 46 H 1.08995 * 113.50212 * 218.74855 * 27 18 17 47 47 H 1.09002 * 110.93075 * 97.29470 * 28 16 15 48 48 H 1.09002 * 110.93025 * 220.95868 * 28 16 15 49 49 H 1.08000 * 120.00091 * 179.72779 * 29 5 4 50 50 H 1.07994 * 120.00440 * 180.20642 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 -0.0001 -0.0001 6 6 5.7787 0.0000 -0.0001 7 1 6.1420 1.0277 -0.0009 8 6 6.2887 -0.7218 -1.2491 9 6 6.2811 -0.7099 1.2306 10 8 5.4930 -1.1701 2.0293 11 7 7.6062 -0.8333 1.4436 12 6 8.0946 -1.5230 2.6404 13 1 7.4650 -2.3796 2.8812 14 6 8.1970 -0.5499 3.8427 15 8 9.2089 -1.1123 4.6975 16 6 10.0803 -1.9343 3.9277 17 6 11.5755 -1.6763 4.1002 18 7 11.5683 -2.6798 5.1772 19 6 12.3138 -2.9251 6.2994 20 1 13.1412 -2.2780 6.5502 21 6 12.0059 -4.0055 7.1148 22 7 10.9971 -4.7939 6.8094 23 14 13.0232 -4.3405 8.6452 24 1 12.9467 -3.1703 9.5563 25 1 12.4935 -5.5423 9.3384 26 1 14.4374 -4.5748 8.2580 27 6 10.4093 -3.3047 4.5190 28 6 9.5807 -1.9493 2.4747 29 6 3.5806 -1.1971 -0.0049 30 6 2.1982 -1.1972 -0.0005 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6582 2.1324 -0.0004 35 1 4.1205 2.1324 -0.0010 36 1 5.9253 -1.7494 -1.2486 37 1 5.9252 -0.2083 -2.1393 38 1 7.3787 -0.7214 -1.2494 39 1 8.2365 -0.4656 0.8046 40 1 7.2439 -0.4973 4.3689 41 1 8.4973 0.4412 3.5026 42 1 11.8055 -0.6687 4.4465 43 1 12.1699 -1.9711 3.2355 44 1 10.7817 -5.5487 7.3794 45 1 10.6834 -4.0462 3.7685 46 1 9.6573 -3.6703 5.2181 47 1 10.1274 -1.2278 1.8675 48 1 9.6536 -2.9497 2.0481 49 1 4.1205 -2.1325 -0.0089 50 1 1.6582 -2.1325 -0.0009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053986328.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:40 Heat of formation + Delta-G solvation = 3.059278 kcal Electronic energy + Delta-G solvation = -29672.384544 eV Core-core repulsion = 25666.407813 eV Total energy + Delta-G solvation = -4005.976730 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.68521 -39.84472 -38.85694 -36.32743 -34.88890 -34.51571 -32.10047 -31.72053 -31.09785 -30.14790 -28.09002 -26.97567 -25.68619 -24.74508 -24.59509 -22.95867 -22.29296 -21.61979 -21.00479 -20.12578 -19.03227 -17.35464 -16.90504 -16.66742 -16.26171 -15.65506 -15.31747 -15.30619 -14.87570 -14.81055 -14.50210 -14.27624 -13.93901 -13.85827 -13.56242 -13.51806 -13.42374 -13.13433 -13.05072 -12.83366 -12.60738 -12.41243 -12.00035 -11.93757 -11.87704 -11.83567 -11.48719 -11.21500 -11.15895 -11.08768 -11.04432 -10.78195 -10.48141 -10.16366 -9.94393 -9.79174 -9.45051 -9.13634 -9.03937 -8.79270 -8.69820 -8.61733 -6.83956 -5.70396 -3.02404 1.10859 1.26526 2.49492 2.94018 3.44384 3.47855 3.49589 3.60171 4.20968 4.23987 4.41418 4.49588 4.54879 4.67401 4.72951 4.74739 4.85690 4.91599 5.02465 5.07278 5.12253 5.22088 5.26781 5.29892 5.30720 5.34561 5.38343 5.44338 5.52880 5.55231 5.65291 5.73003 5.84863 5.87244 5.90169 5.91810 6.01453 6.07688 6.22001 6.32657 6.39889 6.40906 6.42268 6.55699 6.63941 6.82544 6.95136 7.24587 7.34765 7.56627 7.80830 8.04200 8.09475 9.09013 9.76030 10.68242 11.47429 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023945 B = 0.001937 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.080797 B =14455.308463 C =14974.615504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.088 4.088 3 C -0.124 4.124 4 C -0.108 4.108 5 C -0.073 4.073 6 C -0.070 4.070 7 H 0.104 0.896 8 C -0.141 4.141 9 C 0.516 3.484 10 O -0.524 6.524 11 N -0.717 5.717 12 C 0.113 3.887 13 H 0.106 0.894 14 C 0.042 3.958 15 O -0.333 6.333 16 C 0.057 3.943 17 C 0.112 3.888 18 N -0.602 5.602 19 C -0.215 4.215 20 H 0.081 0.919 21 C -0.009 4.009 22 N -0.920 5.920 23 Si 0.914 3.086 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.153 3.847 28 C -0.141 4.141 29 C -0.079 4.079 30 C -0.122 4.122 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.400 0.600 40 H 0.085 0.915 41 H 0.056 0.944 42 H 0.045 0.955 43 H 0.043 0.957 44 H 0.254 0.746 45 H 0.036 0.964 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.090 0.910 49 H 0.119 0.881 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.200 11.885 -21.910 29.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.142 4.142 4 C -0.126 4.126 5 C -0.074 4.074 6 C -0.092 4.092 7 H 0.122 0.878 8 C -0.199 4.199 9 C 0.301 3.699 10 O -0.399 6.399 11 N -0.370 5.370 12 C 0.008 3.992 13 H 0.124 0.876 14 C -0.037 4.037 15 O -0.250 6.250 16 C 0.016 3.984 17 C -0.014 4.014 18 N -0.327 5.327 19 C -0.343 4.343 20 H 0.098 0.902 21 C -0.205 4.205 22 N -0.567 5.567 23 Si 0.744 3.256 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.027 3.973 28 C -0.180 4.180 29 C -0.097 4.097 30 C -0.140 4.140 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.235 0.765 40 H 0.103 0.897 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.054 0.946 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.108 0.892 49 H 0.137 0.863 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.641 11.380 -20.745 28.927 hybrid contribution 0.954 -0.067 0.338 1.014 sum -15.687 11.312 -20.407 28.116 Atomic orbital electron populations 1.20790 0.91364 1.02797 1.02139 1.19923 0.95992 0.93278 0.99578 1.20931 0.93998 0.97453 1.01863 1.20965 0.94282 0.97117 1.00245 1.19254 0.93137 0.93653 1.01313 1.20293 0.93270 1.01439 0.94183 0.87772 1.21809 1.01224 1.01011 0.95823 1.20517 0.82241 0.79815 0.87294 1.90760 1.55039 1.47466 1.46609 1.45896 1.06960 1.59096 1.25075 1.22753 0.95755 0.95881 0.84818 0.87596 1.23746 0.92796 0.95865 0.91280 1.88491 1.40755 1.64146 1.31614 1.23378 0.91525 0.96168 0.87350 1.22682 0.91887 0.94785 0.92080 1.45360 1.35161 1.30018 1.22208 1.18845 1.08930 1.09269 0.97211 0.90161 1.24794 0.98772 0.97673 0.99271 1.69816 1.29605 1.18160 1.39120 0.86167 0.79249 0.77422 0.82722 1.21055 1.21555 1.21211 1.22389 0.90718 0.90095 0.94089 1.23126 0.93415 1.03118 0.98328 1.20888 0.93957 0.97559 0.97301 1.20999 0.94124 0.97514 1.01345 0.91302 0.91547 0.91626 0.86213 0.86185 0.91700 0.91158 0.91587 0.76487 0.89706 0.92620 0.93653 0.93989 0.93610 0.94606 0.90348 0.90272 0.89187 0.86294 0.86177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.01 36.01 0.36 -0.39 16 2 C -0.09 -0.80 5.88 -104.62 -0.62 -1.41 16 3 C -0.12 -1.10 9.70 -39.59 -0.38 -1.48 16 4 C -0.11 -0.98 9.67 -39.58 -0.38 -1.36 16 5 C -0.07 -0.72 4.39 -104.62 -0.46 -1.18 16 6 C -0.07 -0.57 2.90 -92.92 -0.27 -0.84 16 7 H 0.10 0.64 7.88 -51.93 -0.41 0.23 16 8 C -0.14 -0.85 8.90 37.16 0.33 -0.52 16 9 C 0.52 5.87 7.03 -10.99 -0.08 5.79 16 10 O -0.52 -8.27 14.88 5.56 0.08 -8.19 16 11 N -0.72 -7.19 5.13 -51.50 -0.26 -7.46 16 12 C 0.11 1.52 3.37 -65.54 -0.22 1.30 16 13 H 0.11 1.65 7.74 -51.93 -0.40 1.24 16 14 C 0.04 0.65 7.49 38.22 0.29 0.94 16 15 O -0.33 -6.91 11.17 -35.23 -0.39 -7.30 16 16 C 0.06 1.11 1.75 -90.52 -0.16 0.95 16 17 C 0.11 2.36 8.20 -8.07 -0.07 2.30 16 18 N -0.60 -16.16 3.79 -184.48 -0.70 -16.86 16 19 C -0.22 -6.29 10.74 -15.06 -0.16 -6.45 16 20 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 22 N -0.92 -28.28 11.51 55.49 0.64 -27.65 16 23 Si 0.91 22.84 29.55 -169.99 -5.02 17.81 16 24 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.15 3.71 6.88 -8.00 -0.05 3.65 16 28 C -0.14 -1.91 6.03 -25.06 -0.15 -2.07 16 29 C -0.08 -0.84 7.94 -39.59 -0.31 -1.15 16 30 C -0.12 -1.20 9.70 -39.58 -0.38 -1.59 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 33 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 34 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.12 0.83 7.95 -52.49 -0.42 0.41 16 36 H 0.06 0.44 7.37 -51.93 -0.38 0.06 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.30 7.56 -51.93 -0.39 -0.10 16 39 H 0.40 2.75 7.92 -40.82 -0.32 2.42 16 40 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.04 0.80 8.13 -51.93 -0.42 0.38 16 44 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.04 0.84 7.95 -51.93 -0.41 0.43 16 46 H 0.08 2.18 7.15 -51.93 -0.37 1.80 16 47 H 0.08 0.87 7.97 -51.93 -0.41 0.45 16 48 H 0.09 1.16 7.82 -51.93 -0.41 0.76 16 49 H 0.12 1.26 7.52 -52.49 -0.39 0.87 16 50 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 405.53 15.07 6.11 6.11 Total: -1.00 -36.30 405.53 -10.46 -46.75 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -8.09 Total: 0.63 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -2.82 Total: -3.85 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -0.32 Total: -51.96 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.31 Total: -15.49 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.30 -10.46 -46.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053986328.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.814 kcal (2) G-P(sol) polarization free energy of solvation -36.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds