Wall clock time and date at job start Wed Apr 1 2020 04:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38254 * 119.99929 * 2 1 4 4 C 1.38220 * 119.99663 * 180.23300 * 3 2 1 5 5 C 1.38255 * 119.99699 * 359.81358 * 4 3 2 6 6 C 1.38204 * 120.00556 * 359.97438 * 5 4 3 7 7 C 1.38216 * 119.99671 * 179.79629 * 2 1 3 8 8 C 1.50701 * 119.99875 * 359.97438 * 7 2 1 9 9 H 1.08993 * 109.47356 * 353.92192 * 8 7 2 10 10 C 1.52999 * 109.46640 * 233.92303 * 8 7 2 11 11 C 1.50702 * 109.47003 * 113.92520 * 8 7 2 12 12 O 1.21275 * 119.99832 * 359.97438 * 11 8 7 13 13 N 1.34773 * 119.99662 * 179.97438 * 11 8 7 14 14 C 1.46506 * 120.00117 * 179.97438 * 13 11 8 15 15 H 1.09006 * 110.45015 * 32.40410 * 14 13 11 16 16 C 1.54547 * 110.51097 * 269.65820 * 14 13 11 17 17 O 1.44628 * 105.03357 * 217.72000 * 16 14 13 18 18 C 1.43238 * 105.22544 * 39.02196 * 17 16 14 19 19 C 1.52892 * 115.83454 * 90.92649 * 18 17 16 20 20 N 1.47782 * 85.78105 * 94.51402 * 19 18 17 21 21 C 1.36939 * 134.40145 * 203.86915 * 20 19 18 22 22 H 1.07998 * 120.00080 * 180.02562 * 21 20 19 23 23 C 1.38813 * 119.99760 * 0.02562 * 21 20 19 24 24 N 1.31617 * 120.00235 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00048 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46716 * 59.99872 * 25 23 21 27 27 H 1.48496 * 109.47162 * 180.02562 * 25 23 21 28 28 H 1.48495 * 109.47082 * 300.00475 * 25 23 21 29 29 C 1.47778 * 91.19557 * 23.87402 * 20 19 18 30 30 C 1.53470 * 106.26447 * 321.07009 * 18 17 16 31 31 H 1.08997 * 109.46955 * 264.47856 * 1 2 3 32 32 H 1.09004 * 109.46394 * 24.47932 * 1 2 3 33 33 H 1.08993 * 109.47094 * 144.47964 * 1 2 3 34 34 H 1.08001 * 120.00594 * 0.07019 * 3 2 1 35 35 H 1.07997 * 119.99759 * 179.83847 * 4 3 2 36 36 H 1.08001 * 119.99477 * 179.97438 * 5 4 3 37 37 H 1.07997 * 120.00774 * 179.97438 * 6 5 4 38 38 H 1.08994 * 109.47427 * 60.00083 * 10 8 7 39 39 H 1.09000 * 109.46921 * 180.02562 * 10 8 7 40 40 H 1.09003 * 109.47136 * 300.00011 * 10 8 7 41 41 H 0.96996 * 120.00507 * 0.02562 * 13 11 8 42 42 H 1.09001 * 110.32872 * 336.60710 * 16 14 13 43 43 H 1.09006 * 110.33018 * 98.82457 * 16 14 13 44 44 H 1.09002 * 113.82062 * 208.72551 * 19 18 17 45 45 H 1.08993 * 113.82315 * 340.29695 * 19 18 17 46 46 H 0.97001 * 120.00118 * 180.02562 * 24 23 21 47 47 H 1.09007 * 113.82103 * 221.90807 * 29 20 19 48 48 H 1.09003 * 113.93424 * 90.36028 * 29 20 19 49 49 H 1.09004 * 110.57033 * 264.15549 * 30 18 17 50 50 H 1.09000 * 110.70698 * 141.33359 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2717 -0.0001 -0.0058 6 6 3.5807 -1.1970 -0.0014 7 6 2.1981 -1.1970 0.0043 8 6 1.4445 -2.5021 0.0095 9 1 0.3780 -2.3053 0.1180 10 6 1.9256 -3.3640 1.1785 11 6 1.6918 -3.2301 -1.2866 12 8 2.4089 -2.7375 -2.1315 13 7 1.1160 -4.4286 -1.5067 14 6 1.3559 -5.1362 -2.7670 15 1 2.3588 -4.9243 -3.1378 16 6 0.2928 -4.7452 -3.8184 17 8 0.0139 -5.9661 -4.5418 18 6 0.0190 -7.0002 -3.5506 19 6 -1.3309 -7.3085 -2.9025 20 7 -1.4567 -8.3682 -3.9249 21 6 -2.5120 -9.0266 -4.4976 22 1 -2.3336 -9.7848 -5.2458 23 6 -3.8110 -8.7195 -4.1165 24 7 -4.0283 -7.7959 -3.2044 25 14 -5.2506 -9.6172 -4.8983 26 1 -5.1320 -11.0726 -4.6282 27 1 -6.5220 -9.1086 -4.3238 28 1 -5.2422 -9.3837 -6.3647 29 6 0.0113 -8.4335 -4.0822 30 6 1.1576 -6.6593 -2.5797 31 1 -0.3633 -0.0989 1.0229 32 1 -0.3632 0.9354 -0.4259 33 1 -0.3633 -0.8364 -0.5970 34 1 1.6584 2.1327 0.0011 35 1 4.1205 2.1325 -0.0075 36 1 5.3517 -0.0001 -0.0101 37 1 4.1206 -2.1324 -0.0026 38 1 1.7468 -2.8374 2.1159 39 1 1.3809 -4.3081 1.1820 40 1 2.9922 -3.5607 1.0700 41 1 0.5421 -4.8224 -0.8312 42 1 -0.6097 -4.3815 -3.3272 43 1 0.6891 -3.9869 -4.4937 44 1 -1.2537 -7.6872 -1.8832 45 1 -2.0625 -6.5073 -3.0065 46 1 -4.9360 -7.5816 -2.9379 47 1 0.3396 -8.5206 -5.1180 48 1 0.4955 -9.1514 -3.4202 49 1 2.0652 -7.1996 -2.8489 50 1 0.8692 -6.8848 -1.5530 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054014065.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:51 Heat of formation + Delta-G solvation = -19.751509 kcal Electronic energy + Delta-G solvation = -30321.871668 eV Core-core repulsion = 26314.905788 eV Total energy + Delta-G solvation = -4006.965880 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.79799 -41.07491 -39.70750 -37.72804 -35.64703 -35.21474 -34.13478 -33.52843 -31.71998 -30.36831 -29.57712 -27.68227 -27.54140 -26.66651 -25.81864 -24.07331 -23.37554 -22.38017 -21.84084 -20.85921 -20.62772 -18.74994 -18.18988 -17.78367 -17.24128 -16.98887 -16.70552 -16.47819 -16.40176 -15.96169 -15.68627 -15.49322 -15.07420 -14.80654 -14.63317 -14.53163 -14.41627 -14.24394 -13.92978 -13.62325 -13.38908 -13.24963 -13.19965 -13.04217 -12.96050 -12.93024 -12.73416 -12.69063 -12.63159 -12.47455 -12.30311 -11.81261 -11.74546 -11.63466 -11.58035 -11.31725 -10.91441 -10.79263 -10.53850 -10.08357 -9.64431 -9.44573 -8.91930 -7.90187 -5.22304 0.44744 0.54727 1.44079 1.48030 1.53645 1.61189 2.10980 2.47124 2.86366 2.95298 3.28165 3.41174 3.53348 3.58210 3.68929 3.76814 3.81586 4.00775 4.06964 4.12278 4.18072 4.23698 4.26054 4.32734 4.46621 4.60640 4.65969 4.68731 4.73573 4.77336 4.81762 4.84240 4.86955 4.90565 4.92002 4.95270 4.96277 5.02028 5.16280 5.19692 5.24748 5.28263 5.32580 5.47972 5.50665 5.62392 5.66117 5.75746 5.93188 6.11800 6.16928 6.53036 6.92453 7.22757 7.60515 8.54831 9.26515 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020174 B = 0.002266 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.615283 B =12351.812247 C =12959.104298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.092 4.092 3 C -0.134 4.134 4 C -0.124 4.124 5 C -0.140 4.140 6 C -0.101 4.101 7 C -0.080 4.080 8 C -0.072 4.072 9 H 0.123 0.877 10 C -0.138 4.138 11 C 0.520 3.480 12 O -0.570 6.570 13 N -0.707 5.707 14 C 0.128 3.872 15 H 0.101 0.899 16 C 0.035 3.965 17 O -0.368 6.368 18 C 0.071 3.929 19 C 0.153 3.847 20 N -0.642 5.642 21 C -0.235 4.235 22 H 0.081 0.919 23 C -0.068 4.068 24 N -0.952 5.952 25 Si 0.978 3.022 26 H -0.274 1.274 27 H -0.292 1.292 28 H -0.281 1.281 29 C 0.127 3.873 30 C -0.130 4.130 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.415 0.585 42 H 0.053 0.947 43 H 0.092 0.908 44 H 0.042 0.958 45 H 0.037 0.963 46 H 0.248 0.752 47 H 0.050 0.950 48 H 0.080 0.920 49 H 0.109 0.891 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.715 15.144 13.282 25.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.093 4.093 3 C -0.152 4.152 4 C -0.142 4.142 5 C -0.158 4.158 6 C -0.120 4.120 7 C -0.080 4.080 8 C -0.093 4.093 9 H 0.141 0.859 10 C -0.195 4.195 11 C 0.307 3.693 12 O -0.448 6.448 13 N -0.361 5.361 14 C 0.022 3.978 15 H 0.119 0.881 16 C -0.043 4.043 17 O -0.286 6.286 18 C 0.030 3.970 19 C 0.028 3.972 20 N -0.368 5.368 21 C -0.363 4.363 22 H 0.098 0.902 23 C -0.261 4.261 24 N -0.601 5.601 25 Si 0.806 3.194 26 H -0.200 1.200 27 H -0.218 1.218 28 H -0.207 1.207 29 C 0.002 3.998 30 C -0.169 4.169 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.152 0.848 37 H 0.134 0.866 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.252 0.748 42 H 0.071 0.929 43 H 0.110 0.890 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.057 0.943 47 H 0.068 0.932 48 H 0.098 0.902 49 H 0.127 0.873 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 15.859 15.365 12.374 25.312 hybrid contribution -1.342 -0.584 -0.274 1.489 sum 14.517 14.780 12.100 23.992 Atomic orbital electron populations 1.20904 0.90178 1.03197 1.03285 1.20055 0.96997 0.92746 0.99457 1.21282 0.94691 0.97856 1.01325 1.21420 0.94541 0.98693 0.99506 1.21349 1.00739 0.92529 1.01200 1.21019 0.93845 0.98414 0.98679 1.19326 0.93743 0.93384 1.01568 1.20430 1.02965 0.92954 0.92983 0.85903 1.21817 1.01983 0.99555 0.96148 1.20991 0.78610 0.80741 0.88954 1.90705 1.39194 1.67094 1.47854 1.45986 1.50808 1.20263 1.19022 1.22154 0.99499 0.91771 0.84338 0.88116 1.23904 0.97583 0.87783 0.95016 1.88998 1.92129 1.16756 1.30733 1.23431 0.95016 0.89411 0.89102 1.22540 0.92738 0.90474 0.91462 1.46246 1.00958 1.44640 1.45003 1.19348 0.85336 1.15064 1.16563 0.90168 1.25601 0.99612 1.00621 1.00243 1.69978 1.19677 1.35384 1.35044 0.85160 0.78303 0.78180 0.77740 1.20029 1.21817 1.20734 1.22764 0.84522 0.92744 0.99761 1.22953 0.99124 0.93777 1.01065 0.89403 0.90685 0.91903 0.84414 0.84175 0.84797 0.86628 0.90051 0.89959 0.92218 0.74751 0.92884 0.89010 0.94082 0.94482 0.94305 0.93175 0.90246 0.87289 0.87541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 9.14 71.24 0.65 -1.13 16 2 C -0.09 -1.77 5.88 -19.86 -0.12 -1.89 16 3 C -0.13 -2.35 9.68 22.27 0.22 -2.14 16 4 C -0.12 -2.11 10.05 22.27 0.22 -1.89 16 5 C -0.14 -2.63 10.05 22.27 0.22 -2.40 16 6 C -0.10 -2.13 8.24 22.27 0.18 -1.95 16 7 C -0.08 -1.63 4.31 -19.86 -0.09 -1.72 16 8 C -0.07 -1.25 2.63 -12.29 -0.03 -1.29 16 9 H 0.12 1.79 5.73 -2.39 -0.01 1.78 16 10 C -0.14 -1.69 8.84 71.98 0.64 -1.05 16 11 C 0.52 12.04 7.05 87.66 0.62 12.66 16 12 O -0.57 -17.86 15.06 -3.01 -0.05 -17.91 16 13 N -0.71 -14.72 4.98 -437.24 -2.18 -16.90 16 14 C 0.13 3.25 3.49 46.11 0.16 3.41 16 15 H 0.10 2.64 7.55 -2.38 -0.02 2.62 16 16 C 0.04 1.14 7.37 72.51 0.53 1.67 16 17 O -0.37 -14.96 11.44 -148.98 -1.70 -16.66 16 18 C 0.07 2.63 1.28 -10.66 -0.01 2.62 16 19 C 0.15 7.11 6.99 86.10 0.60 7.71 16 20 N -0.64 -33.64 3.71 -741.06 -2.75 -36.39 16 21 C -0.23 -13.57 10.70 84.03 0.90 -12.67 16 22 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 23 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 24 N -0.95 -57.78 11.40 21.65 0.25 -57.53 16 25 Si 0.98 46.58 29.55 68.60 2.03 48.61 16 26 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 27 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 28 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 29 C 0.13 5.09 8.47 86.09 0.73 5.82 16 30 C -0.13 -3.23 6.24 31.34 0.20 -3.04 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 0.99 8.05 -2.38 -0.02 0.97 16 33 H 0.06 1.01 6.55 -2.39 -0.02 1.00 16 34 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 35 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 36 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 37 H 0.12 2.35 7.24 -2.91 -0.02 2.33 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 0.76 7.56 -2.39 -0.02 0.74 16 40 H 0.06 0.79 7.09 -2.39 -0.02 0.77 16 41 H 0.41 6.73 7.80 -92.71 -0.72 6.01 16 42 H 0.05 1.79 8.06 -2.39 -0.02 1.77 16 43 H 0.09 2.88 8.14 -2.38 -0.02 2.86 16 44 H 0.04 1.82 7.96 -2.39 -0.02 1.80 16 45 H 0.04 2.00 7.19 -2.39 -0.02 1.98 16 46 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 47 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 48 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 49 H 0.11 2.26 8.12 -2.39 -0.02 2.24 16 50 H 0.11 2.21 7.40 -2.39 -0.02 2.19 16 Total: -1.00 -77.54 400.68 1.92 -75.62 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.22 Total: 21.92 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 6.09 Total: -0.76 kcal Atomic # 7 Polarization: -106.15 SS G_CDS: -4.67 Total: -110.82 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -1.75 Total: -34.57 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -77.54 1.92 -75.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054014065.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.869 kcal (2) G-P(sol) polarization free energy of solvation -77.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds