Wall clock time and date at job start Wed Apr 1 2020 04:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38254 * 119.99929 * 2 1 4 4 C 1.38220 * 119.99663 * 180.23300 * 3 2 1 5 5 C 1.38255 * 119.99699 * 359.81358 * 4 3 2 6 6 C 1.38204 * 120.00556 * 359.97438 * 5 4 3 7 7 C 1.38216 * 119.99671 * 179.79629 * 2 1 3 8 8 C 1.50701 * 119.99875 * 359.97438 * 7 2 1 9 9 H 1.08993 * 109.47356 * 353.92192 * 8 7 2 10 10 C 1.52999 * 109.46640 * 233.92303 * 8 7 2 11 11 C 1.50702 * 109.47003 * 113.92520 * 8 7 2 12 12 O 1.21275 * 119.99832 * 359.97438 * 11 8 7 13 13 N 1.34773 * 119.99662 * 179.97438 * 11 8 7 14 14 C 1.46506 * 120.00117 * 179.97438 * 13 11 8 15 15 H 1.09006 * 110.45015 * 32.40410 * 14 13 11 16 16 C 1.54547 * 110.51097 * 269.65820 * 14 13 11 17 17 O 1.44628 * 105.03357 * 217.72000 * 16 14 13 18 18 C 1.43238 * 105.22544 * 39.02196 * 17 16 14 19 19 C 1.52892 * 115.83454 * 90.92649 * 18 17 16 20 20 N 1.47782 * 85.78105 * 94.51402 * 19 18 17 21 21 C 1.36939 * 134.40145 * 203.86915 * 20 19 18 22 22 H 1.07998 * 120.00080 * 180.02562 * 21 20 19 23 23 C 1.38813 * 119.99760 * 0.02562 * 21 20 19 24 24 N 1.31617 * 120.00235 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00048 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46716 * 59.99872 * 25 23 21 27 27 H 1.48496 * 109.47162 * 180.02562 * 25 23 21 28 28 H 1.48495 * 109.47082 * 300.00475 * 25 23 21 29 29 C 1.47778 * 91.19557 * 23.87402 * 20 19 18 30 30 C 1.53470 * 106.26447 * 321.07009 * 18 17 16 31 31 H 1.08997 * 109.46955 * 264.47856 * 1 2 3 32 32 H 1.09004 * 109.46394 * 24.47932 * 1 2 3 33 33 H 1.08993 * 109.47094 * 144.47964 * 1 2 3 34 34 H 1.08001 * 120.00594 * 0.07019 * 3 2 1 35 35 H 1.07997 * 119.99759 * 179.83847 * 4 3 2 36 36 H 1.08001 * 119.99477 * 179.97438 * 5 4 3 37 37 H 1.07997 * 120.00774 * 179.97438 * 6 5 4 38 38 H 1.08994 * 109.47427 * 60.00083 * 10 8 7 39 39 H 1.09000 * 109.46921 * 180.02562 * 10 8 7 40 40 H 1.09003 * 109.47136 * 300.00011 * 10 8 7 41 41 H 0.96996 * 120.00507 * 0.02562 * 13 11 8 42 42 H 1.09001 * 110.32872 * 336.60710 * 16 14 13 43 43 H 1.09006 * 110.33018 * 98.82457 * 16 14 13 44 44 H 1.09002 * 113.82062 * 208.72551 * 19 18 17 45 45 H 1.08993 * 113.82315 * 340.29695 * 19 18 17 46 46 H 0.97001 * 120.00118 * 180.02562 * 24 23 21 47 47 H 1.09007 * 113.82103 * 221.90807 * 29 20 19 48 48 H 1.09003 * 113.93424 * 90.36028 * 29 20 19 49 49 H 1.09004 * 110.57033 * 264.15549 * 30 18 17 50 50 H 1.09000 * 110.70698 * 141.33359 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2717 -0.0001 -0.0058 6 6 3.5807 -1.1970 -0.0014 7 6 2.1981 -1.1970 0.0043 8 6 1.4445 -2.5021 0.0095 9 1 0.3780 -2.3053 0.1180 10 6 1.9256 -3.3640 1.1785 11 6 1.6918 -3.2301 -1.2866 12 8 2.4089 -2.7375 -2.1315 13 7 1.1160 -4.4286 -1.5067 14 6 1.3559 -5.1362 -2.7670 15 1 2.3588 -4.9243 -3.1378 16 6 0.2928 -4.7452 -3.8184 17 8 0.0139 -5.9661 -4.5418 18 6 0.0190 -7.0002 -3.5506 19 6 -1.3309 -7.3085 -2.9025 20 7 -1.4567 -8.3682 -3.9249 21 6 -2.5120 -9.0266 -4.4976 22 1 -2.3336 -9.7848 -5.2458 23 6 -3.8110 -8.7195 -4.1165 24 7 -4.0283 -7.7959 -3.2044 25 14 -5.2506 -9.6172 -4.8983 26 1 -5.1320 -11.0726 -4.6282 27 1 -6.5220 -9.1086 -4.3238 28 1 -5.2422 -9.3837 -6.3647 29 6 0.0113 -8.4335 -4.0822 30 6 1.1576 -6.6593 -2.5797 31 1 -0.3633 -0.0989 1.0229 32 1 -0.3632 0.9354 -0.4259 33 1 -0.3633 -0.8364 -0.5970 34 1 1.6584 2.1327 0.0011 35 1 4.1205 2.1325 -0.0075 36 1 5.3517 -0.0001 -0.0101 37 1 4.1206 -2.1324 -0.0026 38 1 1.7468 -2.8374 2.1159 39 1 1.3809 -4.3081 1.1820 40 1 2.9922 -3.5607 1.0700 41 1 0.5421 -4.8224 -0.8312 42 1 -0.6097 -4.3815 -3.3272 43 1 0.6891 -3.9869 -4.4937 44 1 -1.2537 -7.6872 -1.8832 45 1 -2.0625 -6.5073 -3.0065 46 1 -4.9360 -7.5816 -2.9379 47 1 0.3396 -8.5206 -5.1180 48 1 0.4955 -9.1514 -3.4202 49 1 2.0652 -7.1996 -2.8489 50 1 0.8692 -6.8848 -1.5530 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054014065.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:52 Heat of formation + Delta-G solvation = 2.453246 kcal Electronic energy + Delta-G solvation = -30320.908798 eV Core-core repulsion = 26314.905788 eV Total energy + Delta-G solvation = -4006.003010 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.73148 -39.88280 -38.74479 -36.13524 -34.58388 -34.31689 -32.84689 -32.08897 -30.56834 -29.44585 -28.01262 -27.02617 -25.86013 -25.10671 -24.92113 -22.80663 -22.03321 -21.47744 -20.78578 -19.99889 -19.04060 -17.28752 -16.94904 -16.73393 -16.26440 -15.77314 -15.26412 -15.16391 -14.98759 -14.78276 -14.67118 -14.23157 -13.96065 -13.77564 -13.75989 -13.25246 -13.14530 -12.99740 -12.80546 -12.66840 -12.58534 -12.37080 -12.13085 -12.04145 -11.86980 -11.65902 -11.53505 -11.16892 -11.09850 -11.08054 -10.91358 -10.81814 -10.47230 -10.27401 -9.84090 -9.76414 -9.52415 -9.09526 -8.91996 -8.87555 -8.79860 -8.73138 -6.88388 -5.75511 -3.06965 1.16909 1.27337 2.56268 3.05637 3.41232 3.45051 3.46138 3.65085 4.29643 4.30366 4.46956 4.50894 4.62694 4.72983 4.75079 4.86865 4.93191 4.97787 4.99966 5.10029 5.15466 5.23659 5.29425 5.36745 5.39611 5.40875 5.44069 5.47421 5.58820 5.60897 5.63667 5.79013 5.84947 5.90383 5.97296 6.01182 6.04453 6.08627 6.32169 6.34839 6.36864 6.40526 6.47884 6.52193 6.58320 6.85924 6.94140 7.17693 7.43863 7.48006 7.65516 7.98686 8.16256 9.05331 9.71866 10.58461 11.41962 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020174 B = 0.002266 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.615283 B =12351.812247 C =12959.104298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.077 4.077 3 C -0.124 4.124 4 C -0.118 4.118 5 C -0.128 4.128 6 C -0.085 4.085 7 C -0.063 4.063 8 C -0.078 4.078 9 H 0.110 0.890 10 C -0.141 4.141 11 C 0.518 3.482 12 O -0.531 6.531 13 N -0.717 5.717 14 C 0.114 3.886 15 H 0.100 0.900 16 C 0.038 3.962 17 O -0.335 6.335 18 C 0.055 3.945 19 C 0.153 3.847 20 N -0.605 5.605 21 C -0.219 4.219 22 H 0.080 0.920 23 C -0.009 4.009 24 N -0.923 5.923 25 Si 0.913 3.087 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.284 1.284 29 C 0.129 3.871 30 C -0.146 4.146 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.403 0.597 42 H 0.062 0.938 43 H 0.089 0.911 44 H 0.034 0.966 45 H 0.077 0.923 46 H 0.253 0.747 47 H 0.053 0.947 48 H 0.048 0.952 49 H 0.083 0.917 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.730 15.144 12.084 24.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.077 4.077 3 C -0.142 4.142 4 C -0.136 4.136 5 C -0.146 4.146 6 C -0.103 4.103 7 C -0.064 4.064 8 C -0.100 4.100 9 H 0.128 0.872 10 C -0.199 4.199 11 C 0.304 3.696 12 O -0.407 6.407 13 N -0.370 5.370 14 C 0.009 3.991 15 H 0.118 0.882 16 C -0.040 4.040 17 O -0.252 6.252 18 C 0.014 3.986 19 C 0.028 3.972 20 N -0.331 5.331 21 C -0.347 4.347 22 H 0.098 0.902 23 C -0.205 4.205 24 N -0.571 5.571 25 Si 0.743 3.257 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.211 1.211 29 C 0.003 3.997 30 C -0.186 4.186 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.238 0.762 42 H 0.080 0.920 43 H 0.107 0.893 44 H 0.051 0.949 45 H 0.095 0.905 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.065 0.935 49 H 0.102 0.898 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 14.848 15.379 11.154 24.112 hybrid contribution -1.082 -0.647 0.148 1.269 sum 13.766 14.733 11.302 23.115 Atomic orbital electron populations 1.20877 0.91304 1.03109 1.02387 1.19741 0.95934 0.92580 0.99469 1.20960 0.94275 0.97212 1.01713 1.21101 0.94310 0.97949 1.00196 1.21068 0.99749 0.92489 1.01298 1.20873 0.93447 0.98029 0.97911 1.19116 0.93535 0.92638 1.01096 1.20407 1.02264 0.93372 0.93917 0.87185 1.21804 1.02098 0.99203 0.96757 1.20491 0.79631 0.80995 0.88491 1.90721 1.37403 1.66180 1.46358 1.46088 1.50879 1.20454 1.19595 1.22423 1.00675 0.91744 0.84242 0.88205 1.23781 0.96992 0.88975 0.94283 1.89035 1.91882 1.15189 1.29135 1.23761 0.95553 0.90279 0.89007 1.22583 0.91204 0.92127 0.91301 1.45825 0.99115 1.43995 1.44170 1.18961 0.83967 1.15217 1.16535 0.90229 1.24760 0.97085 0.99415 0.99210 1.69793 1.19735 1.33931 1.33615 0.86184 0.81800 0.78948 0.78744 1.21204 1.21578 1.21062 1.22515 0.87298 0.90851 0.99056 1.23028 1.00424 0.93732 1.01374 0.90945 0.91376 0.91212 0.86194 0.86307 0.86278 0.86409 0.91148 0.91436 0.91824 0.76185 0.91970 0.89258 0.94884 0.90490 0.93686 0.92895 0.93466 0.89848 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.14 36.01 0.33 -0.65 16 2 C -0.08 -0.78 5.88 -104.62 -0.62 -1.39 16 3 C -0.12 -1.16 9.68 -39.58 -0.38 -1.55 16 4 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 5 C -0.13 -1.25 10.05 -39.59 -0.40 -1.64 16 6 C -0.08 -0.91 8.24 -39.59 -0.33 -1.23 16 7 C -0.06 -0.67 4.31 -104.62 -0.45 -1.13 16 8 C -0.08 -0.73 2.63 -92.92 -0.24 -0.98 16 9 H 0.11 0.89 5.73 -51.93 -0.30 0.59 16 10 C -0.14 -1.01 8.84 37.16 0.33 -0.68 16 11 C 0.52 6.30 7.05 -10.99 -0.08 6.22 16 12 O -0.53 -8.43 15.06 5.56 0.08 -8.35 16 13 N -0.72 -8.11 4.98 -52.13 -0.26 -8.37 16 14 C 0.11 1.55 3.49 -66.20 -0.23 1.32 16 15 H 0.10 1.41 7.55 -51.93 -0.39 1.01 16 16 C 0.04 0.62 7.37 37.97 0.28 0.90 16 17 O -0.33 -6.80 11.44 -35.23 -0.40 -7.20 16 18 C 0.06 1.05 1.28 -90.66 -0.12 0.93 16 19 C 0.15 3.54 6.99 -3.40 -0.02 3.52 16 20 N -0.60 -15.78 3.71 -183.60 -0.68 -16.46 16 21 C -0.22 -6.27 10.70 -15.06 -0.16 -6.43 16 22 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 23 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 24 N -0.92 -27.41 11.40 55.49 0.63 -26.77 16 25 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 29 C 0.13 2.67 8.47 -3.41 -0.03 2.64 16 30 C -0.15 -2.03 6.24 -25.58 -0.16 -2.19 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.49 8.05 -51.93 -0.42 0.08 16 33 H 0.07 0.59 6.55 -51.93 -0.34 0.25 16 34 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 35 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.12 1.21 7.24 -52.49 -0.38 0.83 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.41 7.56 -51.93 -0.39 0.01 16 40 H 0.06 0.47 7.09 -51.93 -0.37 0.10 16 41 H 0.40 3.75 7.80 -40.82 -0.32 3.43 16 42 H 0.06 1.03 8.06 -51.93 -0.42 0.61 16 43 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.03 0.74 7.96 -51.93 -0.41 0.33 16 45 H 0.08 2.01 7.19 -51.93 -0.37 1.64 16 46 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.08 1.04 8.12 -51.93 -0.42 0.62 16 50 H 0.08 1.03 7.40 -51.93 -0.38 0.65 16 LS Contribution 400.68 15.07 6.04 6.04 Total: -1.00 -34.93 400.68 -10.23 -45.16 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -7.85 Total: 2.74 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -2.77 Total: -4.16 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.31 Total: -51.60 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.32 Total: -15.56 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.93 -10.23 -45.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054014065.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.611 kcal (2) G-P(sol) polarization free energy of solvation -34.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds