Wall clock time and date at job start Wed Apr 1 2020 03:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38365 * 119.84748 * 2 1 4 4 C 1.37957 * 120.14075 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.07445 * 180.02562 * 4 3 2 6 6 C 1.39579 * 119.85442 * 359.97438 * 4 3 2 7 7 C 1.47849 * 120.14289 * 179.97438 * 6 4 3 8 8 O 1.21553 * 120.00198 * 90.00272 * 7 6 4 9 9 N 1.34775 * 119.99652 * 269.99346 * 7 6 4 10 10 C 1.46506 * 119.99448 * 180.02562 * 9 7 6 11 11 H 1.08991 * 110.93309 * 328.64746 * 10 9 7 12 12 C 1.55059 * 110.87005 * 92.29597 * 10 9 7 13 13 O 1.44602 * 103.67134 * 81.63785 * 12 10 9 14 14 C 1.42838 * 106.73539 * 39.08793 * 13 12 10 15 15 C 1.52651 * 115.96958 * 202.47275 * 14 13 12 16 16 N 1.47226 * 87.78248 * 218.40974 * 15 14 13 17 17 C 1.36934 * 135.96679 * 206.37814 * 16 15 14 18 18 H 1.07994 * 119.99790 * 6.79208 * 17 16 15 19 19 C 1.38806 * 119.99785 * 186.79848 * 17 16 15 20 20 N 1.31618 * 120.00009 * 172.34863 * 19 17 16 21 21 Si 1.86803 * 120.00254 * 352.33892 * 19 17 16 22 22 H 1.48502 * 109.47309 * 175.35520 * 21 19 17 23 23 H 1.48496 * 109.47078 * 295.35945 * 21 19 17 24 24 H 1.48506 * 109.46928 * 55.35943 * 21 19 17 25 25 C 1.47224 * 88.06286 * 26.63642 * 16 15 14 26 26 C 1.53327 * 108.32652 * 334.30590 * 14 13 12 27 27 C 1.39576 * 119.71006 * 0.24491 * 6 4 3 28 28 C 1.50700 * 120.07303 * 179.72570 * 27 6 4 29 29 C 1.37959 * 119.85451 * 359.52460 * 27 6 4 30 30 H 1.09001 * 109.47217 * 89.99815 * 1 2 3 31 31 H 1.09006 * 109.46468 * 209.99570 * 1 2 3 32 32 H 1.08996 * 109.47289 * 329.99451 * 1 2 3 33 33 H 1.07991 * 119.93301 * 0.02759 * 3 2 1 34 34 H 1.09001 * 109.46929 * 269.98130 * 5 4 3 35 35 H 1.09001 * 109.47075 * 29.97630 * 5 4 3 36 36 H 1.08993 * 109.47162 * 149.98014 * 5 4 3 37 37 H 0.96994 * 120.00410 * 0.02562 * 9 7 6 38 38 H 1.09001 * 110.58363 * 200.18670 * 12 10 9 39 39 H 1.09000 * 110.57996 * 322.94274 * 12 10 9 40 40 H 1.09002 * 113.49761 * 103.68155 * 15 14 13 41 41 H 1.08994 * 113.55696 * 333.14965 * 15 14 13 42 42 H 0.97001 * 119.99965 * 4.88747 * 20 19 17 43 43 H 1.08992 * 113.50197 * 88.09623 * 25 16 15 44 44 H 1.09003 * 113.49748 * 218.63814 * 25 16 15 45 45 H 1.09003 * 110.55948 * 120.19216 * 26 14 13 46 46 H 1.09000 * 110.56499 * 243.03640 * 26 14 13 47 47 H 1.09001 * 109.47352 * 90.00552 * 28 27 6 48 48 H 1.08996 * 109.47189 * 210.00619 * 28 27 6 49 49 H 1.08995 * 109.47132 * 330.00490 * 28 27 6 50 50 H 1.07995 * 119.93015 * 180.22897 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2001 0.0000 4 6 3.5752 1.2072 -0.0005 5 6 4.3237 2.5152 0.0001 6 6 4.2762 0.0002 -0.0005 7 6 5.7547 0.0003 -0.0017 8 8 6.3633 0.0008 1.0505 9 7 6.4276 -0.0003 -1.1694 10 6 7.8927 -0.0007 -1.1705 11 1 8.2829 0.5291 -0.3016 12 6 8.4446 -1.4486 -1.2285 13 8 8.3743 -1.7852 -2.6330 14 6 8.7501 -0.6123 -3.3564 15 6 8.2598 -0.5312 -4.7997 16 7 9.5579 0.0706 -5.1466 17 6 10.0226 0.9166 -6.1179 18 1 9.3308 1.3843 -6.8027 19 6 11.3828 1.1729 -6.2222 20 7 11.8461 1.8626 -7.2430 21 14 12.5558 0.5392 -4.9138 22 1 13.9533 0.8460 -5.3112 23 1 12.2538 1.1976 -3.6175 24 1 12.3927 -0.9301 -4.7725 25 6 10.1387 -0.6408 -3.9960 26 6 8.4440 0.6109 -2.4840 27 6 3.5753 -1.2068 -0.0052 28 6 4.3239 -2.5147 -0.0115 29 6 2.1958 -1.1999 0.0002 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3632 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.6521 2.1333 0.0005 34 1 4.5041 2.8310 -1.0275 35 1 3.7318 3.2723 0.5143 36 1 5.2766 2.3882 0.5137 37 1 5.9420 -0.0004 -2.0090 38 1 9.4763 -1.4798 -0.8780 39 1 7.8204 -2.1205 -0.6393 40 1 7.4166 0.1462 -4.9349 41 1 8.0957 -1.5058 -5.2594 42 1 11.2313 2.2521 -7.8842 43 1 10.4860 -1.6455 -4.2363 44 1 10.8811 -0.0557 -3.4530 45 1 9.3534 1.1795 -2.2893 46 1 7.6917 1.2410 -2.9584 47 1 4.5052 -2.8346 1.0147 48 1 3.7317 -3.2699 -0.5281 49 1 5.2764 -2.3857 -0.5254 50 1 1.6523 -2.1332 0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054003616.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:21 Heat of formation + Delta-G solvation = -22.586604 kcal Electronic energy + Delta-G solvation = -30680.112223 eV Core-core repulsion = 26673.023404 eV Total energy + Delta-G solvation = -4007.088819 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.01897 -41.24366 -39.64874 -38.17485 -35.57542 -34.62232 -34.53660 -34.48692 -31.77996 -30.21789 -28.91954 -28.26238 -27.71934 -27.38115 -27.14686 -23.85683 -23.34650 -22.13427 -21.81902 -21.14736 -20.75497 -19.52842 -18.85758 -17.99423 -17.53701 -17.27190 -16.62343 -16.56231 -16.24349 -15.75837 -15.53987 -15.30368 -15.13462 -15.10747 -14.98584 -14.44991 -14.30775 -14.15659 -14.02135 -13.98726 -13.86986 -13.62245 -13.40966 -13.30489 -12.98218 -12.81347 -12.71497 -12.65262 -12.44139 -12.37283 -12.29518 -12.17846 -12.07630 -11.95586 -11.67214 -11.36627 -11.03477 -11.01848 -10.54960 -10.06912 -9.58418 -9.56699 -9.25061 -8.67444 -5.50386 0.10535 0.35608 1.37317 1.42503 1.46685 1.65702 2.02811 2.51634 2.61586 2.65297 2.96511 3.21590 3.40165 3.42976 3.51568 3.65114 3.75449 3.78149 3.87764 3.90837 4.26250 4.31044 4.36760 4.43273 4.45572 4.55220 4.59001 4.60403 4.62237 4.63217 4.64954 4.66998 4.68995 4.72451 4.76062 4.79783 4.87146 4.87603 4.94220 4.96263 5.05595 5.11709 5.25706 5.27107 5.32885 5.42906 5.47441 5.60887 5.91392 5.93645 5.97850 6.37536 6.66522 7.04713 7.28497 8.21728 8.88364 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018340 B = 0.002603 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.310776 B =10755.307899 C =11079.320758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.064 4.064 3 C -0.135 4.135 4 C -0.053 4.053 5 C -0.121 4.121 6 C -0.160 4.160 7 C 0.579 3.421 8 O -0.571 6.571 9 N -0.699 5.699 10 C 0.117 3.883 11 H 0.112 0.888 12 C 0.036 3.964 13 O -0.362 6.362 14 C 0.083 3.917 15 C 0.131 3.869 16 N -0.647 5.647 17 C -0.287 4.287 18 H 0.057 0.943 19 C -0.082 4.082 20 N -0.968 5.968 21 Si 1.103 2.897 22 H -0.305 1.305 23 H -0.266 1.266 24 H -0.266 1.266 25 C 0.079 3.921 26 C -0.116 4.116 27 C -0.052 4.052 28 C -0.121 4.121 29 C -0.135 4.135 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.147 0.853 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.049 0.951 37 H 0.412 0.588 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.064 0.936 41 H 0.049 0.951 42 H 0.248 0.752 43 H 0.050 0.950 44 H 0.054 0.946 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.075 0.925 48 H 0.092 0.908 49 H 0.056 0.944 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.808 -5.465 19.459 31.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.064 4.064 3 C -0.153 4.153 4 C -0.054 4.054 5 C -0.178 4.178 6 C -0.163 4.163 7 C 0.366 3.634 8 O -0.450 6.450 9 N -0.349 5.349 10 C 0.012 3.988 11 H 0.130 0.870 12 C -0.042 4.042 13 O -0.280 6.280 14 C 0.042 3.958 15 C 0.005 3.995 16 N -0.377 5.377 17 C -0.414 4.414 18 H 0.075 0.925 19 C -0.274 4.274 20 N -0.614 5.614 21 Si 0.930 3.070 22 H -0.233 1.233 23 H -0.192 1.192 24 H -0.191 1.191 25 C -0.046 4.046 26 C -0.154 4.154 27 C -0.052 4.052 28 C -0.177 4.177 29 C -0.153 4.153 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.165 0.835 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.068 0.932 37 H 0.248 0.752 38 H 0.102 0.898 39 H 0.120 0.880 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.111 0.889 46 H 0.114 0.886 47 H 0.093 0.907 48 H 0.111 0.889 49 H 0.075 0.925 50 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -21.777 -5.619 20.340 30.324 hybrid contribution -1.266 0.451 -1.502 2.016 sum -23.044 -5.168 18.838 30.209 Atomic orbital electron populations 1.20898 0.88787 1.04028 1.03466 1.20422 0.97797 0.92565 0.95619 1.21105 0.92470 0.99106 1.02625 1.20052 0.94532 0.93886 0.96887 1.20900 0.99607 0.93966 1.03307 1.19640 0.91694 0.94876 1.10093 1.18460 0.87569 0.74024 0.83321 1.90773 1.70436 1.51314 1.32523 1.45964 1.06325 1.73777 1.08842 1.22490 0.80424 0.96902 0.98976 0.87010 1.24141 1.01945 0.95502 0.82582 1.88775 1.88375 1.33204 1.17603 1.23190 0.94634 0.85922 0.92088 1.22512 0.89528 0.96797 0.90640 1.45738 1.08187 1.51609 1.32193 1.19937 0.93164 1.20079 1.08238 0.92542 1.26981 0.97199 1.00875 1.02313 1.71026 1.36375 1.40186 1.13786 0.83324 0.73465 0.76918 0.73326 1.23286 1.19244 1.19135 1.23373 0.96812 0.96114 0.88305 1.22683 1.03095 0.96293 0.93289 1.20056 0.94525 0.93890 0.96766 1.20903 0.99888 0.93970 1.02971 1.21109 0.92478 0.99099 1.02564 0.89905 0.90313 0.90365 0.83535 0.89828 0.89178 0.93157 0.75222 0.89787 0.88040 0.91791 0.93316 0.94288 0.93220 0.92780 0.88892 0.88630 0.90666 0.88925 0.92501 0.83455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.01 71.24 0.71 -0.17 16 2 C -0.06 -0.88 5.89 -19.81 -0.12 -1.00 16 3 C -0.14 -2.05 9.34 22.23 0.21 -1.85 16 4 C -0.05 -1.01 5.91 -19.61 -0.12 -1.13 16 5 C -0.12 -2.08 9.62 71.24 0.69 -1.39 16 6 C -0.16 -3.49 5.63 -20.09 -0.11 -3.61 16 7 C 0.58 14.28 4.19 86.79 0.36 14.65 16 8 O -0.57 -17.94 16.75 -3.88 -0.07 -18.01 16 9 N -0.70 -15.30 5.14 -438.79 -2.26 -17.55 16 10 C 0.12 2.75 3.51 46.39 0.16 2.92 16 11 H 0.11 2.65 7.55 -2.39 -0.02 2.63 16 12 C 0.04 0.86 7.42 72.69 0.54 1.39 16 13 O -0.36 -10.72 11.32 -148.98 -1.69 -12.41 16 14 C 0.08 2.70 1.66 -10.83 -0.02 2.68 16 15 C 0.13 4.92 8.20 83.40 0.68 5.60 16 16 N -0.65 -30.79 3.66 -739.13 -2.70 -33.49 16 17 C -0.29 -16.46 11.08 84.03 0.93 -15.53 16 18 H 0.06 3.47 8.05 -2.91 -0.02 3.44 16 19 C -0.08 -4.85 5.50 84.86 0.47 -4.39 16 20 N -0.97 -62.35 13.70 21.65 0.30 -62.06 16 21 Si 1.10 53.34 25.13 68.60 1.72 55.07 16 22 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 23 H -0.27 -11.55 6.63 99.48 0.66 -10.89 16 24 H -0.27 -11.87 6.11 99.48 0.61 -11.26 16 25 C 0.08 3.22 5.21 83.49 0.44 3.65 16 26 C -0.12 -3.16 6.11 31.40 0.19 -2.97 16 27 C -0.05 -0.98 5.91 -19.61 -0.12 -1.10 16 28 C -0.12 -2.03 9.62 71.24 0.69 -1.35 16 29 C -0.13 -2.03 9.34 22.23 0.21 -1.82 16 30 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.08 0.46 8.08 -2.38 -0.02 0.44 16 32 H 0.08 0.46 8.08 -2.39 -0.02 0.44 16 33 H 0.15 1.54 8.06 -2.92 -0.02 1.51 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.18 8.09 -2.39 -0.02 1.16 16 36 H 0.05 1.06 7.08 -2.39 -0.02 1.05 16 37 H 0.41 8.14 8.61 -92.71 -0.80 7.34 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.06 2.21 7.91 -2.39 -0.02 2.19 16 41 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.25 15.96 8.73 -92.71 -0.81 15.15 16 43 H 0.05 2.07 7.69 -2.39 -0.02 2.05 16 44 H 0.05 2.19 4.50 -2.39 -0.01 2.18 16 45 H 0.09 2.66 7.82 -2.39 -0.02 2.64 16 46 H 0.10 2.51 7.70 -2.39 -0.02 2.49 16 47 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.09 1.15 8.09 -2.39 -0.02 1.13 16 49 H 0.06 1.09 7.08 -2.39 -0.02 1.07 16 50 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -74.17 399.71 1.07 -73.11 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -0.03 Total: 20.73 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 5.79 Total: -5.38 kcal Atomic # 7 Polarization: -108.44 SS G_CDS: -4.66 Total: -113.10 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -1.75 Total: -30.42 kcal Atomic # 14 Polarization: 53.34 SS G_CDS: 1.72 Total: 55.07 kcal Total: -74.17 1.07 -73.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054003616.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.519 kcal (2) G-P(sol) polarization free energy of solvation -74.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds