Wall clock time and date at job start Wed Apr 1 2020 02:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38234 * 119.99703 * 2 1 4 4 C 1.38232 * 119.99861 * 179.97438 * 3 2 1 5 5 C 1.38237 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00050 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.46907 * 90.00305 * 6 5 4 8 8 O 1.21278 * 120.00164 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99596 * 179.97438 * 7 6 5 10 10 C 1.46981 * 120.72352 * 0.02562 * 9 7 6 11 11 C 1.53158 * 108.44861 * 125.43557 * 10 9 7 12 12 C 1.52503 * 109.79953 * 54.51106 * 11 10 9 13 13 H 1.08994 * 108.39609 * 180.68258 * 12 11 10 14 14 O 1.42697 * 110.62610 * 61.31727 * 12 11 10 15 15 C 1.43077 * 113.86754 * 174.63680 * 14 12 11 16 16 C 1.53223 * 109.44748 * 61.64907 * 15 14 12 17 17 N 1.47177 * 108.70213 * 308.41901 * 16 15 14 18 18 C 1.36932 * 121.22169 * 230.95651 * 17 16 15 19 19 H 1.08003 * 119.99870 * 153.54865 * 18 17 16 20 20 C 1.38811 * 120.00450 * 333.55485 * 18 17 16 21 21 N 1.31622 * 119.99671 * 343.44144 * 20 18 17 22 22 Si 1.86799 * 120.00551 * 163.44693 * 20 18 17 23 23 H 1.48507 * 109.46753 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47441 * 119.99549 * 22 20 18 25 25 H 1.48497 * 109.47079 * 239.99896 * 22 20 18 26 26 C 1.47595 * 117.55320 * 50.93406 * 17 16 15 27 27 H 1.08994 * 110.30688 * 187.71555 * 26 17 16 28 28 C 1.46794 * 120.71979 * 179.97438 * 9 7 6 29 29 C 1.38238 * 119.99825 * 0.25271 * 5 4 3 30 30 C 1.38234 * 120.00004 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.46730 * 89.99957 * 1 2 3 32 32 H 1.08997 * 109.46878 * 209.99649 * 1 2 3 33 33 H 1.08998 * 109.47194 * 329.99642 * 1 2 3 34 34 H 1.08002 * 120.00265 * 359.97438 * 3 2 1 35 35 H 1.08005 * 120.00284 * 179.97438 * 4 3 2 36 36 H 1.08987 * 109.47190 * 329.99926 * 6 5 4 37 37 H 1.09001 * 109.46511 * 209.99471 * 6 5 4 38 38 H 1.09003 * 109.63613 * 245.12107 * 10 9 7 39 39 H 1.08995 * 109.64039 * 5.53548 * 10 9 7 40 40 H 1.09003 * 109.41138 * 294.41511 * 11 10 9 41 41 H 1.08994 * 109.41398 * 174.61626 * 11 10 9 42 42 H 1.08996 * 109.47707 * 181.64703 * 15 14 12 43 43 H 1.09004 * 109.47497 * 301.65069 * 15 14 12 44 44 H 1.08997 * 109.59840 * 68.17869 * 16 15 14 45 45 H 1.09003 * 109.60261 * 188.49463 * 16 15 14 46 46 H 0.96998 * 120.00120 * 179.97438 * 21 20 18 47 47 H 1.08992 * 109.52510 * 114.41798 * 28 9 7 48 48 H 1.09000 * 109.52187 * 354.22834 * 28 9 7 49 49 H 1.08001 * 120.00135 * 179.73082 * 29 5 4 50 50 H 1.07998 * 120.00175 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 0.0005 6 6 5.7787 0.0002 0.0005 7 6 6.2810 0.0001 1.4214 8 8 5.4929 0.0005 2.3432 9 7 7.6062 -0.0004 1.6676 10 6 8.5753 -0.0003 0.5626 11 6 9.5285 1.1832 0.7540 12 6 10.1594 1.1192 2.1409 13 1 10.8225 1.9764 2.2571 14 8 10.9204 -0.0784 2.2922 15 6 11.6427 -0.1536 3.5250 16 6 10.6556 -0.1311 4.6967 17 7 9.7519 1.0186 4.5306 18 6 9.5430 1.9101 5.5487 19 1 9.2555 2.9270 5.3255 20 6 9.7006 1.5070 6.8676 21 7 9.7265 0.2252 7.1653 22 14 9.8759 2.7837 8.2200 23 1 9.8152 4.1440 7.6273 24 1 8.7727 2.6207 9.2005 25 1 11.1797 2.6012 8.9069 26 6 9.0797 1.1756 3.2260 27 1 8.5516 2.1282 3.1849 28 6 8.1129 0.0002 3.0454 29 6 3.5806 -1.1971 -0.0053 30 6 2.1982 -1.1971 0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.6581 2.1325 -0.0004 35 1 4.1205 2.1326 0.0001 36 1 6.1420 0.8900 -0.5132 37 1 6.1420 -0.8899 -0.5132 38 1 9.1412 -0.9318 0.5717 39 1 8.0487 0.0993 -0.3865 40 1 8.9735 2.1157 0.6511 41 1 10.3119 1.1434 -0.0027 42 1 12.2189 -1.0783 3.5529 43 1 12.3186 0.6981 3.6027 44 1 10.0756 -1.0539 4.7039 45 1 11.2032 -0.0362 5.6344 46 1 9.8371 -0.0565 8.0869 47 1 8.6367 -0.9353 3.2412 48 1 7.2793 0.1042 3.7400 49 1 4.1206 -2.1324 -0.0097 50 1 1.6583 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074288834.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:11 Heat of formation + Delta-G solvation = -28.227756 kcal Electronic energy + Delta-G solvation = -30918.194739 eV Core-core repulsion = 26910.861301 eV Total energy + Delta-G solvation = -4007.333438 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.28140 -39.38770 -38.33026 -35.71325 -34.65931 -33.83209 -31.82357 -31.50423 -30.93249 -30.06236 -29.22803 -27.41812 -25.76902 -24.40953 -23.76131 -22.75303 -22.74546 -21.50329 -20.96324 -19.33631 -18.23520 -17.09236 -16.82139 -16.26251 -15.84988 -15.44658 -15.36455 -15.18114 -15.00593 -14.93063 -14.44840 -14.14399 -13.87457 -13.74076 -13.46248 -13.43059 -13.14746 -12.84811 -12.72285 -12.60015 -12.33439 -12.29853 -12.04465 -11.88593 -11.75573 -11.34574 -11.19651 -11.07318 -10.97361 -10.91634 -10.77602 -10.59973 -10.23646 -10.17790 -10.00325 -9.63646 -9.48985 -9.00778 -8.90398 -8.60084 -8.49095 -8.21010 -6.76385 -5.86740 -3.30751 1.29542 1.42478 2.93377 3.27769 3.34136 3.41664 3.43735 3.78578 4.31280 4.40785 4.61626 4.73136 4.81316 4.85783 4.98182 5.00634 5.05391 5.14840 5.29266 5.34165 5.36472 5.38449 5.43101 5.45279 5.47319 5.63527 5.67195 5.68305 5.76700 5.77929 6.00196 6.03048 6.05659 6.06610 6.08952 6.15045 6.30149 6.34911 6.38639 6.42861 6.55986 6.59434 6.69214 6.76129 6.97005 7.00860 7.08125 7.47588 7.70579 7.78937 7.87550 8.29541 8.52710 9.08116 9.69684 10.27075 11.20872 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013042 B = 0.002877 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.452481 B = 9730.376571 C =11118.801046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.092 4.092 3 C -0.120 4.120 4 C -0.101 4.101 5 C -0.066 4.066 6 C -0.102 4.102 7 C 0.510 3.490 8 O -0.533 6.533 9 N -0.608 5.608 10 C 0.112 3.888 11 C -0.123 4.123 12 C 0.080 3.920 13 H 0.051 0.949 14 O -0.387 6.387 15 C 0.040 3.960 16 C 0.137 3.863 17 N -0.585 5.585 18 C -0.254 4.254 19 H 0.069 0.931 20 C 0.005 3.995 21 N -0.900 5.900 22 Si 0.906 3.094 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.288 1.288 26 C 0.135 3.865 27 H 0.074 0.926 28 C 0.107 3.893 29 C -0.102 4.102 30 C -0.120 4.120 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.041 0.959 44 H 0.028 0.972 45 H 0.096 0.904 46 H 0.255 0.745 47 H 0.067 0.933 48 H 0.088 0.912 49 H 0.119 0.881 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.623 -1.243 -19.121 20.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.138 4.138 4 C -0.119 4.119 5 C -0.066 4.066 6 C -0.141 4.141 7 C 0.297 3.703 8 O -0.410 6.410 9 N -0.342 5.342 10 C -0.011 4.011 11 C -0.162 4.162 12 C 0.021 3.979 13 H 0.069 0.931 14 O -0.307 6.307 15 C -0.038 4.038 16 C 0.012 3.988 17 N -0.307 5.307 18 C -0.384 4.384 19 H 0.087 0.913 20 C -0.194 4.194 21 N -0.544 5.544 22 Si 0.735 3.265 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.215 1.215 26 C 0.026 3.974 27 H 0.092 0.908 28 C -0.016 4.016 29 C -0.120 4.120 30 C -0.138 4.138 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.114 0.886 46 H 0.065 0.935 47 H 0.086 0.914 48 H 0.106 0.894 49 H 0.137 0.863 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.012 -1.447 -18.534 20.243 hybrid contribution 0.287 0.716 1.121 1.360 sum -7.725 -0.731 -17.413 19.064 Atomic orbital electron populations 1.20773 0.91439 1.02726 1.01995 1.19887 0.95912 0.93308 1.00136 1.20952 0.94069 0.97428 1.01344 1.20960 0.94209 0.97412 0.99317 1.19307 0.93780 0.93561 0.99974 1.20721 0.93010 1.04762 0.95655 1.20438 0.82101 0.76885 0.90865 1.90732 1.54686 1.49362 1.46198 1.48316 1.04919 1.72722 1.08258 1.21649 0.90845 0.99516 0.89122 1.21805 0.98714 0.98799 0.96868 1.22214 0.93576 0.87859 0.94273 0.93096 1.87713 1.63758 1.40237 1.38947 1.23326 0.94689 1.00198 0.85608 1.21458 0.91196 0.89757 0.96396 1.44312 1.47547 1.29398 1.09445 1.19206 1.43649 0.90667 0.84835 0.91324 1.25068 1.01003 0.95898 0.97447 1.70029 1.52940 1.13294 1.18095 0.86174 0.77419 0.80961 0.81927 1.20203 1.21573 1.21491 1.21585 0.91542 0.96842 0.87389 0.90825 1.22273 0.98438 1.00420 0.80499 1.20955 0.94210 0.97384 0.99442 1.20946 0.94056 0.97416 1.01399 0.91415 0.91663 0.91647 0.86248 0.86243 0.88203 0.88268 0.90640 0.90371 0.90496 0.90434 0.90141 0.94112 0.95361 0.88636 0.93491 0.91441 0.89362 0.86292 0.86273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.01 36.01 0.36 -0.56 16 2 C -0.09 -1.03 5.88 -104.62 -0.62 -1.64 16 3 C -0.12 -1.38 9.70 -39.58 -0.38 -1.76 16 4 C -0.10 -1.25 9.70 -39.58 -0.38 -1.63 16 5 C -0.07 -0.84 4.37 -104.62 -0.46 -1.30 16 6 C -0.10 -1.16 4.18 -29.03 -0.12 -1.29 16 7 C 0.51 8.37 7.69 -10.98 -0.08 8.28 16 8 O -0.53 -11.31 15.45 5.56 0.09 -11.22 16 9 N -0.61 -9.85 2.96 -172.81 -0.51 -10.36 16 10 C 0.11 1.38 6.18 -3.70 -0.02 1.35 16 11 C -0.12 -1.57 5.82 -26.90 -0.16 -1.73 16 12 C 0.08 1.39 2.72 -26.89 -0.07 1.31 16 13 H 0.05 0.91 8.13 -51.93 -0.42 0.49 16 14 O -0.39 -7.06 9.59 -35.23 -0.34 -7.40 16 15 C 0.04 0.75 6.98 37.27 0.26 1.01 16 16 C 0.14 3.19 4.93 -3.56 -0.02 3.17 16 17 N -0.58 -14.29 2.71 -163.90 -0.44 -14.73 16 18 C -0.25 -6.88 9.69 -15.06 -0.15 -7.02 16 19 H 0.07 1.84 7.88 -52.48 -0.41 1.43 16 20 C 0.00 0.14 4.96 -17.43 -0.09 0.05 16 21 N -0.90 -25.72 11.14 55.49 0.62 -25.10 16 22 Si 0.91 21.58 29.59 -169.99 -5.03 16.55 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 C 0.14 2.79 3.02 -67.10 -0.20 2.59 16 27 H 0.07 1.57 7.99 -51.93 -0.42 1.16 16 28 C 0.11 2.20 5.62 -3.74 -0.02 2.18 16 29 C -0.10 -1.25 9.70 -39.58 -0.38 -1.64 16 30 C -0.12 -1.37 9.70 -39.58 -0.38 -1.76 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 33 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 34 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 36 H 0.10 0.91 7.66 -51.94 -0.40 0.51 16 37 H 0.10 0.91 7.87 -51.93 -0.41 0.50 16 38 H 0.08 0.97 7.95 -51.93 -0.41 0.56 16 39 H 0.08 0.69 5.94 -51.93 -0.31 0.38 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.03 0.70 7.17 -51.93 -0.37 0.33 16 45 H 0.10 2.45 6.14 -51.93 -0.32 2.13 16 46 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 47 H 0.07 1.48 6.56 -51.93 -0.34 1.14 16 48 H 0.09 2.14 7.00 -51.93 -0.36 1.77 16 49 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 50 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 391.34 15.07 5.90 5.90 Total: -1.00 -32.67 391.34 -10.60 -43.27 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -7.95 Total: 3.47 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -2.92 Total: -0.38 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.34 Total: -50.19 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.25 Total: -18.62 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.67 -10.60 -43.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074288834.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.040 kcal (2) G-P(sol) polarization free energy of solvation -32.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds