Wall clock time and date at job start Wed Apr 1 2020 03:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38359 * 119.85086 * 2 1 4 4 C 1.37953 * 120.14881 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.07937 * 180.02562 * 4 3 2 6 6 C 1.39575 * 119.85193 * 0.02562 * 4 3 2 7 7 C 1.47841 * 120.14797 * 179.97438 * 6 4 3 8 8 O 1.21556 * 120.00437 * 89.99536 * 7 6 4 9 9 N 1.34777 * 119.99768 * 269.99982 * 7 6 4 10 10 C 1.46506 * 119.99881 * 180.02562 * 9 7 6 11 11 H 1.09003 * 110.77111 * 31.46466 * 10 9 7 12 12 C 1.55060 * 111.04778 * 267.81142 * 10 9 7 13 13 O 1.44598 * 103.67133 * 205.24382 * 12 10 9 14 14 C 1.42836 * 106.73615 * 39.08653 * 13 12 10 15 15 C 1.52649 * 115.97255 * 202.47634 * 14 13 12 16 16 N 1.47223 * 87.78195 * 218.41211 * 15 14 13 17 17 C 1.36937 * 135.96285 * 206.37828 * 16 15 14 18 18 H 1.08003 * 119.99906 * 6.82996 * 17 16 15 19 19 C 1.38813 * 119.99949 * 186.83577 * 17 16 15 20 20 N 1.31615 * 120.00147 * 172.62025 * 19 17 16 21 21 Si 1.86802 * 119.99935 * 352.33591 * 19 17 16 22 22 H 1.48503 * 109.47092 * 55.35655 * 21 19 17 23 23 H 1.48494 * 109.47174 * 175.35765 * 21 19 17 24 24 H 1.48500 * 109.47071 * 295.35995 * 21 19 17 25 25 C 1.47211 * 88.06931 * 26.63282 * 16 15 14 26 26 C 1.53330 * 108.32915 * 334.30666 * 14 13 12 27 27 C 1.39585 * 119.71089 * 0.24880 * 6 4 3 28 28 C 1.50700 * 120.07515 * 179.72458 * 27 6 4 29 29 C 1.37959 * 119.84777 * 359.47983 * 27 6 4 30 30 H 1.08998 * 109.47281 * 89.99949 * 1 2 3 31 31 H 1.09004 * 109.46830 * 209.99934 * 1 2 3 32 32 H 1.08991 * 109.47275 * 329.99210 * 1 2 3 33 33 H 1.08002 * 119.92898 * 359.97438 * 3 2 1 34 34 H 1.09000 * 109.47106 * 269.97832 * 5 4 3 35 35 H 1.09005 * 109.46931 * 29.98031 * 5 4 3 36 36 H 1.08998 * 109.47463 * 149.97511 * 5 4 3 37 37 H 0.96996 * 120.00275 * 359.97438 * 9 7 6 38 38 H 1.08999 * 110.58276 * 323.79036 * 12 10 9 39 39 H 1.09006 * 110.58785 * 86.54401 * 12 10 9 40 40 H 1.08998 * 113.50401 * 103.67793 * 15 14 13 41 41 H 1.09006 * 113.55454 * 333.14827 * 15 14 13 42 42 H 0.97008 * 120.00151 * 4.51330 * 20 19 17 43 43 H 1.09001 * 113.50241 * 88.09256 * 25 16 15 44 44 H 1.09000 * 113.50492 * 218.64444 * 25 16 15 45 45 H 1.08999 * 110.55889 * 120.18702 * 26 14 13 46 46 H 1.08994 * 110.56349 * 242.89691 * 26 14 13 47 47 H 1.08997 * 109.46559 * 90.00598 * 28 27 6 48 48 H 1.08996 * 109.47031 * 210.00628 * 28 27 6 49 49 H 1.09004 * 109.47010 * 330.00819 * 28 27 6 50 50 H 1.08003 * 119.92515 * 180.27567 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5752 1.2072 0.0005 5 6 4.3237 2.5152 0.0011 6 6 4.2762 0.0003 0.0005 7 6 5.7546 0.0003 0.0005 8 8 6.3625 0.0004 1.0532 9 7 6.4285 0.0003 -1.1667 10 6 7.8935 -0.0002 -1.1667 11 1 8.2799 -0.5325 -0.2975 12 6 8.4509 1.4457 -1.2217 13 8 9.7596 1.2851 -1.8153 14 6 9.6296 0.2944 -2.8359 15 6 10.9145 -0.4266 -3.2352 16 7 10.4358 -0.3882 -4.6269 17 6 10.6315 -1.1374 -5.7563 18 1 11.1940 -2.0579 -5.7030 19 6 10.1069 -0.7139 -6.9697 20 7 10.4147 -1.3526 -8.0786 21 14 8.9578 0.7577 -7.0278 22 1 9.6213 1.9288 -6.4004 23 1 8.6289 1.0734 -8.4410 24 1 7.7099 0.4408 -6.2879 25 6 9.6599 0.8122 -4.2745 26 6 8.4456 -0.6123 -2.4797 27 6 3.5754 -1.2069 -0.0053 28 6 4.3240 -2.5148 -0.0116 29 6 2.1958 -1.1999 -0.0001 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8898 0.5139 33 1 1.6521 2.1333 -0.0004 34 1 4.5049 2.8306 -1.0264 35 1 3.7313 3.2725 0.5146 36 1 5.2762 2.3885 0.5157 37 1 5.9435 -0.0001 -2.0067 38 1 7.8204 2.0759 -1.8489 39 1 8.5313 1.8639 -0.2183 40 1 10.9909 -1.4354 -2.8295 41 1 11.8153 0.1642 -3.0689 42 1 10.9547 -2.1576 -8.0408 43 1 10.2190 1.7407 -4.3904 44 1 8.6777 0.8487 -4.7455 45 1 7.6896 -0.5807 -3.2643 46 1 8.7829 -1.6357 -2.3154 47 1 4.5044 -2.8350 1.0145 48 1 3.7321 -3.2696 -0.5291 49 1 5.2770 -2.3854 -0.5247 50 1 1.6523 -2.1332 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054003615.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:17 Heat of formation + Delta-G solvation = -22.491194 kcal Electronic energy + Delta-G solvation = -30542.513300 eV Core-core repulsion = 26535.428619 eV Total energy + Delta-G solvation = -4007.084682 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.99106 -41.29391 -39.67708 -38.19961 -35.79136 -34.62276 -34.54267 -34.50202 -31.72057 -30.20645 -28.91774 -28.25371 -27.71569 -27.34290 -27.19688 -23.85999 -23.36897 -22.23044 -21.81973 -21.20037 -20.80879 -19.53144 -18.90491 -17.88380 -17.50207 -17.26967 -16.80110 -16.58879 -16.28152 -15.67562 -15.38468 -15.37350 -15.18542 -15.11247 -14.77955 -14.56263 -14.28845 -14.25622 -14.15816 -14.01060 -13.97219 -13.62126 -13.42267 -13.30491 -13.23123 -12.85094 -12.68200 -12.65329 -12.54933 -12.41280 -12.19717 -12.15602 -11.97057 -11.95000 -11.58607 -11.38211 -11.08606 -11.03021 -10.47906 -10.19852 -9.58425 -9.57178 -9.26316 -8.68430 -5.51299 0.09891 0.35648 1.36044 1.39764 1.47195 1.66430 1.93299 2.52219 2.60548 2.67110 2.96920 3.20624 3.36267 3.40102 3.50360 3.63812 3.75274 3.77339 3.88020 3.96660 4.03949 4.31202 4.36665 4.41591 4.45858 4.55001 4.57860 4.60071 4.61992 4.63243 4.64729 4.68237 4.69924 4.73687 4.78421 4.79333 4.83541 4.87508 4.89402 4.94548 5.05940 5.09965 5.25499 5.27566 5.28327 5.42740 5.47014 5.61058 5.89513 5.91720 5.97657 6.33422 6.65775 7.02082 7.27545 8.20716 8.87435 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013496 B = 0.002811 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.243125 B = 9960.242398 C =10615.356457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.064 4.064 3 C -0.134 4.134 4 C -0.051 4.051 5 C -0.122 4.122 6 C -0.161 4.161 7 C 0.580 3.420 8 O -0.569 6.569 9 N -0.700 5.700 10 C 0.122 3.878 11 H 0.102 0.898 12 C 0.038 3.962 13 O -0.363 6.363 14 C 0.083 3.917 15 C 0.126 3.874 16 N -0.647 5.647 17 C -0.289 4.289 18 H 0.055 0.945 19 C -0.081 4.081 20 N -0.968 5.968 21 Si 1.104 2.896 22 H -0.266 1.266 23 H -0.304 1.304 24 H -0.262 1.262 25 C 0.083 3.917 26 C -0.115 4.115 27 C -0.052 4.052 28 C -0.122 4.122 29 C -0.136 4.136 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.149 0.851 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.414 0.586 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.247 0.753 43 H 0.051 0.949 44 H 0.058 0.942 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.073 0.927 48 H 0.092 0.908 49 H 0.055 0.945 50 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.862 5.331 19.976 30.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.064 4.064 3 C -0.152 4.152 4 C -0.051 4.051 5 C -0.179 4.179 6 C -0.164 4.164 7 C 0.367 3.633 8 O -0.448 6.448 9 N -0.353 5.353 10 C 0.017 3.983 11 H 0.120 0.880 12 C -0.040 4.040 13 O -0.280 6.280 14 C 0.041 3.959 15 C 0.001 3.999 16 N -0.377 5.377 17 C -0.416 4.416 18 H 0.072 0.928 19 C -0.273 4.273 20 N -0.613 5.613 21 Si 0.930 3.070 22 H -0.192 1.192 23 H -0.232 1.232 24 H -0.188 1.188 25 C -0.042 4.042 26 C -0.153 4.153 27 C -0.053 4.053 28 C -0.179 4.179 29 C -0.153 4.153 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.166 0.834 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.252 0.748 38 H 0.096 0.904 39 H 0.123 0.877 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.092 0.908 48 H 0.111 0.889 49 H 0.074 0.926 50 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -23.002 6.266 19.581 30.850 hybrid contribution 1.496 -1.539 0.151 2.152 sum -21.505 4.727 19.731 29.566 Atomic orbital electron populations 1.20899 0.88809 1.04024 1.03480 1.20426 0.97796 0.92592 0.95547 1.21117 0.92498 0.99080 1.02509 1.20062 0.94497 0.93908 0.96652 1.20925 0.99651 0.93773 1.03536 1.19614 0.91492 0.94934 1.10329 1.18490 0.87607 0.73891 0.83287 1.90786 1.70497 1.50984 1.32542 1.45925 1.05980 1.74251 1.09107 1.22468 0.80209 0.96883 0.98763 0.88045 1.24074 0.84070 0.96210 0.99655 1.88794 1.29942 1.58810 1.50485 1.23138 0.96742 0.88995 0.86977 1.22548 0.95142 0.98676 0.83555 1.45741 1.54772 1.29419 1.07781 1.19943 1.32414 1.03101 0.86176 0.92756 1.27060 1.02927 1.07287 0.90070 1.71027 1.42484 1.20207 1.27555 0.83326 0.75452 0.73565 0.74644 1.19168 1.23162 1.18831 1.23347 0.96081 0.91221 0.93527 1.22592 0.96399 0.99738 0.96571 1.20041 0.94530 0.93851 0.96890 1.20907 0.99851 0.94145 1.02952 1.21102 0.92465 0.99138 1.02637 0.89882 0.90429 0.90274 0.83353 0.89460 0.89121 0.93019 0.74843 0.90413 0.87680 0.91992 0.93181 0.94336 0.93103 0.92436 0.89137 0.88951 0.90794 0.88908 0.92564 0.83594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 10.01 71.24 0.71 -0.14 16 2 C -0.06 -0.84 5.89 -19.81 -0.12 -0.96 16 3 C -0.13 -1.91 9.34 22.23 0.21 -1.70 16 4 C -0.05 -0.91 5.91 -19.61 -0.12 -1.02 16 5 C -0.12 -1.86 9.62 71.24 0.69 -1.18 16 6 C -0.16 -3.40 5.63 -20.09 -0.11 -3.51 16 7 C 0.58 14.03 4.19 86.79 0.36 14.39 16 8 O -0.57 -17.93 16.74 -3.89 -0.07 -18.00 16 9 N -0.70 -14.75 5.19 -438.77 -2.28 -17.03 16 10 C 0.12 2.94 3.51 46.39 0.16 3.11 16 11 H 0.10 2.66 7.54 -2.39 -0.02 2.64 16 12 C 0.04 0.92 7.42 72.69 0.54 1.46 16 13 O -0.36 -11.37 11.32 -148.98 -1.69 -13.06 16 14 C 0.08 2.80 1.66 -10.82 -0.02 2.78 16 15 C 0.13 4.98 8.20 83.40 0.68 5.66 16 16 N -0.65 -31.18 3.66 -739.15 -2.70 -33.89 16 17 C -0.29 -16.70 11.08 84.03 0.93 -15.77 16 18 H 0.05 3.38 8.05 -2.91 -0.02 3.35 16 19 C -0.08 -4.83 5.50 84.86 0.47 -4.36 16 20 N -0.97 -62.14 13.70 21.65 0.30 -61.84 16 21 Si 1.10 52.36 25.14 68.60 1.72 54.09 16 22 H -0.27 -11.67 6.11 99.48 0.61 -11.06 16 23 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 24 H -0.26 -10.93 6.63 99.48 0.66 -10.27 16 25 C 0.08 3.38 5.21 83.49 0.44 3.82 16 26 C -0.11 -3.21 6.20 31.40 0.19 -3.01 16 27 C -0.05 -0.99 5.91 -19.61 -0.12 -1.10 16 28 C -0.12 -2.09 9.62 71.24 0.69 -1.41 16 29 C -0.14 -2.02 9.34 22.23 0.21 -1.81 16 30 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.08 0.45 8.08 -2.38 -0.02 0.43 16 32 H 0.08 0.43 8.08 -2.39 -0.02 0.41 16 33 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 34 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.09 1.03 8.09 -2.38 -0.02 1.01 16 36 H 0.05 0.99 7.08 -2.39 -0.02 0.97 16 37 H 0.41 7.32 8.40 -92.71 -0.78 6.54 16 38 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.11 2.40 8.14 -2.38 -0.02 2.38 16 40 H 0.06 2.30 7.91 -2.39 -0.02 2.28 16 41 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 42 H 0.25 15.95 8.73 -92.70 -0.81 15.14 16 43 H 0.05 2.11 7.69 -2.39 -0.02 2.10 16 44 H 0.06 2.27 4.50 -2.39 -0.01 2.26 16 45 H 0.09 2.48 7.45 -2.39 -0.02 2.46 16 46 H 0.09 2.59 7.81 -2.39 -0.02 2.57 16 47 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.09 1.18 8.09 -2.39 -0.02 1.17 16 49 H 0.06 1.09 7.08 -2.39 -0.02 1.07 16 50 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -74.82 399.38 1.07 -73.75 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: -0.01 Total: 20.72 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: 5.80 Total: -4.75 kcal Atomic # 7 Polarization: -108.07 SS G_CDS: -4.68 Total: -112.75 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -1.75 Total: -31.06 kcal Atomic # 14 Polarization: 52.36 SS G_CDS: 1.72 Total: 54.09 kcal Total: -74.82 1.07 -73.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054003615.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.263 kcal (2) G-P(sol) polarization free energy of solvation -74.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds