Wall clock time and date at job start Wed Apr 1 2020 02:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38230 * 119.99643 * 2 1 4 4 C 1.38239 * 120.00113 * 179.97438 * 3 2 1 5 5 C 1.38239 * 119.99631 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99843 * 180.02562 * 5 4 3 7 7 C 1.50705 * 109.47030 * 90.00133 * 6 5 4 8 8 O 1.21276 * 119.99941 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99696 * 179.97438 * 7 6 5 10 10 C 1.46978 * 120.72431 * 0.02562 * 9 7 6 11 11 C 1.53161 * 108.43974 * 234.52930 * 10 9 7 12 12 C 1.52508 * 109.79326 * 305.46544 * 11 10 9 13 13 H 1.09007 * 108.93066 * 179.65695 * 12 11 10 14 14 O 1.42687 * 110.62561 * 298.69137 * 12 11 10 15 15 C 1.43071 * 113.87627 * 185.34538 * 14 12 11 16 16 C 1.53232 * 109.44831 * 298.35413 * 15 14 12 17 17 N 1.47171 * 108.69101 * 51.59116 * 16 15 14 18 18 C 1.36942 * 121.22295 * 129.03033 * 17 16 15 19 19 H 1.07999 * 120.00035 * 206.18102 * 18 17 16 20 20 C 1.38810 * 119.99895 * 26.17906 * 18 17 16 21 21 N 1.31622 * 120.00141 * 16.91485 * 20 18 17 22 22 Si 1.86800 * 120.00010 * 196.91505 * 20 18 17 23 23 H 1.48495 * 109.47258 * 60.00380 * 22 20 18 24 24 H 1.48507 * 109.47240 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47049 * 299.99858 * 22 20 18 26 26 C 1.47595 * 117.55520 * 309.04833 * 17 16 15 27 27 H 1.09001 * 111.16516 * 172.79087 * 26 17 16 28 28 C 1.46793 * 120.71790 * 179.97438 * 9 7 6 29 29 C 1.38242 * 119.99856 * 0.27178 * 5 4 3 30 30 C 1.38227 * 120.00066 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47365 * 90.00042 * 1 2 3 32 32 H 1.09003 * 109.46810 * 209.99691 * 1 2 3 33 33 H 1.09000 * 109.47176 * 329.99566 * 1 2 3 34 34 H 1.08001 * 120.00504 * 359.97438 * 3 2 1 35 35 H 1.07994 * 120.00484 * 180.02562 * 4 3 2 36 36 H 1.08993 * 109.47592 * 329.99986 * 6 5 4 37 37 H 1.09002 * 109.47136 * 209.99757 * 6 5 4 38 38 H 1.09003 * 109.64558 * 114.84152 * 10 9 7 39 39 H 1.09002 * 109.81690 * 354.31561 * 10 9 7 40 40 H 1.08996 * 109.41754 * 185.37148 * 11 10 9 41 41 H 1.08992 * 109.36588 * 65.53220 * 11 10 9 42 42 H 1.09004 * 109.47404 * 178.36407 * 15 14 12 43 43 H 1.09003 * 109.47804 * 58.35180 * 15 14 12 44 44 H 1.09003 * 109.60185 * 291.82837 * 16 15 14 45 45 H 1.09003 * 109.73223 * 171.42902 * 16 15 14 46 46 H 0.97004 * 120.00278 * 180.02562 * 21 20 18 47 47 H 1.09004 * 109.51684 * 245.63667 * 28 9 7 48 48 H 1.08999 * 109.52373 * 5.81872 * 28 9 7 49 49 H 1.07998 * 119.99758 * 179.72689 * 29 5 4 50 50 H 1.08005 * 120.00142 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7787 0.0002 0.0028 7 6 6.2799 0.0008 1.4240 8 8 5.4911 0.0007 2.3452 9 7 7.6048 0.0004 1.6713 10 6 8.5748 0.0000 0.5670 11 6 9.5276 -1.1836 0.7596 12 6 10.1577 -1.1189 2.1469 13 1 10.8276 -1.9698 2.2711 14 8 10.9187 0.0787 2.2980 15 6 11.6399 0.1548 3.5312 16 6 10.6519 0.1333 4.7023 17 7 9.7487 -1.0167 4.5362 18 6 9.5392 -1.9076 5.5549 19 1 9.2479 -2.9235 5.3324 20 6 9.7012 -1.5050 6.8734 21 7 9.7248 -0.2233 7.1720 22 14 9.8856 -2.7822 8.2240 23 1 11.0829 -3.6182 7.9546 24 1 10.0427 -2.0990 9.5332 25 1 8.6771 -3.6445 8.2582 26 6 9.0772 -1.1747 3.2314 27 1 8.5372 -2.1201 3.1786 28 6 8.1104 0.0016 3.0494 29 6 3.5805 -1.1971 -0.0035 30 6 2.1982 -1.1971 0.0005 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.6581 2.1325 -0.0004 35 1 4.1205 2.1325 0.0010 36 1 6.1425 0.8898 -0.5111 37 1 6.1425 -0.8901 -0.5103 38 1 9.1409 0.9314 0.5762 39 1 8.0520 -0.1016 -0.3840 40 1 10.3116 -1.1444 0.0034 41 1 8.9717 -2.1155 0.6573 42 1 12.2160 1.0798 3.5588 43 1 12.3157 -0.6968 3.6102 44 1 10.0717 1.0561 4.7082 45 1 11.1966 0.0379 5.6416 46 1 9.8384 0.0581 8.0933 47 1 8.6342 0.9375 3.2444 48 1 7.2763 -0.1015 3.7435 49 1 4.1206 -2.1324 -0.0072 50 1 1.6582 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074288831.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:00 Heat of formation + Delta-G solvation = -28.009147 kcal Electronic energy + Delta-G solvation = -30918.056862 eV Core-core repulsion = 26910.732904 eV Total energy + Delta-G solvation = -4007.323958 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.28157 -39.38800 -38.33055 -35.71397 -34.65561 -33.83192 -31.81838 -31.50230 -30.93248 -30.06120 -29.22683 -27.41539 -25.76792 -24.40583 -23.75771 -22.75123 -22.74235 -21.50358 -20.96239 -19.33663 -18.24378 -17.09275 -16.81891 -16.26171 -15.84884 -15.43983 -15.36469 -15.18193 -15.00062 -14.93178 -14.44683 -14.14418 -13.87497 -13.74891 -13.46339 -13.43113 -13.13742 -12.84584 -12.72212 -12.59671 -12.33425 -12.29717 -12.04182 -11.88727 -11.75469 -11.34451 -11.19824 -11.06951 -10.97344 -10.91967 -10.75469 -10.59426 -10.27849 -10.18687 -9.99265 -9.63762 -9.48913 -9.00794 -8.90385 -8.59158 -8.49085 -8.20751 -6.76547 -5.86469 -3.30206 1.29559 1.42483 2.93385 3.27919 3.35852 3.40981 3.42154 3.78584 4.31324 4.41117 4.61692 4.73148 4.81192 4.85803 4.98212 5.00678 5.05444 5.14789 5.29095 5.34145 5.36491 5.38439 5.43071 5.45095 5.47355 5.63541 5.67138 5.68327 5.77147 5.77617 6.00804 6.02995 6.05672 6.06762 6.09084 6.15070 6.30032 6.34764 6.38646 6.42779 6.56009 6.59443 6.69395 6.76554 6.97072 7.00887 7.07794 7.47551 7.70084 7.78972 7.87678 8.29770 8.52724 9.08244 9.69946 10.27221 11.21128 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013063 B = 0.002875 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.975510 B = 9738.215081 C =11122.473223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.092 4.092 3 C -0.120 4.120 4 C -0.102 4.102 5 C -0.066 4.066 6 C -0.102 4.102 7 C 0.510 3.490 8 O -0.533 6.533 9 N -0.608 5.608 10 C 0.112 3.888 11 C -0.123 4.123 12 C 0.080 3.920 13 H 0.051 0.949 14 O -0.388 6.388 15 C 0.040 3.960 16 C 0.137 3.863 17 N -0.584 5.584 18 C -0.256 4.256 19 H 0.068 0.932 20 C 0.006 3.994 21 N -0.900 5.900 22 Si 0.906 3.094 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.136 3.864 27 H 0.073 0.927 28 C 0.106 3.894 29 C -0.101 4.101 30 C -0.120 4.120 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.041 0.959 44 H 0.028 0.972 45 H 0.096 0.904 46 H 0.256 0.744 47 H 0.067 0.933 48 H 0.088 0.912 49 H 0.120 0.880 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.615 1.269 -19.081 20.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.138 4.138 4 C -0.120 4.120 5 C -0.066 4.066 6 C -0.141 4.141 7 C 0.297 3.703 8 O -0.410 6.410 9 N -0.342 5.342 10 C -0.011 4.011 11 C -0.161 4.161 12 C 0.021 3.979 13 H 0.069 0.931 14 O -0.307 6.307 15 C -0.038 4.038 16 C 0.012 3.988 17 N -0.306 5.306 18 C -0.385 4.385 19 H 0.086 0.914 20 C -0.194 4.194 21 N -0.544 5.544 22 Si 0.736 3.264 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.208 1.208 26 C 0.027 3.973 27 H 0.091 0.909 28 C -0.017 4.017 29 C -0.119 4.119 30 C -0.138 4.138 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.114 0.886 46 H 0.066 0.934 47 H 0.085 0.915 48 H 0.106 0.894 49 H 0.138 0.862 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.005 1.484 -18.484 20.197 hybrid contribution 0.281 -0.737 1.106 1.358 sum -7.724 0.747 -17.378 19.032 Atomic orbital electron populations 1.20773 0.91439 1.02726 1.01996 1.19883 0.95912 0.93308 1.00135 1.20946 0.94057 0.97417 1.01408 1.20953 0.94207 0.97392 0.99421 1.19307 0.93780 0.93561 0.99973 1.20721 0.93015 1.04762 0.95651 1.20438 0.82107 0.76887 0.90864 1.90731 1.54629 1.49361 1.46258 1.48311 1.04914 1.72722 1.08255 1.21642 0.90825 0.99510 0.89158 1.21798 0.98713 0.98813 0.96826 1.22239 0.93583 0.87842 0.94270 0.93086 1.87707 1.63767 1.40374 1.38877 1.23323 0.94694 1.00196 0.85592 1.21472 0.91178 0.89710 0.96451 1.44281 1.47604 1.29391 1.09343 1.19127 1.43809 0.90738 0.84860 0.91394 1.25055 1.00992 0.95895 0.97411 1.70012 1.52716 1.13356 1.18302 0.86311 0.78288 0.80776 0.81055 1.20966 1.21533 1.20755 1.21576 0.91507 0.96838 0.87389 0.90854 1.22315 0.98470 1.00478 0.80463 1.20961 0.94211 0.97404 0.99335 1.20951 0.94070 0.97430 1.01338 0.91414 0.91647 0.91664 0.86274 0.86293 0.88270 0.88205 0.90637 0.90357 0.90423 0.90492 0.90137 0.94109 0.95362 0.88583 0.93375 0.91477 0.89364 0.86242 0.86248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.01 36.01 0.36 -0.56 16 2 C -0.09 -1.03 5.88 -104.63 -0.62 -1.64 16 3 C -0.12 -1.38 9.70 -39.58 -0.38 -1.76 16 4 C -0.10 -1.25 9.70 -39.58 -0.38 -1.64 16 5 C -0.07 -0.84 4.37 -104.62 -0.46 -1.30 16 6 C -0.10 -1.17 4.18 -29.03 -0.12 -1.29 16 7 C 0.51 8.37 7.69 -10.98 -0.08 8.29 16 8 O -0.53 -11.32 15.45 5.56 0.09 -11.23 16 9 N -0.61 -9.86 2.96 -172.75 -0.51 -10.37 16 10 C 0.11 1.38 6.17 -3.70 -0.02 1.35 16 11 C -0.12 -1.56 5.82 -26.90 -0.16 -1.72 16 12 C 0.08 1.39 2.73 -26.89 -0.07 1.31 16 13 H 0.05 0.92 8.11 -51.92 -0.42 0.50 16 14 O -0.39 -7.08 9.59 -35.23 -0.34 -7.42 16 15 C 0.04 0.75 6.97 37.28 0.26 1.01 16 16 C 0.14 3.19 4.94 -3.56 -0.02 3.17 16 17 N -0.58 -14.29 2.71 -163.84 -0.44 -14.73 16 18 C -0.26 -6.93 9.71 -15.06 -0.15 -7.08 16 19 H 0.07 1.82 7.88 -52.49 -0.41 1.40 16 20 C 0.01 0.16 4.96 -17.43 -0.09 0.07 16 21 N -0.90 -25.74 11.14 55.49 0.62 -25.12 16 22 Si 0.91 21.59 29.59 -169.99 -5.03 16.56 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 C 0.14 2.81 3.00 -67.05 -0.20 2.60 16 27 H 0.07 1.57 8.03 -51.93 -0.42 1.15 16 28 C 0.11 2.18 5.62 -3.70 -0.02 2.16 16 29 C -0.10 -1.25 9.70 -39.58 -0.38 -1.64 16 30 C -0.12 -1.38 9.70 -39.59 -0.38 -1.76 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 33 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 34 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 36 H 0.10 0.91 7.88 -51.93 -0.41 0.50 16 37 H 0.10 0.91 7.66 -51.93 -0.40 0.51 16 38 H 0.08 0.97 7.94 -51.93 -0.41 0.56 16 39 H 0.08 0.69 5.96 -51.93 -0.31 0.38 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 43 H 0.04 0.77 8.13 -51.93 -0.42 0.35 16 44 H 0.03 0.70 7.17 -51.93 -0.37 0.33 16 45 H 0.10 2.46 6.12 -51.93 -0.32 2.15 16 46 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.07 1.47 6.56 -51.93 -0.34 1.13 16 48 H 0.09 2.14 7.00 -51.93 -0.36 1.77 16 49 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 50 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 391.36 15.07 5.90 5.90 Total: -1.00 -32.66 391.36 -10.60 -43.25 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -7.95 Total: 3.56 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -2.92 Total: -0.41 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.34 Total: -50.22 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.25 Total: -18.65 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.66 -10.60 -43.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074288831.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.244 kcal (2) G-P(sol) polarization free energy of solvation -32.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds