Wall clock time and date at job start Wed Apr 1 2020 02:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38229 * 120.00162 * 2 1 4 4 C 1.38231 * 120.00481 * 179.97438 * 3 2 1 5 5 C 1.38239 * 119.99758 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00199 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.46936 * 89.99640 * 6 5 4 8 8 O 1.21282 * 120.00219 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99963 * 180.02562 * 7 6 5 10 10 C 1.46881 * 120.29588 * 359.90381 * 9 7 6 11 11 C 1.53370 * 109.21867 * 232.12478 * 10 9 7 12 12 C 1.52778 * 108.92870 * 306.37093 * 11 10 9 13 13 H 1.08999 * 109.34566 * 302.77886 * 12 11 10 14 14 O 1.42611 * 111.11594 * 181.99785 * 12 11 10 15 15 C 1.43145 * 113.62442 * 176.35764 * 14 12 11 16 16 C 1.53199 * 109.73841 * 61.68685 * 15 14 12 17 17 N 1.47348 * 108.80681 * 308.79086 * 16 15 14 18 18 C 1.36933 * 121.30655 * 230.23611 * 17 16 15 19 19 H 1.08002 * 120.00385 * 152.52696 * 18 17 16 20 20 C 1.38816 * 119.99940 * 332.52445 * 18 17 16 21 21 N 1.31615 * 119.99770 * 344.73022 * 20 18 17 22 22 Si 1.86800 * 119.99863 * 164.73292 * 20 18 17 23 23 H 1.48500 * 109.47271 * 94.83024 * 22 20 18 24 24 H 1.48507 * 109.46832 * 214.82629 * 22 20 18 25 25 H 1.48497 * 109.47017 * 334.82537 * 22 20 18 26 26 C 1.46807 * 117.00444 * 50.56104 * 17 16 15 27 27 H 1.08991 * 110.05073 * 67.11694 * 26 17 16 28 28 C 1.47124 * 120.40930 * 180.02562 * 9 7 6 29 29 C 1.38233 * 119.99677 * 0.27302 * 5 4 3 30 30 C 1.38231 * 120.00321 * 359.51828 * 29 5 4 31 31 H 1.08998 * 109.46797 * 90.00455 * 1 2 3 32 32 H 1.08999 * 109.47349 * 210.00104 * 1 2 3 33 33 H 1.09000 * 109.47314 * 330.00377 * 1 2 3 34 34 H 1.08008 * 119.99819 * 359.97438 * 3 2 1 35 35 H 1.08000 * 120.00391 * 179.97438 * 4 3 2 36 36 H 1.09002 * 109.47178 * 330.00137 * 6 5 4 37 37 H 1.08995 * 109.47284 * 210.00054 * 6 5 4 38 38 H 1.09001 * 109.40227 * 112.27434 * 10 9 7 39 39 H 1.08996 * 109.63619 * 352.12605 * 10 9 7 40 40 H 1.09005 * 109.57567 * 186.50054 * 11 10 9 41 41 H 1.09004 * 109.57840 * 66.24068 * 11 10 9 42 42 H 1.09005 * 109.42601 * 181.76402 * 15 14 12 43 43 H 1.08998 * 109.43031 * 301.66173 * 15 14 12 44 44 H 1.08999 * 109.58115 * 68.59149 * 16 15 14 45 45 H 1.08997 * 109.57989 * 188.99506 * 16 15 14 46 46 H 0.97007 * 119.99999 * 180.02562 * 21 20 18 47 47 H 1.08996 * 109.72529 * 7.09428 * 28 9 7 48 48 H 1.09002 * 109.72342 * 246.42617 * 28 9 7 49 49 H 1.08004 * 119.99704 * 179.72615 * 29 5 4 50 50 H 1.07998 * 120.00315 * 180.27618 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7787 -0.0001 0.0028 7 6 6.2799 0.0007 1.4240 8 8 5.4911 0.0007 2.3453 9 7 7.6049 0.0013 1.6714 10 6 8.5660 -0.0009 0.5607 11 6 9.5688 -1.1435 0.7630 12 6 10.1888 -1.0183 2.1537 13 1 10.6578 -0.0394 2.2532 14 8 11.1651 -2.0342 2.3743 15 6 11.8402 -1.9178 3.6312 16 6 10.8302 -2.0514 4.7753 17 7 9.7139 -1.1202 4.5347 18 6 9.2816 -0.2607 5.5090 19 1 8.8135 0.6736 5.2362 20 6 9.4450 -0.5902 6.8476 21 7 9.7296 -1.8286 7.1904 22 14 9.2607 0.7241 8.1622 23 1 7.8727 0.7055 8.6896 24 1 10.2142 0.4547 9.2684 25 1 9.5490 2.0566 7.5737 26 6 9.0847 -1.1623 3.2089 27 1 8.5670 -2.1114 3.0709 28 6 8.1041 0.0014 3.0553 29 6 3.5805 -1.1971 -0.0036 30 6 2.1982 -1.1972 0.0003 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6582 2.1325 -0.0004 35 1 4.1205 2.1325 0.0001 36 1 6.1425 0.8897 -0.5112 37 1 6.1425 -0.8902 -0.5104 38 1 9.0975 0.9505 0.5399 39 1 8.0367 -0.1434 -0.3814 40 1 10.3515 -1.0807 0.0070 41 1 9.0542 -2.1006 0.6772 42 1 12.5890 -2.7055 3.7148 43 1 12.3286 -0.9453 3.6916 44 1 10.4523 -3.0731 4.8116 45 1 11.3141 -1.8050 5.7204 46 1 9.8434 -2.0590 8.1258 47 1 7.2712 -0.1258 3.7468 48 1 8.6144 0.9421 3.2622 49 1 4.1206 -2.1324 -0.0072 50 1 1.6582 -2.1325 0.0007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074288833.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:07 Heat of formation + Delta-G solvation = -28.014871 kcal Electronic energy + Delta-G solvation = -30812.154274 eV Core-core repulsion = 26804.830068 eV Total energy + Delta-G solvation = -4007.324206 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.33512 -39.36837 -38.37725 -36.03606 -34.72975 -33.86910 -31.87603 -31.39501 -30.95626 -30.20657 -29.43466 -27.13215 -25.83903 -24.58939 -23.93521 -22.77417 -22.08571 -21.52130 -20.80041 -19.71658 -18.80354 -17.13895 -16.88204 -16.16789 -15.88698 -15.61859 -15.35365 -15.20143 -14.98642 -14.86993 -14.45593 -14.02555 -13.85812 -13.78784 -13.49121 -13.44986 -13.06242 -12.93027 -12.85378 -12.73958 -12.57145 -12.38839 -11.97984 -11.90990 -11.78124 -11.34372 -11.20174 -11.01856 -10.99865 -10.93079 -10.83139 -10.59585 -10.26387 -10.23305 -9.99528 -9.63921 -9.57524 -8.99645 -8.92699 -8.54495 -8.52143 -8.33617 -6.73594 -5.84701 -3.30206 1.26639 1.40196 2.83659 3.15345 3.35442 3.42689 3.43917 3.74058 4.23360 4.42443 4.57604 4.70239 4.72752 4.83227 4.90493 4.96613 5.01923 5.18329 5.27566 5.31983 5.34975 5.37173 5.40213 5.41959 5.44391 5.53280 5.65861 5.65956 5.69522 5.73907 5.88856 5.93555 6.03327 6.03866 6.09326 6.14249 6.24445 6.32397 6.36089 6.45865 6.53922 6.56374 6.65495 6.72064 6.87306 6.97862 7.12263 7.49620 7.62596 7.71280 7.88078 8.31596 8.41608 9.09051 9.72577 10.30984 11.23425 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012203 B = 0.002978 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.964928 B = 9399.569749 C =10931.770307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.121 4.121 4 C -0.101 4.101 5 C -0.067 4.067 6 C -0.102 4.102 7 C 0.512 3.488 8 O -0.528 6.528 9 N -0.613 5.613 10 C 0.111 3.889 11 C -0.125 4.125 12 C 0.077 3.923 13 H 0.053 0.947 14 O -0.390 6.390 15 C 0.040 3.960 16 C 0.141 3.859 17 N -0.587 5.587 18 C -0.257 4.257 19 H 0.072 0.928 20 C 0.006 3.994 21 N -0.901 5.901 22 Si 0.904 3.096 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.278 1.278 26 C 0.137 3.863 27 H 0.037 0.963 28 C 0.124 3.876 29 C -0.100 4.100 30 C -0.120 4.120 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.040 0.960 44 H 0.027 0.973 45 H 0.095 0.905 46 H 0.255 0.745 47 H 0.101 0.899 48 H 0.071 0.929 49 H 0.120 0.880 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.801 3.727 -19.150 21.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.139 4.139 4 C -0.119 4.119 5 C -0.068 4.068 6 C -0.142 4.142 7 C 0.300 3.700 8 O -0.403 6.403 9 N -0.348 5.348 10 C -0.012 4.012 11 C -0.163 4.163 12 C 0.017 3.983 13 H 0.071 0.929 14 O -0.309 6.309 15 C -0.038 4.038 16 C 0.016 3.984 17 N -0.312 5.312 18 C -0.386 4.386 19 H 0.089 0.911 20 C -0.193 4.193 21 N -0.545 5.545 22 Si 0.733 3.267 23 H -0.213 1.213 24 H -0.215 1.215 25 H -0.203 1.203 26 C 0.029 3.971 27 H 0.054 0.946 28 C 0.003 3.997 29 C -0.118 4.118 30 C -0.138 4.138 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.113 0.887 46 H 0.065 0.935 47 H 0.119 0.881 48 H 0.090 0.910 49 H 0.138 0.862 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.171 3.537 -18.570 20.594 hybrid contribution 0.113 0.648 1.085 1.269 sum -8.058 4.186 -17.485 19.702 Atomic orbital electron populations 1.20776 0.91421 1.02751 1.02019 1.19893 0.95931 0.93302 1.00013 1.20946 0.94060 0.97424 1.01436 1.20943 0.94208 0.97341 0.99444 1.19286 0.93685 0.93589 1.00214 1.20727 0.93150 1.04881 0.95405 1.20458 0.81947 0.76603 0.91023 1.90745 1.54558 1.48811 1.46235 1.48321 1.05251 1.73326 1.07906 1.21712 0.90957 0.98891 0.89641 1.21844 0.98319 0.99265 0.96912 1.22437 0.90447 0.91111 0.94333 0.92936 1.87736 1.53693 1.51658 1.37822 1.23330 0.95381 1.00097 0.85002 1.21443 0.87714 0.93039 0.96229 1.44038 1.34338 1.44029 1.08781 1.19117 1.37024 0.97198 0.85304 0.91063 1.25086 1.00780 0.95806 0.97595 1.70019 1.51995 1.16010 1.16461 0.86263 0.77680 0.81264 0.81506 1.21250 1.21491 1.20308 1.21299 0.91798 0.96239 0.87764 0.94591 1.21751 0.98716 0.98709 0.80546 1.20973 0.94238 0.97437 0.99199 1.20962 0.94070 0.97462 1.01271 0.91394 0.91620 0.91652 0.86260 0.86287 0.88148 0.88043 0.91191 0.89524 0.90270 0.90859 0.90081 0.94120 0.95442 0.88710 0.93495 0.88060 0.91032 0.86197 0.86208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 2 C -0.09 -1.00 5.88 -104.62 -0.62 -1.61 16 3 C -0.12 -1.34 9.70 -39.59 -0.38 -1.72 16 4 C -0.10 -1.20 9.70 -39.58 -0.38 -1.58 16 5 C -0.07 -0.83 4.37 -104.62 -0.46 -1.29 16 6 C -0.10 -1.11 4.17 -29.03 -0.12 -1.23 16 7 C 0.51 8.07 7.68 -10.98 -0.08 7.99 16 8 O -0.53 -10.84 15.44 5.56 0.09 -10.75 16 9 N -0.61 -9.45 2.98 -172.68 -0.52 -9.97 16 10 C 0.11 1.25 6.32 -3.64 -0.02 1.23 16 11 C -0.12 -1.64 5.82 -26.65 -0.16 -1.80 16 12 C 0.08 1.36 2.50 -26.64 -0.07 1.30 16 13 H 0.05 0.95 8.13 -51.93 -0.42 0.53 16 14 O -0.39 -7.60 10.48 -35.23 -0.37 -7.97 16 15 C 0.04 0.78 6.95 37.26 0.26 1.04 16 16 C 0.14 3.38 5.41 -3.48 -0.02 3.36 16 17 N -0.59 -14.62 3.03 -164.43 -0.50 -15.12 16 18 C -0.26 -6.92 8.86 -15.06 -0.13 -7.05 16 19 H 0.07 1.87 6.28 -52.49 -0.33 1.54 16 20 C 0.01 0.18 4.99 -17.43 -0.09 0.09 16 21 N -0.90 -25.98 11.16 55.49 0.62 -25.36 16 22 Si 0.90 21.68 29.58 -169.99 -5.03 16.66 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.14 2.91 3.02 -67.58 -0.20 2.70 16 27 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 28 C 0.12 2.44 4.49 -3.73 -0.02 2.42 16 29 C -0.10 -1.23 9.70 -39.59 -0.38 -1.61 16 30 C -0.12 -1.36 9.70 -39.58 -0.38 -1.74 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 33 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 34 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 35 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.10 0.83 7.90 -51.93 -0.41 0.42 16 37 H 0.10 0.89 7.59 -51.93 -0.39 0.49 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.68 5.90 -51.93 -0.31 0.37 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.09 2.46 6.23 -51.93 -0.32 2.13 16 46 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 47 H 0.10 2.34 6.81 -51.93 -0.35 1.99 16 48 H 0.07 1.41 7.33 -51.93 -0.38 1.03 16 49 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 50 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 391.30 15.07 5.90 5.90 Total: -1.00 -33.35 391.30 -10.68 -44.03 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -7.97 Total: 2.64 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -2.90 Total: -0.06 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: -0.40 Total: -50.45 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.28 Total: -18.72 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.35 -10.68 -44.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074288833.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.017 kcal (2) G-P(sol) polarization free energy of solvation -33.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds