Wall clock time and date at job start Wed Apr 1 2020 03:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38365 * 119.84748 * 2 1 4 4 C 1.37957 * 120.14075 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.07445 * 180.02562 * 4 3 2 6 6 C 1.39579 * 119.85442 * 359.97438 * 4 3 2 7 7 C 1.47849 * 120.14289 * 179.97438 * 6 4 3 8 8 O 1.21553 * 120.00198 * 90.00272 * 7 6 4 9 9 N 1.34775 * 119.99652 * 269.99346 * 7 6 4 10 10 C 1.46506 * 119.99448 * 180.02562 * 9 7 6 11 11 H 1.08991 * 110.93309 * 328.64746 * 10 9 7 12 12 C 1.55059 * 110.87005 * 92.29597 * 10 9 7 13 13 O 1.44602 * 103.67134 * 81.63785 * 12 10 9 14 14 C 1.42838 * 106.73539 * 39.08793 * 13 12 10 15 15 C 1.52651 * 115.96958 * 202.47275 * 14 13 12 16 16 N 1.47226 * 87.78248 * 218.40974 * 15 14 13 17 17 C 1.36934 * 135.96679 * 206.37814 * 16 15 14 18 18 H 1.07994 * 119.99790 * 6.79208 * 17 16 15 19 19 C 1.38806 * 119.99785 * 186.79848 * 17 16 15 20 20 N 1.31618 * 120.00009 * 172.34863 * 19 17 16 21 21 Si 1.86803 * 120.00254 * 352.33892 * 19 17 16 22 22 H 1.48502 * 109.47309 * 175.35520 * 21 19 17 23 23 H 1.48496 * 109.47078 * 295.35945 * 21 19 17 24 24 H 1.48506 * 109.46928 * 55.35943 * 21 19 17 25 25 C 1.47224 * 88.06286 * 26.63642 * 16 15 14 26 26 C 1.53327 * 108.32652 * 334.30590 * 14 13 12 27 27 C 1.39576 * 119.71006 * 0.24491 * 6 4 3 28 28 C 1.50700 * 120.07303 * 179.72570 * 27 6 4 29 29 C 1.37959 * 119.85451 * 359.52460 * 27 6 4 30 30 H 1.09001 * 109.47217 * 89.99815 * 1 2 3 31 31 H 1.09006 * 109.46468 * 209.99570 * 1 2 3 32 32 H 1.08996 * 109.47289 * 329.99451 * 1 2 3 33 33 H 1.07991 * 119.93301 * 0.02759 * 3 2 1 34 34 H 1.09001 * 109.46929 * 269.98130 * 5 4 3 35 35 H 1.09001 * 109.47075 * 29.97630 * 5 4 3 36 36 H 1.08993 * 109.47162 * 149.98014 * 5 4 3 37 37 H 0.96994 * 120.00410 * 0.02562 * 9 7 6 38 38 H 1.09001 * 110.58363 * 200.18670 * 12 10 9 39 39 H 1.09000 * 110.57996 * 322.94274 * 12 10 9 40 40 H 1.09002 * 113.49761 * 103.68155 * 15 14 13 41 41 H 1.08994 * 113.55696 * 333.14965 * 15 14 13 42 42 H 0.97001 * 119.99965 * 4.88747 * 20 19 17 43 43 H 1.08992 * 113.50197 * 88.09623 * 25 16 15 44 44 H 1.09003 * 113.49748 * 218.63814 * 25 16 15 45 45 H 1.09003 * 110.55948 * 120.19216 * 26 14 13 46 46 H 1.09000 * 110.56499 * 243.03640 * 26 14 13 47 47 H 1.09001 * 109.47352 * 90.00552 * 28 27 6 48 48 H 1.08996 * 109.47189 * 210.00619 * 28 27 6 49 49 H 1.08995 * 109.47132 * 330.00490 * 28 27 6 50 50 H 1.07995 * 119.93015 * 180.22897 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2001 0.0000 4 6 3.5752 1.2072 -0.0005 5 6 4.3237 2.5152 0.0001 6 6 4.2762 0.0002 -0.0005 7 6 5.7547 0.0003 -0.0017 8 8 6.3633 0.0008 1.0505 9 7 6.4276 -0.0003 -1.1694 10 6 7.8927 -0.0007 -1.1705 11 1 8.2829 0.5291 -0.3016 12 6 8.4446 -1.4486 -1.2285 13 8 8.3743 -1.7852 -2.6330 14 6 8.7501 -0.6123 -3.3564 15 6 8.2598 -0.5312 -4.7997 16 7 9.5579 0.0706 -5.1466 17 6 10.0226 0.9166 -6.1179 18 1 9.3308 1.3843 -6.8027 19 6 11.3828 1.1729 -6.2222 20 7 11.8461 1.8626 -7.2430 21 14 12.5558 0.5392 -4.9138 22 1 13.9533 0.8460 -5.3112 23 1 12.2538 1.1976 -3.6175 24 1 12.3927 -0.9301 -4.7725 25 6 10.1387 -0.6408 -3.9960 26 6 8.4440 0.6109 -2.4840 27 6 3.5753 -1.2068 -0.0052 28 6 4.3239 -2.5147 -0.0115 29 6 2.1958 -1.1999 0.0002 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3632 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.6521 2.1333 0.0005 34 1 4.5041 2.8310 -1.0275 35 1 3.7318 3.2723 0.5143 36 1 5.2766 2.3882 0.5137 37 1 5.9420 -0.0004 -2.0090 38 1 9.4763 -1.4798 -0.8780 39 1 7.8204 -2.1205 -0.6393 40 1 7.4166 0.1462 -4.9349 41 1 8.0957 -1.5058 -5.2594 42 1 11.2313 2.2521 -7.8842 43 1 10.4860 -1.6455 -4.2363 44 1 10.8811 -0.0557 -3.4530 45 1 9.3534 1.1795 -2.2893 46 1 7.6917 1.2410 -2.9584 47 1 4.5052 -2.8346 1.0147 48 1 3.7317 -3.2699 -0.5281 49 1 5.2764 -2.3857 -0.5254 50 1 1.6523 -2.1332 0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054003616.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:22 Heat of formation + Delta-G solvation = -0.181478 kcal Electronic energy + Delta-G solvation = -30679.140664 eV Core-core repulsion = 26673.023404 eV Total energy + Delta-G solvation = -4006.117260 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.92411 -40.14195 -38.69838 -36.70838 -34.45632 -33.93642 -33.83666 -32.37893 -30.63440 -28.57565 -28.30194 -27.49427 -27.05929 -25.82067 -25.53468 -22.93139 -21.54459 -21.15576 -21.13499 -20.27581 -19.17396 -17.97863 -17.52041 -16.85075 -16.54464 -15.94312 -15.56299 -15.21040 -14.90493 -14.69051 -14.44655 -14.39600 -14.21320 -13.64583 -13.53213 -13.49823 -13.42842 -13.34734 -13.17324 -12.98432 -12.93659 -12.79555 -12.33641 -12.05552 -11.75314 -11.72191 -11.61287 -11.51618 -11.44718 -11.37028 -11.30270 -10.97099 -10.64757 -10.38811 -10.04971 -9.95557 -9.27354 -9.22849 -8.91287 -8.90839 -8.87836 -8.77183 -7.21081 -6.37235 -3.28613 0.81065 1.03346 2.39658 2.95716 3.31550 3.37118 3.42128 3.61981 3.99940 4.36133 4.38784 4.42410 4.46012 4.55259 4.60139 4.76998 4.85320 4.86434 4.91443 4.95430 5.03943 5.09026 5.19726 5.21076 5.22760 5.32874 5.33318 5.37440 5.43878 5.45959 5.54668 5.58675 5.62694 5.70977 5.81988 5.89774 5.93582 6.03521 6.10569 6.11881 6.15228 6.22580 6.24628 6.27626 6.28980 6.33742 6.50403 6.61464 7.01191 7.25010 7.33886 8.00952 8.18284 8.92091 9.44230 10.29386 11.15607 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018340 B = 0.002603 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.310776 B =10755.307899 C =11079.320758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.064 4.064 3 C -0.130 4.130 4 C -0.041 4.041 5 C -0.124 4.124 6 C -0.135 4.135 7 C 0.571 3.429 8 O -0.535 6.535 9 N -0.706 5.706 10 C 0.106 3.894 11 H 0.108 0.892 12 C 0.038 3.962 13 O -0.357 6.357 14 C 0.056 3.944 15 C 0.134 3.866 16 N -0.620 5.620 17 C -0.304 4.304 18 H 0.084 0.916 19 C -0.023 4.023 20 N -0.932 5.932 21 Si 1.069 2.931 22 H -0.294 1.294 23 H -0.293 1.293 24 H -0.285 1.285 25 C 0.090 3.910 26 C -0.120 4.120 27 C -0.040 4.040 28 C -0.123 4.123 29 C -0.130 4.130 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.127 0.873 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.406 0.594 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.049 0.951 41 H 0.047 0.953 42 H 0.261 0.739 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.095 0.905 46 H 0.089 0.911 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.544 -4.523 17.355 28.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.064 4.064 3 C -0.148 4.148 4 C -0.041 4.041 5 C -0.181 4.181 6 C -0.138 4.138 7 C 0.357 3.643 8 O -0.412 6.412 9 N -0.357 5.357 10 C 0.001 3.999 11 H 0.126 0.874 12 C -0.040 4.040 13 O -0.275 6.275 14 C 0.015 3.985 15 C 0.008 3.992 16 N -0.350 5.350 17 C -0.429 4.429 18 H 0.102 0.898 19 C -0.222 4.222 20 N -0.574 5.574 21 Si 0.902 3.098 22 H -0.221 1.221 23 H -0.222 1.222 24 H -0.212 1.212 25 C -0.036 4.036 26 C -0.158 4.158 27 C -0.040 4.040 28 C -0.179 4.179 29 C -0.148 4.148 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.145 0.855 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.241 0.759 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.114 0.886 46 H 0.107 0.893 47 H 0.095 0.905 48 H 0.092 0.908 49 H 0.088 0.912 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.451 -4.649 18.222 27.055 hybrid contribution -1.788 0.209 -0.840 1.986 sum -21.239 -4.440 17.382 27.801 Atomic orbital electron populations 1.20837 0.90900 1.02967 1.02614 1.20037 0.96219 0.92962 0.97196 1.20820 0.92976 0.97844 1.03174 1.19858 0.93679 0.94017 0.96565 1.20911 1.00421 0.93715 1.03021 1.19613 0.92620 0.93741 1.07822 1.18264 0.86941 0.75222 0.83892 1.90800 1.69542 1.49519 1.31313 1.46034 1.06731 1.74295 1.08668 1.22644 0.79897 0.97351 0.99977 0.87360 1.23948 1.00784 0.95121 0.84148 1.88780 1.88723 1.33845 1.16134 1.23696 0.97862 0.84340 0.92587 1.22349 0.90839 0.96848 0.89194 1.45726 1.05607 1.51525 1.32148 1.20073 0.93619 1.20692 1.08553 0.89799 1.25736 0.95003 1.00398 1.01063 1.70927 1.36402 1.37696 1.12350 0.83713 0.75883 0.75960 0.74287 1.22150 1.22175 1.21215 1.23192 0.94546 0.96880 0.88997 1.22727 1.02837 0.97327 0.92864 1.19858 0.93672 0.94020 0.96481 1.20905 1.00295 0.93737 1.03008 1.20817 0.92974 0.97842 1.03162 0.90811 0.91350 0.91353 0.85538 0.90389 0.90857 0.91102 0.75925 0.91064 0.89135 0.93301 0.93566 0.92858 0.92894 0.92968 0.88620 0.89280 0.90497 0.90789 0.91157 0.85525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 10.01 36.01 0.36 -0.27 16 2 C -0.06 -0.52 5.89 -104.53 -0.62 -1.14 16 3 C -0.13 -1.13 9.34 -39.64 -0.37 -1.50 16 4 C -0.04 -0.41 5.91 -104.22 -0.62 -1.03 16 5 C -0.12 -1.13 9.62 36.01 0.35 -0.78 16 6 C -0.13 -1.54 5.63 -104.97 -0.59 -2.13 16 7 C 0.57 7.28 4.19 -12.33 -0.05 7.23 16 8 O -0.53 -8.52 16.75 5.32 0.09 -8.44 16 9 N -0.71 -8.25 5.14 -52.66 -0.27 -8.52 16 10 C 0.11 1.35 3.51 -65.77 -0.23 1.12 16 11 H 0.11 1.38 7.55 -51.93 -0.39 0.99 16 12 C 0.04 0.50 7.42 38.25 0.28 0.79 16 13 O -0.36 -5.74 11.32 -35.23 -0.40 -6.14 16 14 C 0.06 0.97 1.66 -90.68 -0.15 0.82 16 15 C 0.13 2.63 8.20 -8.03 -0.07 2.56 16 16 N -0.62 -14.99 3.66 -184.62 -0.68 -15.66 16 17 C -0.30 -8.59 11.08 -15.06 -0.17 -8.76 16 18 H 0.08 2.49 8.05 -52.49 -0.42 2.07 16 19 C -0.02 -0.68 5.50 -17.43 -0.10 -0.77 16 20 N -0.93 -29.15 13.70 55.49 0.76 -28.39 16 21 Si 1.07 26.62 25.13 -169.99 -4.27 22.34 16 22 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 23 H -0.29 -6.81 6.63 56.52 0.37 -6.43 16 24 H -0.29 -6.71 6.11 56.52 0.35 -6.37 16 25 C 0.09 1.91 5.21 -7.90 -0.04 1.87 16 26 C -0.12 -1.76 6.11 -25.49 -0.16 -1.91 16 27 C -0.04 -0.41 5.91 -104.23 -0.62 -1.02 16 28 C -0.12 -1.12 9.62 36.01 0.35 -0.78 16 29 C -0.13 -1.13 9.34 -39.64 -0.37 -1.50 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.31 8.08 -51.93 -0.42 -0.10 16 32 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 33 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 36 H 0.07 0.76 7.08 -51.93 -0.37 0.39 16 37 H 0.41 4.35 8.61 -40.82 -0.35 3.99 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.05 0.89 7.91 -51.93 -0.41 0.47 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.26 8.05 8.73 -40.82 -0.36 7.70 16 43 H 0.05 1.16 7.69 -51.93 -0.40 0.76 16 44 H 0.05 1.12 4.50 -51.93 -0.23 0.89 16 45 H 0.10 1.47 7.82 -51.93 -0.41 1.07 16 46 H 0.09 1.26 7.70 -51.93 -0.40 0.86 16 47 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 49 H 0.07 0.72 7.08 -51.93 -0.37 0.35 16 50 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 399.71 15.07 6.02 6.02 Total: -1.00 -33.78 399.71 -9.59 -43.37 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -8.05 Total: 2.63 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -2.80 Total: -7.22 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.19 Total: -52.57 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.31 Total: -14.58 kcal Atomic # 14 Polarization: 26.62 SS G_CDS: -4.27 Total: 22.34 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.78 -9.59 -43.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054003616.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.192 kcal (2) G-P(sol) polarization free energy of solvation -33.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds