Wall clock time and date at job start Wed Apr 1 2020 03:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38359 * 119.85086 * 2 1 4 4 C 1.37953 * 120.14881 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.07937 * 180.02562 * 4 3 2 6 6 C 1.39575 * 119.85193 * 0.02562 * 4 3 2 7 7 C 1.47841 * 120.14797 * 179.97438 * 6 4 3 8 8 O 1.21556 * 120.00437 * 89.99536 * 7 6 4 9 9 N 1.34777 * 119.99768 * 269.99982 * 7 6 4 10 10 C 1.46506 * 119.99881 * 180.02562 * 9 7 6 11 11 H 1.09003 * 110.77111 * 31.46466 * 10 9 7 12 12 C 1.55060 * 111.04778 * 267.81142 * 10 9 7 13 13 O 1.44598 * 103.67133 * 205.24382 * 12 10 9 14 14 C 1.42836 * 106.73615 * 39.08653 * 13 12 10 15 15 C 1.52649 * 115.97255 * 202.47634 * 14 13 12 16 16 N 1.47223 * 87.78195 * 218.41211 * 15 14 13 17 17 C 1.36937 * 135.96285 * 206.37828 * 16 15 14 18 18 H 1.08003 * 119.99906 * 6.82996 * 17 16 15 19 19 C 1.38813 * 119.99949 * 186.83577 * 17 16 15 20 20 N 1.31615 * 120.00147 * 172.62025 * 19 17 16 21 21 Si 1.86802 * 119.99935 * 352.33591 * 19 17 16 22 22 H 1.48503 * 109.47092 * 55.35655 * 21 19 17 23 23 H 1.48494 * 109.47174 * 175.35765 * 21 19 17 24 24 H 1.48500 * 109.47071 * 295.35995 * 21 19 17 25 25 C 1.47211 * 88.06931 * 26.63282 * 16 15 14 26 26 C 1.53330 * 108.32915 * 334.30666 * 14 13 12 27 27 C 1.39585 * 119.71089 * 0.24880 * 6 4 3 28 28 C 1.50700 * 120.07515 * 179.72458 * 27 6 4 29 29 C 1.37959 * 119.84777 * 359.47983 * 27 6 4 30 30 H 1.08998 * 109.47281 * 89.99949 * 1 2 3 31 31 H 1.09004 * 109.46830 * 209.99934 * 1 2 3 32 32 H 1.08991 * 109.47275 * 329.99210 * 1 2 3 33 33 H 1.08002 * 119.92898 * 359.97438 * 3 2 1 34 34 H 1.09000 * 109.47106 * 269.97832 * 5 4 3 35 35 H 1.09005 * 109.46931 * 29.98031 * 5 4 3 36 36 H 1.08998 * 109.47463 * 149.97511 * 5 4 3 37 37 H 0.96996 * 120.00275 * 359.97438 * 9 7 6 38 38 H 1.08999 * 110.58276 * 323.79036 * 12 10 9 39 39 H 1.09006 * 110.58785 * 86.54401 * 12 10 9 40 40 H 1.08998 * 113.50401 * 103.67793 * 15 14 13 41 41 H 1.09006 * 113.55454 * 333.14827 * 15 14 13 42 42 H 0.97008 * 120.00151 * 4.51330 * 20 19 17 43 43 H 1.09001 * 113.50241 * 88.09256 * 25 16 15 44 44 H 1.09000 * 113.50492 * 218.64444 * 25 16 15 45 45 H 1.08999 * 110.55889 * 120.18702 * 26 14 13 46 46 H 1.08994 * 110.56349 * 242.89691 * 26 14 13 47 47 H 1.08997 * 109.46559 * 90.00598 * 28 27 6 48 48 H 1.08996 * 109.47031 * 210.00628 * 28 27 6 49 49 H 1.09004 * 109.47010 * 330.00819 * 28 27 6 50 50 H 1.08003 * 119.92515 * 180.27567 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5752 1.2072 0.0005 5 6 4.3237 2.5152 0.0011 6 6 4.2762 0.0003 0.0005 7 6 5.7546 0.0003 0.0005 8 8 6.3625 0.0004 1.0532 9 7 6.4285 0.0003 -1.1667 10 6 7.8935 -0.0002 -1.1667 11 1 8.2799 -0.5325 -0.2975 12 6 8.4509 1.4457 -1.2217 13 8 9.7596 1.2851 -1.8153 14 6 9.6296 0.2944 -2.8359 15 6 10.9145 -0.4266 -3.2352 16 7 10.4358 -0.3882 -4.6269 17 6 10.6315 -1.1374 -5.7563 18 1 11.1940 -2.0579 -5.7030 19 6 10.1069 -0.7139 -6.9697 20 7 10.4147 -1.3526 -8.0786 21 14 8.9578 0.7577 -7.0278 22 1 9.6213 1.9288 -6.4004 23 1 8.6289 1.0734 -8.4410 24 1 7.7099 0.4408 -6.2879 25 6 9.6599 0.8122 -4.2745 26 6 8.4456 -0.6123 -2.4797 27 6 3.5754 -1.2069 -0.0053 28 6 4.3240 -2.5148 -0.0116 29 6 2.1958 -1.1999 -0.0001 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8898 0.5139 33 1 1.6521 2.1333 -0.0004 34 1 4.5049 2.8306 -1.0264 35 1 3.7313 3.2725 0.5146 36 1 5.2762 2.3885 0.5157 37 1 5.9435 -0.0001 -2.0067 38 1 7.8204 2.0759 -1.8489 39 1 8.5313 1.8639 -0.2183 40 1 10.9909 -1.4354 -2.8295 41 1 11.8153 0.1642 -3.0689 42 1 10.9547 -2.1576 -8.0408 43 1 10.2190 1.7407 -4.3904 44 1 8.6777 0.8487 -4.7455 45 1 7.6896 -0.5807 -3.2643 46 1 8.7829 -1.6357 -2.3154 47 1 4.5044 -2.8350 1.0145 48 1 3.7321 -3.2696 -0.5291 49 1 5.2770 -2.3854 -0.5247 50 1 1.6523 -2.1332 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054003615.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:18 Heat of formation + Delta-G solvation = 0.156038 kcal Electronic energy + Delta-G solvation = -30541.531243 eV Core-core repulsion = 26535.428619 eV Total energy + Delta-G solvation = -4006.102624 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.91014 -40.15693 -38.75593 -36.70575 -34.66676 -33.96231 -33.87209 -32.38120 -30.55498 -28.56905 -28.32574 -27.47415 -27.08240 -25.79043 -25.55313 -22.93493 -21.56068 -21.23906 -21.15938 -20.35474 -19.19692 -18.04096 -17.49917 -16.75956 -16.56275 -15.94621 -15.47286 -15.20412 -15.15772 -14.71177 -14.51963 -14.37183 -13.97585 -13.67214 -13.56598 -13.50524 -13.41613 -13.34016 -13.19169 -13.02928 -12.98948 -12.83899 -12.68321 -12.07744 -11.82007 -11.75298 -11.69132 -11.58141 -11.47012 -11.33508 -11.18817 -10.92454 -10.56924 -10.39725 -10.09697 -9.94297 -9.28091 -9.22101 -8.93221 -8.92032 -8.90328 -8.84143 -7.21343 -6.37656 -3.28679 0.78413 1.01015 2.35599 2.88057 3.28322 3.33287 3.40211 3.59951 4.04013 4.32441 4.36452 4.39970 4.43982 4.53935 4.62676 4.76343 4.79640 4.86546 4.89476 4.93737 5.06450 5.12721 5.14343 5.18241 5.20111 5.20571 5.30131 5.34951 5.43652 5.43897 5.52493 5.57217 5.70076 5.71369 5.78876 5.89816 5.90516 6.04623 6.08367 6.09202 6.12676 6.22347 6.23009 6.25261 6.29092 6.31532 6.52652 6.59082 7.01357 7.24290 7.26815 7.96227 8.18343 8.92060 9.43936 10.29383 11.15305 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013496 B = 0.002811 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.243125 B = 9960.242398 C =10615.356457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.063 4.063 3 C -0.130 4.130 4 C -0.040 4.040 5 C -0.125 4.125 6 C -0.136 4.136 7 C 0.571 3.429 8 O -0.531 6.531 9 N -0.711 5.711 10 C 0.108 3.892 11 H 0.108 0.892 12 C 0.039 3.961 13 O -0.354 6.354 14 C 0.059 3.941 15 C 0.133 3.867 16 N -0.620 5.620 17 C -0.302 4.302 18 H 0.085 0.915 19 C -0.024 4.024 20 N -0.932 5.932 21 Si 1.070 2.930 22 H -0.285 1.285 23 H -0.294 1.294 24 H -0.295 1.295 25 C 0.091 3.909 26 C -0.119 4.119 27 C -0.040 4.040 28 C -0.123 4.123 29 C -0.130 4.130 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.127 0.873 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.405 0.595 38 H 0.062 0.938 39 H 0.094 0.906 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.261 0.739 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.077 0.923 48 H 0.074 0.926 49 H 0.068 0.932 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.783 3.876 18.455 27.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.064 4.064 3 C -0.148 4.148 4 C -0.041 4.041 5 C -0.181 4.181 6 C -0.139 4.139 7 C 0.357 3.643 8 O -0.407 6.407 9 N -0.363 5.363 10 C 0.003 3.997 11 H 0.126 0.874 12 C -0.039 4.039 13 O -0.271 6.271 14 C 0.018 3.982 15 C 0.007 3.993 16 N -0.351 5.351 17 C -0.428 4.428 18 H 0.103 0.897 19 C -0.223 4.223 20 N -0.574 5.574 21 Si 0.903 3.097 22 H -0.212 1.212 23 H -0.221 1.221 24 H -0.223 1.223 25 C -0.035 4.035 26 C -0.157 4.157 27 C -0.040 4.040 28 C -0.180 4.180 29 C -0.148 4.148 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.145 0.855 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.240 0.760 38 H 0.080 0.920 39 H 0.112 0.888 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.104 0.896 46 H 0.109 0.891 47 H 0.096 0.904 48 H 0.093 0.907 49 H 0.087 0.913 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.916 4.809 18.015 27.282 hybrid contribution 0.509 -1.057 0.515 1.282 sum -19.407 3.752 18.529 27.093 Atomic orbital electron populations 1.20839 0.90865 1.02995 1.02645 1.20043 0.96251 0.92958 0.97099 1.20821 0.92965 0.97859 1.03142 1.19846 0.93682 0.93985 0.96593 1.20918 1.00455 0.93736 1.02995 1.19605 0.92532 0.93784 1.07995 1.18274 0.86950 0.75152 0.83876 1.90812 1.69562 1.49111 1.31213 1.46050 1.06710 1.74813 1.08773 1.22725 0.79342 0.97426 1.00168 0.87380 1.23879 0.85321 0.95771 0.98947 1.88807 1.27975 1.59275 1.51048 1.23608 0.97354 0.89085 0.88175 1.22371 0.93734 0.97561 0.85656 1.45738 1.53412 1.28489 1.07425 1.20093 1.34360 1.03894 0.84478 0.89744 1.25731 1.01343 1.04862 0.90330 1.70922 1.40673 1.19666 1.26182 0.83699 0.75676 0.75779 0.74586 1.21225 1.22134 1.22345 1.23188 0.96471 0.92564 0.91294 1.22637 0.97347 1.00183 0.95550 1.19864 0.93692 0.94009 0.96483 1.20905 1.00195 0.93763 1.03105 1.20825 0.92965 0.97884 1.03087 0.90779 0.91328 0.91333 0.85500 0.90402 0.90808 0.91079 0.75964 0.91977 0.88791 0.92999 0.93372 0.92833 0.92850 0.93090 0.89593 0.89096 0.90420 0.90735 0.91262 0.85485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 10.01 36.01 0.36 -0.26 16 2 C -0.06 -0.51 5.89 -104.53 -0.62 -1.13 16 3 C -0.13 -1.10 9.34 -39.64 -0.37 -1.47 16 4 C -0.04 -0.40 5.91 -104.23 -0.62 -1.02 16 5 C -0.12 -1.07 9.62 36.01 0.35 -0.72 16 6 C -0.14 -1.52 5.63 -104.97 -0.59 -2.11 16 7 C 0.57 7.19 4.19 -12.33 -0.05 7.13 16 8 O -0.53 -8.45 16.74 5.32 0.09 -8.36 16 9 N -0.71 -8.09 5.19 -52.65 -0.27 -8.36 16 10 C 0.11 1.41 3.51 -65.77 -0.23 1.18 16 11 H 0.11 1.49 7.54 -51.93 -0.39 1.10 16 12 C 0.04 0.53 7.42 38.25 0.28 0.81 16 13 O -0.35 -5.96 11.32 -35.23 -0.40 -6.36 16 14 C 0.06 1.05 1.66 -90.68 -0.15 0.90 16 15 C 0.13 2.69 8.20 -8.04 -0.07 2.63 16 16 N -0.62 -15.15 3.66 -184.63 -0.68 -15.83 16 17 C -0.30 -8.59 11.08 -15.06 -0.17 -8.76 16 18 H 0.08 2.52 8.05 -52.48 -0.42 2.10 16 19 C -0.02 -0.70 5.50 -17.43 -0.10 -0.79 16 20 N -0.93 -29.14 13.70 55.49 0.76 -28.38 16 21 Si 1.07 26.43 25.14 -169.99 -4.27 22.16 16 22 H -0.29 -6.67 6.11 56.52 0.35 -6.33 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.30 -6.73 6.63 56.52 0.37 -6.36 16 25 C 0.09 1.94 5.21 -7.90 -0.04 1.89 16 26 C -0.12 -1.78 6.20 -25.49 -0.16 -1.94 16 27 C -0.04 -0.40 5.91 -104.22 -0.62 -1.02 16 28 C -0.12 -1.12 9.62 36.01 0.35 -0.77 16 29 C -0.13 -1.11 9.34 -39.64 -0.37 -1.48 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 32 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 33 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 36 H 0.07 0.72 7.08 -51.93 -0.37 0.35 16 37 H 0.41 4.02 8.40 -40.82 -0.34 3.67 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.05 0.98 7.91 -51.93 -0.41 0.57 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.26 8.06 8.73 -40.82 -0.36 7.71 16 43 H 0.05 1.17 7.69 -51.93 -0.40 0.77 16 44 H 0.05 1.09 4.50 -51.93 -0.23 0.85 16 45 H 0.09 1.29 7.45 -51.93 -0.39 0.91 16 46 H 0.09 1.35 7.81 -51.93 -0.41 0.94 16 47 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 49 H 0.07 0.69 7.08 -51.93 -0.37 0.32 16 50 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 LS Contribution 399.38 15.07 6.02 6.02 Total: -1.00 -34.00 399.38 -9.58 -43.58 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -8.03 Total: 2.46 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -2.80 Total: -6.94 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.19 Total: -52.57 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.31 Total: -14.72 kcal Atomic # 14 Polarization: 26.43 SS G_CDS: -4.27 Total: 22.16 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.00 -9.58 -43.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054003615.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.737 kcal (2) G-P(sol) polarization free energy of solvation -34.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds