Wall clock time and date at job start Wed Apr 1 2020 04:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38233 * 120.00009 * 2 1 4 4 C 1.38231 * 120.00189 * 180.02562 * 3 2 1 5 5 C 1.38244 * 119.99746 * 359.95228 * 4 3 2 6 6 C 1.50701 * 119.99737 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.46971 * 359.97438 * 6 5 4 8 8 C 1.53010 * 109.46770 * 239.99897 * 6 5 4 9 9 C 1.50696 * 109.47361 * 119.99997 * 6 5 4 10 10 O 1.21278 * 119.99697 * 359.97438 * 9 6 5 11 11 N 1.34776 * 119.99860 * 179.97438 * 9 6 5 12 12 C 1.46503 * 119.99540 * 179.97438 * 11 9 6 13 13 H 1.09001 * 110.97492 * 37.69500 * 12 11 9 14 14 C 1.55017 * 111.10877 * 273.54604 * 12 11 9 15 15 O 1.43903 * 105.18344 * 205.99163 * 14 12 11 16 16 C 1.42402 * 109.55801 * 24.28930 * 15 14 12 17 17 C 1.52704 * 116.14002 * 129.84919 * 16 15 14 18 18 N 1.47210 * 87.86272 * 90.73415 * 17 16 15 19 19 C 1.36935 * 135.97302 * 206.39269 * 18 17 16 20 20 H 1.07997 * 120.00351 * 359.97438 * 19 18 17 21 21 C 1.38815 * 120.00246 * 179.97438 * 19 18 17 22 22 N 1.31624 * 119.99470 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00365 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46988 * 60.00300 * 23 21 19 25 25 H 1.48499 * 109.47164 * 179.97438 * 23 21 19 26 26 H 1.48489 * 109.47247 * 300.00345 * 23 21 19 27 27 C 1.47209 * 88.05579 * 26.42335 * 18 17 16 28 28 C 1.53659 * 108.53339 * 358.09243 * 16 15 14 29 29 C 1.38229 * 119.99960 * 0.27679 * 5 4 3 30 30 C 1.38234 * 120.00312 * 359.54051 * 29 5 4 31 31 H 1.08998 * 109.47402 * 90.00139 * 1 2 3 32 32 H 1.09003 * 109.46958 * 209.99917 * 1 2 3 33 33 H 1.08999 * 109.46938 * 330.00040 * 1 2 3 34 34 H 1.07995 * 119.99878 * 359.97438 * 3 2 1 35 35 H 1.07996 * 120.00333 * 179.97438 * 4 3 2 36 36 H 1.09000 * 109.46698 * 300.00235 * 8 6 5 37 37 H 1.09003 * 109.46520 * 59.99920 * 8 6 5 38 38 H 1.08996 * 109.46843 * 179.97438 * 8 6 5 39 39 H 0.96994 * 120.00311 * 359.97438 * 11 9 6 40 40 H 1.09000 * 110.30114 * 87.06429 * 14 12 11 41 41 H 1.09001 * 110.29857 * 324.91858 * 14 12 11 42 42 H 1.09002 * 113.50144 * 335.96920 * 17 16 15 43 43 H 1.08997 * 113.49644 * 205.49348 * 17 16 15 44 44 H 0.97002 * 119.99761 * 180.02562 * 22 21 19 45 45 H 1.09001 * 113.49691 * 88.26969 * 27 18 17 46 46 H 1.08995 * 113.50212 * 218.74855 * 27 18 17 47 47 H 1.09002 * 110.93075 * 97.29470 * 28 16 15 48 48 H 1.09002 * 110.93025 * 220.95868 * 28 16 15 49 49 H 1.08000 * 120.00091 * 179.72779 * 29 5 4 50 50 H 1.07994 * 120.00440 * 180.20642 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 -0.0001 -0.0001 6 6 5.7787 0.0000 -0.0001 7 1 6.1420 1.0277 -0.0009 8 6 6.2887 -0.7218 -1.2491 9 6 6.2811 -0.7099 1.2306 10 8 5.4930 -1.1701 2.0293 11 7 7.6062 -0.8333 1.4436 12 6 8.0946 -1.5230 2.6404 13 1 7.4650 -2.3796 2.8812 14 6 8.1970 -0.5499 3.8427 15 8 9.2089 -1.1123 4.6975 16 6 10.0803 -1.9343 3.9277 17 6 11.5755 -1.6763 4.1002 18 7 11.5683 -2.6798 5.1772 19 6 12.3138 -2.9251 6.2994 20 1 13.1412 -2.2780 6.5502 21 6 12.0059 -4.0055 7.1148 22 7 10.9971 -4.7939 6.8094 23 14 13.0232 -4.3405 8.6452 24 1 12.9467 -3.1703 9.5563 25 1 12.4935 -5.5423 9.3384 26 1 14.4374 -4.5748 8.2580 27 6 10.4093 -3.3047 4.5190 28 6 9.5807 -1.9493 2.4747 29 6 3.5806 -1.1971 -0.0049 30 6 2.1982 -1.1972 -0.0005 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6582 2.1324 -0.0004 35 1 4.1205 2.1324 -0.0010 36 1 5.9253 -1.7494 -1.2486 37 1 5.9252 -0.2083 -2.1393 38 1 7.3787 -0.7214 -1.2494 39 1 8.2365 -0.4656 0.8046 40 1 7.2439 -0.4973 4.3689 41 1 8.4973 0.4412 3.5026 42 1 11.8055 -0.6687 4.4465 43 1 12.1699 -1.9711 3.2355 44 1 10.7817 -5.5487 7.3794 45 1 10.6834 -4.0462 3.7685 46 1 9.6573 -3.6703 5.2181 47 1 10.1274 -1.2278 1.8675 48 1 9.6536 -2.9497 2.0481 49 1 4.1205 -2.1325 -0.0089 50 1 1.6582 -2.1325 -0.0009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053986328.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:39 Heat of formation + Delta-G solvation = -21.165235 kcal Electronic energy + Delta-G solvation = -29673.434997 eV Core-core repulsion = 25666.407813 eV Total energy + Delta-G solvation = -4007.027184 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.74611 -41.02856 -39.75334 -37.92123 -35.69957 -35.56350 -34.19703 -32.47725 -31.79436 -31.27730 -29.77343 -27.53301 -27.37002 -26.53810 -25.33643 -23.90245 -23.62717 -22.79421 -21.97796 -20.96682 -20.57626 -18.77789 -18.14576 -17.83058 -17.23188 -17.01141 -16.51681 -16.31641 -16.22031 -15.98480 -15.68982 -15.42845 -15.17505 -14.90133 -14.73311 -14.57618 -14.49774 -14.25809 -14.15251 -13.61052 -13.52943 -13.36151 -13.13428 -13.05292 -12.94047 -12.80346 -12.76677 -12.60596 -12.57598 -12.38720 -12.29178 -11.82618 -11.76546 -11.71598 -11.65793 -11.34728 -10.93424 -10.79576 -10.31406 -10.07902 -9.75182 -9.36549 -8.93978 -7.91092 -5.24085 0.42402 0.56506 1.42501 1.47738 1.53520 1.62037 2.03847 2.46634 2.80920 2.92391 3.27944 3.34494 3.57912 3.59587 3.62558 3.75353 3.81811 4.00773 4.07525 4.10295 4.15782 4.17528 4.25860 4.34687 4.57681 4.60964 4.64638 4.66453 4.74548 4.82785 4.84164 4.84784 4.87526 4.88618 4.89969 4.96926 4.98686 5.03056 5.14521 5.22730 5.26389 5.28774 5.32627 5.42782 5.49081 5.54714 5.72390 5.74516 5.91989 6.16758 6.30637 6.56300 6.89018 7.26873 7.59190 8.59566 9.26756 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023945 B = 0.001937 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.080797 B =14455.308463 C =14974.615504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.098 4.098 3 C -0.133 4.133 4 C -0.115 4.115 5 C -0.088 4.088 6 C -0.061 4.061 7 H 0.134 0.866 8 C -0.138 4.138 9 C 0.514 3.486 10 O -0.574 6.574 11 N -0.698 5.698 12 C 0.126 3.874 13 H 0.078 0.922 14 C 0.039 3.961 15 O -0.373 6.373 16 C 0.076 3.924 17 C 0.115 3.885 18 N -0.641 5.641 19 C -0.228 4.228 20 H 0.086 0.914 21 C -0.074 4.074 22 N -0.956 5.956 23 Si 0.984 3.016 24 H -0.278 1.278 25 H -0.294 1.294 26 H -0.271 1.271 27 C 0.145 3.855 28 C -0.122 4.122 29 C -0.099 4.099 30 C -0.141 4.141 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.049 0.951 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.422 0.578 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.048 0.952 43 H 0.077 0.923 44 H 0.247 0.753 45 H 0.042 0.958 46 H 0.028 0.972 47 H 0.124 0.876 48 H 0.101 0.899 49 H 0.107 0.893 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.386 14.396 -24.399 32.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.151 4.151 4 C -0.133 4.133 5 C -0.088 4.088 6 C -0.082 4.082 7 H 0.152 0.848 8 C -0.195 4.195 9 C 0.302 3.698 10 O -0.453 6.453 11 N -0.352 5.352 12 C 0.020 3.980 13 H 0.096 0.904 14 C -0.039 4.039 15 O -0.292 6.292 16 C 0.034 3.966 17 C -0.010 4.010 18 N -0.367 5.367 19 C -0.356 4.356 20 H 0.104 0.896 21 C -0.266 4.266 22 N -0.605 5.605 23 Si 0.811 3.189 24 H -0.204 1.204 25 H -0.221 1.221 26 H -0.197 1.197 27 C 0.019 3.981 28 C -0.161 4.161 29 C -0.117 4.117 30 C -0.159 4.159 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.159 0.841 35 H 0.162 0.838 36 H 0.068 0.932 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.261 0.739 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.066 0.934 43 H 0.094 0.906 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.047 0.953 47 H 0.142 0.858 48 H 0.120 0.880 49 H 0.126 0.874 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.797 13.942 -23.304 31.416 hybrid contribution 0.625 -0.794 1.099 1.492 sum -15.172 13.148 -22.205 29.935 Atomic orbital electron populations 1.20824 0.89738 1.03290 1.03062 1.20260 0.97383 0.93139 0.99069 1.21283 0.94363 0.98185 1.01274 1.21307 0.94648 0.97747 0.99556 1.19519 0.94316 0.93604 1.01379 1.20340 0.92131 1.02702 0.93045 0.84809 1.21830 1.02566 1.00026 0.95121 1.21178 0.81989 0.78976 0.87655 1.90753 1.56365 1.49578 1.48572 1.45645 1.07119 1.58340 1.24134 1.22326 0.95549 0.94713 0.85425 0.90357 1.23912 0.91109 0.97404 0.91434 1.88442 1.42020 1.64446 1.34270 1.23030 0.91042 0.92305 0.90173 1.22902 0.93329 0.93499 0.91281 1.45770 1.35727 1.31962 1.23215 1.19294 1.08913 1.09022 0.98367 0.89649 1.25723 1.00278 0.97939 1.02708 1.70039 1.31519 1.18658 1.40285 0.85078 0.78122 0.76919 0.78782 1.20424 1.22052 1.19687 1.22432 0.89242 0.93049 0.93374 1.23047 0.93089 1.05302 0.94637 1.20973 0.94468 0.97783 0.98494 1.21211 0.94237 0.98413 1.02020 0.90084 0.91520 0.90672 0.84148 0.83814 0.93157 0.89836 0.89337 0.73942 0.91232 0.89804 0.93411 0.90580 0.94392 0.94073 0.95331 0.85829 0.88012 0.87449 0.85685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.01 71.24 0.71 -0.64 16 2 C -0.10 -1.73 5.88 -19.86 -0.12 -1.85 16 3 C -0.13 -2.14 9.70 22.27 0.22 -1.93 16 4 C -0.11 -1.85 9.67 22.27 0.22 -1.64 16 5 C -0.09 -1.63 4.39 -19.86 -0.09 -1.72 16 6 C -0.06 -0.83 2.90 -12.28 -0.04 -0.87 16 7 H 0.13 1.05 7.88 -2.39 -0.02 1.03 16 8 C -0.14 -1.25 8.90 71.99 0.64 -0.61 16 9 C 0.51 10.87 7.03 87.66 0.62 11.49 16 10 O -0.57 -18.35 14.88 -3.02 -0.04 -18.39 16 11 N -0.70 -11.93 5.13 -435.23 -2.23 -14.17 16 12 C 0.13 3.21 3.37 46.54 0.16 3.37 16 13 H 0.08 2.48 7.74 -2.39 -0.02 2.46 16 14 C 0.04 1.19 7.49 72.67 0.54 1.73 16 15 O -0.37 -15.57 11.17 -148.98 -1.66 -17.24 16 16 C 0.08 2.87 1.75 -10.72 -0.02 2.85 16 17 C 0.11 4.64 8.20 83.39 0.68 5.32 16 18 N -0.64 -34.78 3.79 -738.53 -2.80 -37.58 16 19 C -0.23 -13.52 10.74 84.03 0.90 -12.62 16 20 H 0.09 4.79 7.83 -2.91 -0.02 4.77 16 21 C -0.07 -4.46 5.50 84.86 0.47 -3.99 16 22 N -0.96 -61.22 11.51 21.65 0.25 -60.97 16 23 Si 0.98 47.93 29.55 68.60 2.03 49.96 16 24 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 25 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 26 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 27 C 0.15 7.22 6.88 83.43 0.57 7.80 16 28 C -0.12 -2.94 6.03 31.67 0.19 -2.75 16 29 C -0.10 -2.15 7.94 22.27 0.18 -1.98 16 30 C -0.14 -2.85 9.70 22.27 0.22 -2.63 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.78 8.09 -2.39 -0.02 0.76 16 33 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 34 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.14 1.52 7.95 -2.91 -0.02 1.50 16 36 H 0.05 0.62 7.37 -2.39 -0.02 0.60 16 37 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.09 0.40 7.56 -2.39 -0.02 0.39 16 39 H 0.42 3.71 7.92 -92.71 -0.73 2.97 16 40 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.08 2.60 8.13 -2.39 -0.02 2.58 16 44 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 45 H 0.04 1.97 7.95 -2.39 -0.02 1.95 16 46 H 0.03 1.68 7.15 -2.39 -0.02 1.66 16 47 H 0.12 1.97 7.97 -2.39 -0.02 1.95 16 48 H 0.10 2.31 7.82 -2.39 -0.02 2.29 16 49 H 0.11 2.45 7.52 -2.91 -0.02 2.43 16 50 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -84.77 405.53 1.79 -82.99 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.20 Total: 16.06 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 6.05 Total: -0.66 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -4.78 Total: -112.72 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -1.71 Total: -35.63 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Total: -84.77 1.79 -82.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053986328.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.820 kcal (2) G-P(sol) polarization free energy of solvation -84.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds