Wall clock time and date at job start Wed Apr 1 2020 04:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38256 * 120.00240 * 2 1 4 4 C 1.38209 * 120.00245 * 180.02562 * 3 2 1 5 5 C 1.38263 * 119.99700 * 359.97438 * 4 3 2 6 6 C 1.38214 * 120.00127 * 359.96068 * 5 4 3 7 7 C 1.38215 * 119.99816 * 179.90022 * 2 1 3 8 8 C 1.50705 * 119.99977 * 0.05134 * 7 2 1 9 9 H 1.09004 * 109.46996 * 5.62644 * 8 7 2 10 10 C 1.52999 * 109.46922 * 125.62587 * 8 7 2 11 11 C 1.50700 * 109.46898 * 245.62831 * 8 7 2 12 12 O 1.21282 * 120.00104 * 0.02562 * 11 8 7 13 13 N 1.34775 * 119.99603 * 179.97438 * 11 8 7 14 14 C 1.46507 * 119.99768 * 180.02562 * 13 11 8 15 15 H 1.09000 * 110.45228 * 32.39648 * 14 13 11 16 16 C 1.54546 * 110.50796 * 269.65563 * 14 13 11 17 17 O 1.44635 * 105.03381 * 217.71838 * 16 14 13 18 18 C 1.43254 * 105.21835 * 39.02605 * 17 16 14 19 19 C 1.52887 * 115.83539 * 90.92481 * 18 17 16 20 20 N 1.47793 * 85.78166 * 94.51087 * 19 18 17 21 21 C 1.36932 * 134.40246 * 203.87388 * 20 19 18 22 22 H 1.07996 * 120.00281 * 179.97438 * 21 20 19 23 23 C 1.38820 * 119.99954 * 359.97438 * 21 20 19 24 24 N 1.31617 * 119.99863 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99877 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46819 * 90.00291 * 25 23 21 27 27 H 1.48502 * 109.46852 * 210.00085 * 25 23 21 28 28 H 1.48493 * 109.47384 * 330.00012 * 25 23 21 29 29 C 1.47782 * 91.19569 * 23.86853 * 20 19 18 30 30 C 1.53465 * 106.26010 * 321.06335 * 18 17 16 31 31 H 1.08998 * 109.46946 * 95.80217 * 1 2 3 32 32 H 1.08998 * 109.47119 * 215.80885 * 1 2 3 33 33 H 1.08998 * 109.46638 * 335.80530 * 1 2 3 34 34 H 1.08002 * 119.99631 * 0.26837 * 3 2 1 35 35 H 1.07994 * 120.00246 * 179.97438 * 4 3 2 36 36 H 1.08003 * 119.99760 * 179.97438 * 5 4 3 37 37 H 1.07998 * 119.99929 * 180.02562 * 6 5 4 38 38 H 1.09010 * 109.46961 * 179.97438 * 10 8 7 39 39 H 1.08991 * 109.47474 * 299.99499 * 10 8 7 40 40 H 1.09003 * 109.46772 * 60.00461 * 10 8 7 41 41 H 0.96996 * 120.00653 * 359.97438 * 13 11 8 42 42 H 1.09004 * 110.33000 * 336.61050 * 16 14 13 43 43 H 1.09003 * 110.33357 * 98.82730 * 16 14 13 44 44 H 1.08993 * 113.82176 * 208.71983 * 19 18 17 45 45 H 1.08993 * 113.82532 * 340.29446 * 19 18 17 46 46 H 0.97005 * 119.99814 * 179.97438 * 24 23 21 47 47 H 1.09001 * 113.82452 * 221.90805 * 29 20 19 48 48 H 1.09007 * 113.92989 * 90.35469 * 29 20 19 49 49 H 1.09000 * 110.57447 * 264.15600 * 30 18 17 50 50 H 1.09003 * 110.69902 * 141.34018 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 3.5806 -1.1971 0.0008 7 6 2.1981 -1.1970 0.0021 8 6 1.4445 -2.5021 0.0032 9 1 0.3772 -2.3055 -0.0987 10 6 1.9181 -3.3654 -1.1679 11 6 1.7001 -3.2286 1.2985 12 8 2.4226 -2.7350 2.1383 13 7 1.1249 -4.4264 1.5242 14 6 1.3730 -5.1324 2.7837 15 1 1.5149 -4.4212 3.5974 16 6 2.6017 -6.0604 2.6513 17 8 2.2624 -7.2429 3.4120 18 6 0.8748 -7.4772 3.1439 19 6 0.5707 -8.3929 1.9580 20 7 0.5028 -9.4811 2.9558 21 6 0.6647 -10.8398 2.9041 22 1 0.5605 -11.4306 3.8022 23 6 0.9626 -11.4580 1.6974 24 7 1.0900 -10.7379 0.6030 25 14 1.1841 -13.3115 1.6271 26 1 -0.1246 -13.9561 1.3495 27 1 2.1439 -13.6546 0.5472 28 1 1.7089 -13.7970 2.9286 29 6 0.1907 -8.5171 4.0315 30 6 0.2059 -6.0966 3.1036 31 1 -0.3633 -0.1039 -1.0224 32 1 -0.3633 -0.8334 0.6013 33 1 -0.3632 0.9374 0.4212 34 1 1.6584 2.1326 0.0044 35 1 4.1205 2.1325 -0.0010 36 1 5.3517 -0.0001 -0.0014 37 1 4.1206 -2.1324 0.0012 38 1 1.3733 -4.3096 -1.1668 39 1 1.7332 -2.8400 -2.1047 40 1 2.9854 -3.5620 -1.0659 41 1 0.5462 -4.8207 0.8530 42 1 2.7707 -6.3182 1.6058 43 1 3.4857 -5.5806 3.0714 44 1 -0.3816 -8.1817 1.4716 45 1 1.3974 -8.4915 1.2545 46 1 1.2986 -11.1699 -0.2402 47 1 0.7173 -8.7137 4.9654 48 1 -0.8759 -8.3421 4.1726 49 1 -0.2353 -5.8563 4.0710 50 1 -0.5497 -6.0573 2.3189 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054014064.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:48 Heat of formation + Delta-G solvation = 2.344531 kcal Electronic energy + Delta-G solvation = -30329.794874 eV Core-core repulsion = 26323.787150 eV Total energy + Delta-G solvation = -4006.007724 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.73084 -39.88318 -38.74581 -36.13563 -34.57489 -34.31669 -32.86030 -32.09080 -30.56867 -29.42707 -28.02525 -27.04987 -25.87263 -25.06804 -24.91064 -22.82210 -22.03292 -21.48359 -20.79223 -19.98727 -19.04279 -17.29876 -16.97097 -16.73588 -16.21103 -15.76039 -15.26846 -15.09912 -15.05699 -14.85042 -14.62768 -14.23835 -13.98328 -13.86946 -13.63362 -13.26653 -13.13032 -13.00510 -12.77352 -12.70452 -12.58827 -12.35482 -12.14129 -12.05103 -11.84032 -11.66394 -11.53546 -11.16330 -11.11414 -11.08042 -10.91385 -10.83753 -10.44550 -10.27950 -9.83514 -9.75668 -9.52648 -9.09746 -8.91769 -8.87874 -8.80219 -8.73975 -6.88602 -5.75936 -3.07255 1.16759 1.27362 2.55966 3.05917 3.40160 3.45086 3.47226 3.65181 4.30329 4.30935 4.46641 4.48398 4.64146 4.72611 4.75476 4.86309 4.94621 4.97287 5.00845 5.06957 5.15379 5.23548 5.30189 5.36182 5.39167 5.40726 5.44210 5.49401 5.56994 5.60214 5.63588 5.84620 5.84750 5.91164 5.95414 6.00737 6.04765 6.08616 6.31921 6.34675 6.37697 6.40438 6.47504 6.52064 6.58140 6.85954 6.93949 7.17501 7.43849 7.47909 7.65289 7.98372 8.16238 9.05093 9.71544 10.58131 11.41625 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021791 B = 0.002213 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.632789 B =12648.805048 C =12944.928304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.080 4.080 3 C -0.124 4.124 4 C -0.118 4.118 5 C -0.127 4.127 6 C -0.084 4.084 7 C -0.063 4.063 8 C -0.077 4.077 9 H 0.108 0.892 10 C -0.143 4.143 11 C 0.518 3.482 12 O -0.531 6.531 13 N -0.717 5.717 14 C 0.114 3.886 15 H 0.100 0.900 16 C 0.038 3.962 17 O -0.335 6.335 18 C 0.055 3.945 19 C 0.153 3.847 20 N -0.605 5.605 21 C -0.218 4.218 22 H 0.080 0.920 23 C -0.009 4.009 24 N -0.923 5.923 25 Si 0.913 3.087 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.280 1.280 29 C 0.129 3.871 30 C -0.147 4.147 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.403 0.597 42 H 0.062 0.938 43 H 0.089 0.911 44 H 0.034 0.966 45 H 0.077 0.923 46 H 0.253 0.747 47 H 0.053 0.947 48 H 0.048 0.952 49 H 0.083 0.917 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.959 24.164 -4.000 24.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.080 4.080 3 C -0.142 4.142 4 C -0.136 4.136 5 C -0.145 4.145 6 C -0.102 4.102 7 C -0.063 4.063 8 C -0.098 4.098 9 H 0.126 0.874 10 C -0.201 4.201 11 C 0.304 3.696 12 O -0.407 6.407 13 N -0.370 5.370 14 C 0.009 3.991 15 H 0.118 0.882 16 C -0.040 4.040 17 O -0.252 6.252 18 C 0.014 3.986 19 C 0.028 3.972 20 N -0.331 5.331 21 C -0.346 4.346 22 H 0.098 0.902 23 C -0.205 4.205 24 N -0.571 5.571 25 Si 0.743 3.257 26 H -0.217 1.217 27 H -0.216 1.216 28 H -0.206 1.206 29 C 0.003 3.997 30 C -0.186 4.186 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.238 0.762 42 H 0.081 0.919 43 H 0.107 0.893 44 H 0.051 0.949 45 H 0.095 0.905 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.065 0.935 49 H 0.102 0.898 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.212 24.045 -3.382 24.282 hybrid contribution -0.304 -1.100 -0.569 1.275 sum -0.516 22.945 -3.951 23.289 Atomic orbital electron populations 1.20857 0.91441 1.02882 1.02318 1.19713 0.95839 0.92593 0.99823 1.20941 0.94281 0.97147 1.01839 1.21100 0.94304 0.97955 1.00228 1.21093 0.99828 0.92464 1.01087 1.20913 0.93486 0.98150 0.97653 1.19118 0.93565 0.92622 1.01026 1.20401 1.02042 0.93387 0.93995 0.87368 1.21827 1.02456 0.99225 0.96570 1.20503 0.79773 0.80906 0.88448 1.90723 1.36817 1.66684 1.46456 1.46089 1.50705 1.20278 1.19944 1.22422 0.95722 0.94309 0.86648 0.88213 1.23778 0.97217 0.85692 0.97311 1.89039 1.24736 1.44231 1.67244 1.23760 0.82084 0.91951 1.00784 1.22582 0.99032 0.83610 0.91990 1.45837 1.81460 1.01974 1.03846 1.19009 1.40830 0.80230 0.94520 0.90175 1.24764 1.02294 0.98073 0.95386 1.69805 1.54729 1.33849 0.98670 0.86104 0.77462 0.84869 0.77254 1.21665 1.21640 1.20595 1.22518 0.96248 0.87112 0.93853 1.23028 0.97435 0.95064 1.03058 0.90987 0.91373 0.91475 0.86252 0.86308 0.86210 0.86266 0.91247 0.91141 0.91662 0.76185 0.91942 0.89277 0.94881 0.90479 0.93740 0.92884 0.93464 0.89846 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.14 36.01 0.33 -0.53 16 2 C -0.08 -0.77 5.88 -104.62 -0.62 -1.39 16 3 C -0.12 -1.14 9.68 -39.59 -0.38 -1.52 16 4 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 5 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 6 C -0.08 -0.94 8.24 -39.58 -0.33 -1.26 16 7 C -0.06 -0.67 4.31 -104.62 -0.45 -1.12 16 8 C -0.08 -0.72 2.63 -92.92 -0.24 -0.96 16 9 H 0.11 0.81 5.72 -51.93 -0.30 0.51 16 10 C -0.14 -1.16 8.84 37.16 0.33 -0.83 16 11 C 0.52 6.29 7.05 -10.99 -0.08 6.21 16 12 O -0.53 -8.43 15.05 5.56 0.08 -8.35 16 13 N -0.72 -8.10 4.98 -52.14 -0.26 -8.36 16 14 C 0.11 1.54 3.49 -66.21 -0.23 1.31 16 15 H 0.10 1.41 7.55 -51.93 -0.39 1.02 16 16 C 0.04 0.62 7.37 37.97 0.28 0.90 16 17 O -0.33 -6.77 11.44 -35.23 -0.40 -7.18 16 18 C 0.06 1.05 1.28 -90.66 -0.12 0.93 16 19 C 0.15 3.53 6.99 -3.39 -0.02 3.51 16 20 N -0.61 -15.76 3.71 -183.57 -0.68 -16.44 16 21 C -0.22 -6.24 10.70 -15.06 -0.16 -6.40 16 22 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 24 N -0.92 -27.37 11.40 55.49 0.63 -26.74 16 25 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 29 C 0.13 2.66 8.47 -3.40 -0.03 2.64 16 30 C -0.15 -2.03 6.24 -25.58 -0.16 -2.19 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.49 6.54 -51.93 -0.34 0.15 16 33 H 0.07 0.42 8.05 -51.93 -0.42 0.00 16 34 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 35 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 37 H 0.12 1.32 7.24 -52.49 -0.38 0.94 16 38 H 0.07 0.51 7.57 -51.92 -0.39 0.11 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.58 7.09 -51.93 -0.37 0.21 16 41 H 0.40 3.75 7.80 -40.82 -0.32 3.43 16 42 H 0.06 1.03 8.06 -51.93 -0.42 0.61 16 43 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.03 0.74 7.96 -51.93 -0.41 0.33 16 45 H 0.08 2.01 7.20 -51.93 -0.37 1.63 16 46 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 47 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 49 H 0.08 1.05 8.12 -51.93 -0.42 0.62 16 50 H 0.08 1.03 7.40 -51.93 -0.38 0.65 16 LS Contribution 400.68 15.07 6.04 6.04 Total: -1.00 -34.89 400.68 -10.23 -45.12 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -7.85 Total: 2.74 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -2.77 Total: -4.19 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -0.31 Total: -51.54 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.32 Total: -15.52 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.89 -10.23 -45.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054014064.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.465 kcal (2) G-P(sol) polarization free energy of solvation -34.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds