Wall clock time and date at job start Wed Apr 1 2020 02:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38229 * 120.00162 * 2 1 4 4 C 1.38231 * 120.00481 * 179.97438 * 3 2 1 5 5 C 1.38239 * 119.99758 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00199 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.46936 * 89.99640 * 6 5 4 8 8 O 1.21282 * 120.00219 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99963 * 180.02562 * 7 6 5 10 10 C 1.46881 * 120.29588 * 359.90381 * 9 7 6 11 11 C 1.53370 * 109.21867 * 232.12478 * 10 9 7 12 12 C 1.52778 * 108.92870 * 306.37093 * 11 10 9 13 13 H 1.08999 * 109.34566 * 302.77886 * 12 11 10 14 14 O 1.42611 * 111.11594 * 181.99785 * 12 11 10 15 15 C 1.43145 * 113.62442 * 176.35764 * 14 12 11 16 16 C 1.53199 * 109.73841 * 61.68685 * 15 14 12 17 17 N 1.47348 * 108.80681 * 308.79086 * 16 15 14 18 18 C 1.36933 * 121.30655 * 230.23611 * 17 16 15 19 19 H 1.08002 * 120.00385 * 152.52696 * 18 17 16 20 20 C 1.38816 * 119.99940 * 332.52445 * 18 17 16 21 21 N 1.31615 * 119.99770 * 344.73022 * 20 18 17 22 22 Si 1.86800 * 119.99863 * 164.73292 * 20 18 17 23 23 H 1.48500 * 109.47271 * 94.83024 * 22 20 18 24 24 H 1.48507 * 109.46832 * 214.82629 * 22 20 18 25 25 H 1.48497 * 109.47017 * 334.82537 * 22 20 18 26 26 C 1.46807 * 117.00444 * 50.56104 * 17 16 15 27 27 H 1.08991 * 110.05073 * 67.11694 * 26 17 16 28 28 C 1.47124 * 120.40930 * 180.02562 * 9 7 6 29 29 C 1.38233 * 119.99677 * 0.27302 * 5 4 3 30 30 C 1.38231 * 120.00321 * 359.51828 * 29 5 4 31 31 H 1.08998 * 109.46797 * 90.00455 * 1 2 3 32 32 H 1.08999 * 109.47349 * 210.00104 * 1 2 3 33 33 H 1.09000 * 109.47314 * 330.00377 * 1 2 3 34 34 H 1.08008 * 119.99819 * 359.97438 * 3 2 1 35 35 H 1.08000 * 120.00391 * 179.97438 * 4 3 2 36 36 H 1.09002 * 109.47178 * 330.00137 * 6 5 4 37 37 H 1.08995 * 109.47284 * 210.00054 * 6 5 4 38 38 H 1.09001 * 109.40227 * 112.27434 * 10 9 7 39 39 H 1.08996 * 109.63619 * 352.12605 * 10 9 7 40 40 H 1.09005 * 109.57567 * 186.50054 * 11 10 9 41 41 H 1.09004 * 109.57840 * 66.24068 * 11 10 9 42 42 H 1.09005 * 109.42601 * 181.76402 * 15 14 12 43 43 H 1.08998 * 109.43031 * 301.66173 * 15 14 12 44 44 H 1.08999 * 109.58115 * 68.59149 * 16 15 14 45 45 H 1.08997 * 109.57989 * 188.99506 * 16 15 14 46 46 H 0.97007 * 119.99999 * 180.02562 * 21 20 18 47 47 H 1.08996 * 109.72529 * 7.09428 * 28 9 7 48 48 H 1.09002 * 109.72342 * 246.42617 * 28 9 7 49 49 H 1.08004 * 119.99704 * 179.72615 * 29 5 4 50 50 H 1.07998 * 120.00315 * 180.27618 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7787 -0.0001 0.0028 7 6 6.2799 0.0007 1.4240 8 8 5.4911 0.0007 2.3453 9 7 7.6049 0.0013 1.6714 10 6 8.5660 -0.0009 0.5607 11 6 9.5688 -1.1435 0.7630 12 6 10.1888 -1.0183 2.1537 13 1 10.6578 -0.0394 2.2532 14 8 11.1651 -2.0342 2.3743 15 6 11.8402 -1.9178 3.6312 16 6 10.8302 -2.0514 4.7753 17 7 9.7139 -1.1202 4.5347 18 6 9.2816 -0.2607 5.5090 19 1 8.8135 0.6736 5.2362 20 6 9.4450 -0.5902 6.8476 21 7 9.7296 -1.8286 7.1904 22 14 9.2607 0.7241 8.1622 23 1 7.8727 0.7055 8.6896 24 1 10.2142 0.4547 9.2684 25 1 9.5490 2.0566 7.5737 26 6 9.0847 -1.1623 3.2089 27 1 8.5670 -2.1114 3.0709 28 6 8.1041 0.0014 3.0553 29 6 3.5805 -1.1971 -0.0036 30 6 2.1982 -1.1972 0.0003 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6582 2.1325 -0.0004 35 1 4.1205 2.1325 0.0001 36 1 6.1425 0.8897 -0.5112 37 1 6.1425 -0.8902 -0.5104 38 1 9.0975 0.9505 0.5399 39 1 8.0367 -0.1434 -0.3814 40 1 10.3515 -1.0807 0.0070 41 1 9.0542 -2.1006 0.6772 42 1 12.5890 -2.7055 3.7148 43 1 12.3286 -0.9453 3.6916 44 1 10.4523 -3.0731 4.8116 45 1 11.3141 -1.8050 5.7204 46 1 9.8434 -2.0590 8.1258 47 1 7.2712 -0.1258 3.7468 48 1 8.6144 0.9421 3.2622 49 1 4.1206 -2.1324 -0.0072 50 1 1.6582 -2.1325 0.0007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074288833.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:06 Heat of formation + Delta-G solvation = -48.407086 kcal Electronic energy + Delta-G solvation = -30813.038547 eV Core-core repulsion = 26804.830068 eV Total energy + Delta-G solvation = -4008.208479 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.58696 -40.49557 -39.65876 -37.39731 -36.55800 -34.76338 -33.51231 -32.98223 -31.78501 -31.58645 -30.52009 -28.87965 -27.08899 -25.81662 -25.45827 -23.64920 -23.61165 -22.87411 -21.83360 -21.38225 -19.99211 -18.71761 -18.37665 -17.23054 -17.15942 -17.04798 -16.80299 -16.46714 -16.21812 -16.03329 -15.87262 -15.56630 -15.38482 -14.96023 -14.71505 -14.61615 -14.44178 -14.27593 -13.99724 -13.91519 -13.62420 -13.31030 -13.25700 -13.01793 -12.84064 -12.78014 -12.68446 -12.63211 -12.40952 -12.33273 -12.08234 -11.96392 -11.89517 -11.79352 -11.72802 -11.25764 -10.87070 -10.77339 -10.53841 -9.78228 -9.67260 -9.36702 -8.76354 -7.94493 -5.43309 0.40927 0.54644 1.41605 1.43139 1.52621 1.64240 1.95444 2.44287 2.81132 2.88590 3.20930 3.44266 3.63866 3.74885 3.90963 3.92847 4.00694 4.09129 4.11441 4.17043 4.18653 4.27196 4.30390 4.40823 4.48971 4.52155 4.56112 4.60475 4.63550 4.65866 4.70951 4.83877 4.84358 4.86481 4.87793 4.98718 5.01291 5.11483 5.12271 5.22107 5.30767 5.31587 5.44726 5.51607 5.53363 5.59841 5.69939 5.72698 6.16221 6.23512 6.33078 6.45164 7.01637 7.20551 7.69495 8.25527 9.11686 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012203 B = 0.002978 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.964928 B = 9399.569749 C =10931.770307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.101 4.101 3 C -0.133 4.133 4 C -0.115 4.115 5 C -0.087 4.087 6 C -0.089 4.089 7 C 0.507 3.493 8 O -0.587 6.587 9 N -0.612 5.612 10 C 0.108 3.892 11 C -0.117 4.117 12 C 0.080 3.920 13 H 0.057 0.943 14 O -0.392 6.392 15 C 0.053 3.947 16 C 0.145 3.855 17 N -0.606 5.606 18 C -0.260 4.260 19 H 0.073 0.927 20 C -0.049 4.049 21 N -0.935 5.935 22 Si 0.966 3.034 23 H -0.292 1.292 24 H -0.287 1.287 25 H -0.264 1.264 26 C 0.134 3.866 27 H 0.003 0.997 28 C 0.140 3.860 29 C -0.119 4.119 30 C -0.135 4.135 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.138 0.862 35 H 0.132 0.868 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.093 0.907 39 H 0.135 0.865 40 H 0.115 0.885 41 H 0.067 0.933 42 H 0.109 0.891 43 H 0.050 0.950 44 H -0.006 1.006 45 H 0.069 0.931 46 H 0.251 0.749 47 H 0.054 0.946 48 H 0.070 0.930 49 H 0.125 0.875 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.440 5.323 -22.521 24.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.101 4.101 3 C -0.151 4.151 4 C -0.133 4.133 5 C -0.087 4.087 6 C -0.128 4.128 7 C 0.297 3.703 8 O -0.467 6.467 9 N -0.345 5.345 10 C -0.013 4.013 11 C -0.156 4.156 12 C 0.020 3.980 13 H 0.075 0.925 14 O -0.311 6.311 15 C -0.025 4.025 16 C 0.019 3.981 17 N -0.331 5.331 18 C -0.390 4.390 19 H 0.091 0.909 20 C -0.244 4.244 21 N -0.581 5.581 22 Si 0.794 3.206 23 H -0.219 1.219 24 H -0.213 1.213 25 H -0.189 1.189 26 C 0.027 3.973 27 H 0.020 0.980 28 C 0.016 3.984 29 C -0.137 4.137 30 C -0.153 4.153 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.155 0.845 35 H 0.150 0.850 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.111 0.889 39 H 0.153 0.847 40 H 0.134 0.866 41 H 0.085 0.915 42 H 0.127 0.873 43 H 0.069 0.931 44 H 0.012 0.988 45 H 0.088 0.912 46 H 0.060 0.940 47 H 0.073 0.927 48 H 0.088 0.912 49 H 0.143 0.857 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.786 5.144 -22.012 23.909 hybrid contribution -0.090 0.107 2.121 2.126 sum -7.876 5.252 -19.891 22.029 Atomic orbital electron populations 1.20819 0.89524 1.03285 1.03168 1.20282 0.97521 0.93123 0.99156 1.21279 0.94242 0.98398 1.01202 1.21241 0.94817 0.97859 0.99371 1.19526 0.94661 0.93753 1.00788 1.20783 0.92226 1.07969 0.91820 1.21431 0.81320 0.74879 0.92654 1.90722 1.56032 1.51403 1.48525 1.48399 1.06260 1.72872 1.07018 1.22136 0.90266 0.99226 0.89671 1.21900 0.99410 0.99885 0.94364 1.22556 0.88691 0.90951 0.95767 0.92489 1.87747 1.53847 1.52460 1.37070 1.23159 0.94291 1.01704 0.83310 1.21313 0.88424 0.91002 0.97321 1.44344 1.35097 1.43716 1.09909 1.19420 1.35944 0.97564 0.86042 0.90900 1.25855 1.01358 0.97631 0.99597 1.70175 1.53763 1.17770 1.16418 0.85280 0.76983 0.79435 0.78918 1.21908 1.21324 1.18887 1.21453 0.93363 0.95221 0.87298 0.97977 1.21213 0.96472 0.97758 0.82917 1.21228 0.94913 0.97916 0.99676 1.21258 0.94192 0.98480 1.01390 0.89841 0.91234 0.90986 0.84458 0.85005 0.84424 0.85139 0.88928 0.84738 0.86648 0.91462 0.87336 0.93133 0.98756 0.91228 0.93961 0.92713 0.91180 0.85724 0.84854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 10.01 71.24 0.71 -0.90 16 2 C -0.10 -2.09 5.88 -19.87 -0.12 -2.21 16 3 C -0.13 -2.80 9.70 22.27 0.22 -2.59 16 4 C -0.11 -2.56 9.70 22.27 0.22 -2.35 16 5 C -0.09 -2.02 4.37 -19.87 -0.09 -2.10 16 6 C -0.09 -1.65 4.17 29.10 0.12 -1.53 16 7 C 0.51 15.45 7.68 87.66 0.67 16.12 16 8 O -0.59 -24.85 15.44 -3.04 -0.05 -24.90 16 9 N -0.61 -17.95 2.98 -818.62 -2.44 -20.39 16 10 C 0.11 1.94 6.32 86.43 0.55 2.49 16 11 C -0.12 -2.63 5.82 30.64 0.18 -2.45 16 12 C 0.08 2.70 2.50 30.65 0.08 2.78 16 13 H 0.06 1.92 8.13 -2.39 -0.02 1.90 16 14 O -0.39 -14.62 10.48 -148.98 -1.56 -16.18 16 15 C 0.05 2.03 6.95 72.05 0.50 2.54 16 16 C 0.15 7.20 5.41 86.28 0.47 7.67 16 17 N -0.61 -31.31 3.03 -674.14 -2.05 -33.35 16 18 C -0.26 -14.48 8.86 84.03 0.74 -13.74 16 19 H 0.07 3.96 6.28 -2.91 -0.02 3.94 16 20 C -0.05 -2.78 4.99 84.86 0.42 -2.36 16 21 N -0.94 -56.46 11.16 21.65 0.24 -56.22 16 22 Si 0.97 45.88 29.58 68.60 2.03 47.91 16 23 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 24 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 25 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 26 C 0.13 5.82 3.02 45.05 0.14 5.96 16 27 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 28 C 0.14 5.63 4.49 86.24 0.39 6.01 16 29 C -0.12 -2.83 9.70 22.27 0.22 -2.62 16 30 C -0.14 -3.00 9.70 22.27 0.22 -2.78 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 0.94 8.09 -2.39 -0.02 0.93 16 33 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 34 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 35 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.14 1.55 7.90 -2.39 -0.02 1.53 16 37 H 0.13 1.69 7.59 -2.39 -0.02 1.67 16 38 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.13 1.23 5.90 -2.39 -0.01 1.21 16 40 H 0.12 1.89 8.14 -2.38 -0.02 1.87 16 41 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 42 H 0.11 3.55 8.14 -2.38 -0.02 3.53 16 43 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 44 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 45 H 0.07 3.78 6.23 -2.39 -0.01 3.77 16 46 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 47 H 0.05 2.70 6.81 -2.39 -0.02 2.68 16 48 H 0.07 2.80 7.33 -2.39 -0.02 2.78 16 49 H 0.12 2.67 8.06 -2.91 -0.02 2.65 16 50 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -79.37 391.30 2.73 -76.64 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.92 Total: 18.56 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 5.63 Total: 7.94 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -4.25 Total: -109.96 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -1.61 Total: -41.08 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -79.37 2.73 -76.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074288833.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.234 kcal (2) G-P(sol) polarization free energy of solvation -79.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds