Wall clock time and date at job start Wed Apr 1 2020 02:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38230 * 119.99643 * 2 1 4 4 C 1.38239 * 120.00113 * 179.97438 * 3 2 1 5 5 C 1.38239 * 119.99631 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99843 * 180.02562 * 5 4 3 7 7 C 1.50705 * 109.47030 * 90.00133 * 6 5 4 8 8 O 1.21276 * 119.99941 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99696 * 179.97438 * 7 6 5 10 10 C 1.46978 * 120.72431 * 0.02562 * 9 7 6 11 11 C 1.53161 * 108.43974 * 234.52930 * 10 9 7 12 12 C 1.52508 * 109.79326 * 305.46544 * 11 10 9 13 13 H 1.09007 * 108.93066 * 179.65695 * 12 11 10 14 14 O 1.42687 * 110.62561 * 298.69137 * 12 11 10 15 15 C 1.43071 * 113.87627 * 185.34538 * 14 12 11 16 16 C 1.53232 * 109.44831 * 298.35413 * 15 14 12 17 17 N 1.47171 * 108.69101 * 51.59116 * 16 15 14 18 18 C 1.36942 * 121.22295 * 129.03033 * 17 16 15 19 19 H 1.07999 * 120.00035 * 206.18102 * 18 17 16 20 20 C 1.38810 * 119.99895 * 26.17906 * 18 17 16 21 21 N 1.31622 * 120.00141 * 16.91485 * 20 18 17 22 22 Si 1.86800 * 120.00010 * 196.91505 * 20 18 17 23 23 H 1.48495 * 109.47258 * 60.00380 * 22 20 18 24 24 H 1.48507 * 109.47240 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47049 * 299.99858 * 22 20 18 26 26 C 1.47595 * 117.55520 * 309.04833 * 17 16 15 27 27 H 1.09001 * 111.16516 * 172.79087 * 26 17 16 28 28 C 1.46793 * 120.71790 * 179.97438 * 9 7 6 29 29 C 1.38242 * 119.99856 * 0.27178 * 5 4 3 30 30 C 1.38227 * 120.00066 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47365 * 90.00042 * 1 2 3 32 32 H 1.09003 * 109.46810 * 209.99691 * 1 2 3 33 33 H 1.09000 * 109.47176 * 329.99566 * 1 2 3 34 34 H 1.08001 * 120.00504 * 359.97438 * 3 2 1 35 35 H 1.07994 * 120.00484 * 180.02562 * 4 3 2 36 36 H 1.08993 * 109.47592 * 329.99986 * 6 5 4 37 37 H 1.09002 * 109.47136 * 209.99757 * 6 5 4 38 38 H 1.09003 * 109.64558 * 114.84152 * 10 9 7 39 39 H 1.09002 * 109.81690 * 354.31561 * 10 9 7 40 40 H 1.08996 * 109.41754 * 185.37148 * 11 10 9 41 41 H 1.08992 * 109.36588 * 65.53220 * 11 10 9 42 42 H 1.09004 * 109.47404 * 178.36407 * 15 14 12 43 43 H 1.09003 * 109.47804 * 58.35180 * 15 14 12 44 44 H 1.09003 * 109.60185 * 291.82837 * 16 15 14 45 45 H 1.09003 * 109.73223 * 171.42902 * 16 15 14 46 46 H 0.97004 * 120.00278 * 180.02562 * 21 20 18 47 47 H 1.09004 * 109.51684 * 245.63667 * 28 9 7 48 48 H 1.08999 * 109.52373 * 5.81872 * 28 9 7 49 49 H 1.07998 * 119.99758 * 179.72689 * 29 5 4 50 50 H 1.08005 * 120.00142 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7787 0.0002 0.0028 7 6 6.2799 0.0008 1.4240 8 8 5.4911 0.0007 2.3452 9 7 7.6048 0.0004 1.6713 10 6 8.5748 0.0000 0.5670 11 6 9.5276 -1.1836 0.7596 12 6 10.1577 -1.1189 2.1469 13 1 10.8276 -1.9698 2.2711 14 8 10.9187 0.0787 2.2980 15 6 11.6399 0.1548 3.5312 16 6 10.6519 0.1333 4.7023 17 7 9.7487 -1.0167 4.5362 18 6 9.5392 -1.9076 5.5549 19 1 9.2479 -2.9235 5.3324 20 6 9.7012 -1.5050 6.8734 21 7 9.7248 -0.2233 7.1720 22 14 9.8856 -2.7822 8.2240 23 1 11.0829 -3.6182 7.9546 24 1 10.0427 -2.0990 9.5332 25 1 8.6771 -3.6445 8.2582 26 6 9.0772 -1.1747 3.2314 27 1 8.5372 -2.1201 3.1786 28 6 8.1104 0.0016 3.0494 29 6 3.5805 -1.1971 -0.0035 30 6 2.1982 -1.1971 0.0005 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.6581 2.1325 -0.0004 35 1 4.1205 2.1325 0.0010 36 1 6.1425 0.8898 -0.5111 37 1 6.1425 -0.8901 -0.5103 38 1 9.1409 0.9314 0.5762 39 1 8.0520 -0.1016 -0.3840 40 1 10.3116 -1.1444 0.0034 41 1 8.9717 -2.1155 0.6573 42 1 12.2160 1.0798 3.5588 43 1 12.3157 -0.6968 3.6102 44 1 10.0717 1.0561 4.7082 45 1 11.1966 0.0379 5.6416 46 1 9.8384 0.0581 8.0933 47 1 8.6342 0.9375 3.2444 48 1 7.2763 -0.1015 3.7435 49 1 4.1206 -2.1324 -0.0072 50 1 1.6582 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074288831.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:58 Heat of formation + Delta-G solvation = -47.322072 kcal Electronic energy + Delta-G solvation = -30918.894334 eV Core-core repulsion = 26910.732904 eV Total energy + Delta-G solvation = -4008.161430 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.59158 -40.51501 -39.60896 -37.11295 -36.45429 -34.75036 -33.50844 -33.04340 -31.78495 -31.35429 -30.43873 -29.15882 -26.88182 -25.67635 -25.43063 -24.34123 -23.61064 -22.91717 -21.95200 -20.75343 -19.63175 -18.90930 -18.21022 -17.31100 -17.13077 -16.98882 -16.76904 -16.48181 -16.22142 -16.15954 -15.90657 -15.53739 -15.29419 -14.90090 -14.77873 -14.46173 -14.35400 -14.26892 -13.97001 -13.79063 -13.61809 -13.36312 -13.25915 -13.09285 -12.84280 -12.72146 -12.70299 -12.59353 -12.42306 -12.24391 -12.16874 -11.94697 -11.85399 -11.79393 -11.66417 -11.21055 -10.84678 -10.76242 -10.52005 -9.78164 -9.66521 -9.36516 -8.72464 -7.94759 -5.41964 0.41248 0.54633 1.42706 1.44029 1.51442 1.67565 2.03167 2.44898 2.86022 2.91300 3.19591 3.44868 3.65237 3.77427 3.92120 3.95880 4.02694 4.10582 4.15805 4.17368 4.21673 4.28930 4.31164 4.44600 4.52481 4.55246 4.60626 4.63806 4.64133 4.66341 4.82620 4.84353 4.86646 4.87830 4.92046 4.98990 5.00099 5.06765 5.22177 5.23652 5.30530 5.32160 5.47914 5.52332 5.57089 5.58933 5.70271 5.72617 6.16481 6.24429 6.35128 6.53731 7.02153 7.24516 7.69550 8.23631 9.09992 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013063 B = 0.002875 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.975510 B = 9738.215081 C =11122.473223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.101 4.101 3 C -0.134 4.134 4 C -0.118 4.118 5 C -0.087 4.087 6 C -0.088 4.088 7 C 0.505 3.495 8 O -0.592 6.592 9 N -0.606 5.606 10 C 0.107 3.893 11 C -0.116 4.116 12 C 0.084 3.916 13 H 0.048 0.952 14 O -0.382 6.382 15 C 0.053 3.947 16 C 0.145 3.855 17 N -0.603 5.603 18 C -0.268 4.268 19 H 0.066 0.934 20 C -0.047 4.047 21 N -0.932 5.932 22 Si 0.970 3.030 23 H -0.272 1.272 24 H -0.292 1.292 25 H -0.280 1.280 26 C 0.133 3.867 27 H 0.061 0.939 28 C 0.126 3.874 29 C -0.117 4.117 30 C -0.134 4.134 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.136 0.864 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.075 0.925 39 H 0.129 0.871 40 H 0.113 0.887 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.046 0.954 44 H -0.001 1.001 45 H 0.067 0.933 46 H 0.252 0.748 47 H 0.046 0.954 48 H 0.036 0.964 49 H 0.129 0.871 50 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.313 0.506 -22.518 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.101 4.101 3 C -0.152 4.152 4 C -0.136 4.136 5 C -0.087 4.087 6 C -0.127 4.127 7 C 0.295 3.705 8 O -0.473 6.473 9 N -0.339 5.339 10 C -0.014 4.014 11 C -0.154 4.154 12 C 0.024 3.976 13 H 0.067 0.933 14 O -0.301 6.301 15 C -0.025 4.025 16 C 0.019 3.981 17 N -0.326 5.326 18 C -0.398 4.398 19 H 0.084 0.916 20 C -0.243 4.243 21 N -0.577 5.577 22 Si 0.798 3.202 23 H -0.198 1.198 24 H -0.218 1.218 25 H -0.206 1.206 26 C 0.025 3.975 27 H 0.079 0.921 28 C 0.000 4.000 29 C -0.135 4.135 30 C -0.152 4.152 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.154 0.846 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.152 0.848 38 H 0.094 0.906 39 H 0.147 0.853 40 H 0.132 0.868 41 H 0.111 0.889 42 H 0.126 0.874 43 H 0.064 0.936 44 H 0.017 0.983 45 H 0.085 0.915 46 H 0.061 0.939 47 H 0.065 0.935 48 H 0.055 0.945 49 H 0.147 0.853 50 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.682 0.713 -21.996 23.309 hybrid contribution 0.085 -0.486 2.164 2.220 sum -7.597 0.227 -19.832 21.238 Atomic orbital electron populations 1.20819 0.89473 1.03291 1.03180 1.20284 0.97548 0.93109 0.99180 1.21264 0.94149 0.98462 1.01283 1.21231 0.94905 0.97855 0.99624 1.19535 0.94635 0.93811 1.00726 1.20761 0.92240 1.07822 0.91870 1.21426 0.81374 0.75104 0.92589 1.90709 1.56081 1.51880 1.48606 1.48353 1.05984 1.72360 1.07245 1.22015 0.90414 0.99446 0.89494 1.21864 0.99635 0.99717 0.94195 1.22310 0.92131 0.87415 0.95698 0.93350 1.87725 1.63581 1.40959 1.37829 1.23141 0.93447 1.01893 0.83999 1.21304 0.91278 0.88139 0.97369 1.44521 1.48701 1.29198 1.10177 1.19428 1.43101 0.91267 0.85968 0.91632 1.25814 1.01337 0.97630 0.99479 1.70175 1.54208 1.15086 1.18260 0.85306 0.78395 0.78450 0.78071 1.19807 1.21815 1.20588 1.21730 0.92666 0.96021 0.87101 0.92085 1.21671 0.96264 0.99335 0.82697 1.21236 0.94885 0.97865 0.99524 1.21271 0.94188 0.98466 1.01257 0.89819 0.91111 0.91093 0.84601 0.85447 0.85095 0.84806 0.90633 0.85301 0.86838 0.88911 0.87369 0.93564 0.98271 0.91482 0.93896 0.93546 0.94483 0.85335 0.84614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 10.01 71.24 0.71 -0.92 16 2 C -0.10 -2.14 5.88 -19.87 -0.12 -2.25 16 3 C -0.13 -2.93 9.70 22.27 0.22 -2.72 16 4 C -0.12 -2.80 9.70 22.27 0.22 -2.58 16 5 C -0.09 -2.08 4.37 -19.86 -0.09 -2.17 16 6 C -0.09 -1.75 4.18 29.10 0.12 -1.62 16 7 C 0.51 16.22 7.69 87.66 0.67 16.89 16 8 O -0.59 -26.09 15.45 -3.02 -0.05 -26.13 16 9 N -0.61 -19.07 2.96 -818.85 -2.42 -21.50 16 10 C 0.11 2.21 6.17 86.34 0.53 2.75 16 11 C -0.12 -2.46 5.82 30.48 0.18 -2.28 16 12 C 0.08 2.74 2.73 30.49 0.08 2.83 16 13 H 0.05 1.64 8.11 -2.38 -0.02 1.62 16 14 O -0.38 -13.20 9.59 -148.98 -1.43 -14.63 16 15 C 0.05 1.97 6.97 72.06 0.50 2.47 16 16 C 0.14 7.00 4.94 86.33 0.43 7.42 16 17 N -0.60 -30.70 2.71 -672.28 -1.82 -32.52 16 18 C -0.27 -15.05 9.71 84.03 0.82 -14.23 16 19 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 20 C -0.05 -2.65 4.96 84.86 0.42 -2.23 16 21 N -0.93 -55.90 11.14 21.65 0.24 -55.66 16 22 Si 0.97 45.65 29.59 68.60 2.03 47.68 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 25 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 26 C 0.13 5.61 3.00 44.96 0.14 5.74 16 27 H 0.06 2.68 8.03 -2.39 -0.02 2.67 16 28 C 0.13 5.39 5.62 86.44 0.49 5.88 16 29 C -0.12 -2.77 9.70 22.27 0.22 -2.55 16 30 C -0.13 -2.95 9.70 22.27 0.22 -2.73 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 0.96 8.09 -2.39 -0.02 0.94 16 33 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 34 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 35 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 36 H 0.13 1.79 7.88 -2.39 -0.02 1.78 16 37 H 0.13 1.77 7.66 -2.39 -0.02 1.75 16 38 H 0.08 1.63 7.94 -2.39 -0.02 1.62 16 39 H 0.13 1.44 5.96 -2.39 -0.01 1.43 16 40 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.11 3.42 8.14 -2.38 -0.02 3.40 16 43 H 0.05 1.68 8.13 -2.39 -0.02 1.67 16 44 H 0.00 -0.04 7.17 -2.39 -0.02 -0.06 16 45 H 0.07 3.62 6.12 -2.39 -0.01 3.60 16 46 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 47 H 0.05 2.15 6.56 -2.39 -0.02 2.14 16 48 H 0.04 1.94 7.00 -2.39 -0.02 1.92 16 49 H 0.13 2.65 8.06 -2.91 -0.02 2.62 16 50 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -77.94 391.36 3.22 -74.72 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.92 Total: 20.36 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 5.75 Total: 7.69 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -4.01 Total: -109.69 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -1.48 Total: -40.77 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -77.94 3.22 -74.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074288831.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.395 kcal (2) G-P(sol) polarization free energy of solvation -77.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds