Wall clock time and date at job start Wed Apr 1 2020 02:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38258 * 120.00338 * 2 1 4 4 C 1.38208 * 120.00320 * 180.02562 * 3 2 1 5 5 C 1.38261 * 119.99611 * 359.76716 * 4 3 2 6 6 C 1.38216 * 120.00314 * 0.46051 * 5 4 3 7 7 C 1.50692 * 120.00310 * 179.78763 * 6 5 4 8 8 C 1.50696 * 109.47433 * 269.73116 * 7 6 5 9 9 O 1.21281 * 119.99900 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00412 * 179.97438 * 8 7 6 11 11 C 1.46834 * 120.40681 * 359.97438 * 10 8 7 12 12 C 1.53368 * 109.25778 * 127.78625 * 11 10 8 13 13 C 1.52790 * 108.80811 * 53.82800 * 12 11 10 14 14 H 1.09001 * 109.34685 * 56.66793 * 13 12 11 15 15 O 1.42606 * 111.11293 * 177.45598 * 13 12 11 16 16 C 1.43143 * 113.63447 * 183.59352 * 15 13 12 17 17 C 1.53197 * 109.74120 * 298.30434 * 16 15 13 18 18 N 1.47356 * 108.79211 * 51.22796 * 17 16 15 19 19 C 1.36935 * 121.30375 * 129.72492 * 18 17 16 20 20 H 1.07994 * 119.99992 * 207.15709 * 19 18 17 21 21 C 1.38810 * 119.99517 * 27.44183 * 19 18 17 22 22 N 1.31615 * 120.00624 * 13.85758 * 21 19 18 23 23 Si 1.86800 * 119.99630 * 193.85923 * 21 19 18 24 24 H 1.48504 * 109.47055 * 59.99870 * 23 21 19 25 25 H 1.48496 * 109.47378 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47390 * 299.99991 * 23 21 19 27 27 C 1.46871 * 117.39279 * 310.00249 * 18 17 16 28 28 H 1.09010 * 109.65427 * 292.08447 * 27 18 17 29 29 C 1.47135 * 120.41045 * 180.02562 * 10 8 7 30 30 C 1.38215 * 119.99713 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47398 * 270.02418 * 1 2 3 32 32 H 1.09003 * 109.46926 * 30.02511 * 1 2 3 33 33 H 1.08995 * 109.47542 * 150.01992 * 1 2 3 34 34 H 1.08003 * 119.99868 * 359.97438 * 3 2 1 35 35 H 1.07994 * 120.00517 * 179.97438 * 4 3 2 36 36 H 1.08002 * 120.00014 * 180.25495 * 5 4 3 37 37 H 1.08993 * 109.47321 * 149.72687 * 7 6 5 38 38 H 1.09001 * 109.47072 * 29.73201 * 7 6 5 39 39 H 1.09005 * 109.50749 * 7.85149 * 11 10 8 40 40 H 1.09003 * 109.54717 * 247.74442 * 11 10 8 41 41 H 1.09006 * 109.58030 * 294.03268 * 12 11 10 42 42 H 1.09001 * 109.69550 * 173.69443 * 12 11 10 43 43 H 1.09003 * 109.42459 * 178.22423 * 16 15 13 44 44 H 1.08997 * 109.38704 * 58.36205 * 16 15 13 45 45 H 1.09006 * 109.58299 * 291.43630 * 17 16 15 46 46 H 1.09004 * 109.69931 * 171.08587 * 17 16 15 47 47 H 0.96999 * 120.00214 * 179.97438 * 22 21 19 48 48 H 1.08997 * 109.72314 * 352.86141 * 29 10 8 49 49 H 1.09005 * 109.72637 * 113.49253 * 29 10 8 50 50 H 1.08004 * 119.99904 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2716 -0.0001 0.0038 6 6 3.5806 -1.1971 -0.0010 7 6 4.3340 -2.5022 -0.0011 8 6 4.5842 -2.9377 -1.4219 9 8 4.1891 -2.2557 -2.3437 10 7 5.2469 -4.0851 -1.6683 11 6 5.7297 -4.9174 -0.5591 12 6 5.2399 -6.3573 -0.7568 13 6 5.6575 -6.8331 -2.1473 14 1 6.7387 -6.7408 -2.2510 15 8 5.2767 -8.1905 -2.3616 16 6 5.7141 -8.7177 -3.6185 17 6 5.0813 -7.9195 -4.7628 18 7 5.3187 -6.4842 -4.5284 19 6 5.8364 -5.6794 -5.5078 20 1 6.4010 -4.7984 -5.2404 21 6 5.6306 -5.9927 -6.8443 22 7 4.7259 -6.8883 -7.1786 23 14 6.6377 -5.1433 -8.1685 24 1 8.0794 -5.4259 -7.9516 25 1 6.2287 -5.6502 -9.5031 26 1 6.4054 -3.6780 -8.1037 27 6 4.9841 -5.9519 -3.2010 28 1 3.9036 -5.9751 -3.0584 29 6 5.4966 -4.5186 -3.0520 30 6 2.1980 -1.1970 0.0005 31 1 -0.3634 0.0004 1.0276 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3634 -0.8901 -0.5135 34 1 1.6584 2.1327 -0.0004 35 1 4.1205 2.1325 -0.0010 36 1 5.3517 -0.0002 0.0075 37 1 3.7453 -3.2616 0.5134 38 1 5.2867 -2.3717 0.5121 39 1 5.3439 -4.5278 0.3830 40 1 6.8194 -4.9030 -0.5398 41 1 4.1537 -6.3887 -0.6708 42 1 5.6851 -7.0038 -0.0005 43 1 5.4151 -9.7630 -3.6970 44 1 6.7997 -8.6454 -3.6831 45 1 4.0089 -8.1122 -4.7934 46 1 5.5327 -8.2144 -5.7101 47 1 4.5818 -7.1069 -8.1126 48 1 4.9695 -3.8618 -3.7440 49 1 6.5663 -4.4892 -3.2594 50 1 1.6579 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074323951.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:18 Heat of formation + Delta-G solvation = -48.188752 kcal Electronic energy + Delta-G solvation = -30921.966602 eV Core-core repulsion = 26913.767590 eV Total energy + Delta-G solvation = -4008.199012 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.60410 -40.50809 -39.65734 -37.40916 -36.55979 -34.51876 -33.53011 -33.03568 -32.77432 -31.44634 -29.45608 -28.48456 -27.68243 -26.46292 -25.46146 -23.81752 -23.14893 -22.78752 -21.81875 -21.34387 -19.89584 -18.71587 -18.38764 -17.41457 -17.18762 -17.06717 -16.79979 -16.66900 -16.28191 -16.03717 -15.69478 -15.51610 -15.38880 -14.96240 -14.71124 -14.63030 -14.43735 -14.10696 -14.01116 -13.87664 -13.74755 -13.32277 -13.23312 -13.01080 -12.83533 -12.79105 -12.75031 -12.65528 -12.41502 -12.32503 -12.10307 -11.94094 -11.89183 -11.82904 -11.72568 -11.26943 -10.89388 -10.76448 -10.54467 -9.69316 -9.66157 -9.45529 -8.76635 -7.93811 -5.42970 0.43150 0.52351 1.42496 1.44378 1.50820 1.63161 1.94608 2.44510 2.80873 2.88595 3.21481 3.43206 3.62515 3.72244 3.88706 3.92677 3.99385 4.07286 4.09230 4.19220 4.25731 4.26749 4.38366 4.40353 4.46820 4.50082 4.53919 4.56731 4.62092 4.63244 4.71063 4.81525 4.82720 4.84200 4.87151 4.98787 5.00631 5.10632 5.12402 5.21033 5.31091 5.31532 5.44053 5.53375 5.57956 5.59549 5.67216 5.72289 6.16245 6.23677 6.32717 6.44308 7.02408 7.19412 7.69955 8.24726 9.12194 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011811 B = 0.003068 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.126897 B = 9125.170251 C =10393.024123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.101 4.101 3 C -0.134 4.134 4 C -0.126 4.126 5 C -0.127 4.127 6 C -0.076 4.076 7 C -0.090 4.090 8 C 0.508 3.492 9 O -0.587 6.587 10 N -0.612 5.612 11 C 0.108 3.892 12 C -0.117 4.117 13 C 0.080 3.920 14 H 0.056 0.944 15 O -0.392 6.392 16 C 0.052 3.948 17 C 0.146 3.854 18 N -0.607 5.607 19 C -0.263 4.263 20 H 0.074 0.926 21 C -0.048 4.048 22 N -0.936 5.936 23 Si 0.967 3.033 24 H -0.270 1.270 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.134 3.866 28 H 0.001 0.999 29 C 0.140 3.860 30 C -0.127 4.127 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.139 0.861 39 H 0.134 0.866 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.116 0.884 43 H 0.109 0.891 44 H 0.050 0.950 45 H -0.006 1.006 46 H 0.072 0.928 47 H 0.251 0.749 48 H 0.055 0.945 49 H 0.070 0.930 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.389 8.445 22.464 24.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.101 4.101 3 C -0.151 4.151 4 C -0.143 4.143 5 C -0.145 4.145 6 C -0.076 4.076 7 C -0.129 4.129 8 C 0.298 3.702 9 O -0.466 6.466 10 N -0.345 5.345 11 C -0.013 4.013 12 C -0.155 4.155 13 C 0.021 3.979 14 H 0.074 0.926 15 O -0.311 6.311 16 C -0.026 4.026 17 C 0.020 3.980 18 N -0.332 5.332 19 C -0.392 4.392 20 H 0.091 0.909 21 C -0.243 4.243 22 N -0.582 5.582 23 Si 0.795 3.205 24 H -0.196 1.196 25 H -0.217 1.217 26 H -0.208 1.208 27 C 0.027 3.973 28 H 0.018 0.982 29 C 0.016 3.984 30 C -0.145 4.145 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.156 0.844 35 H 0.159 0.841 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.157 0.843 39 H 0.152 0.848 40 H 0.111 0.889 41 H 0.085 0.915 42 H 0.134 0.866 43 H 0.127 0.873 44 H 0.068 0.932 45 H 0.012 0.988 46 H 0.090 0.910 47 H 0.061 0.939 48 H 0.074 0.926 49 H 0.088 0.912 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.042 8.647 21.949 23.591 hybrid contribution 0.121 0.221 -2.105 2.120 sum 0.163 8.868 19.845 21.737 Atomic orbital electron populations 1.20815 0.89836 1.03066 1.03174 1.20228 0.97359 0.93191 0.99370 1.21316 0.94624 0.98079 1.01123 1.21405 0.94672 0.98605 0.99655 1.21243 1.00508 0.92258 1.00506 1.19528 0.93741 0.94601 0.99728 1.20792 1.04178 0.96044 0.91898 1.21393 0.76262 0.79934 0.92611 1.90723 1.52303 1.55143 1.48458 1.48376 1.56389 1.22728 1.07023 1.22125 1.01044 0.88460 0.89696 1.21905 1.02467 0.96800 0.94356 1.22447 0.97714 0.81962 0.95796 0.92610 1.87748 1.79471 1.26852 1.37003 1.23170 0.98095 0.97938 0.83348 1.21326 0.96048 0.83177 0.97424 1.44316 1.74585 1.04924 1.09367 1.19416 1.26007 1.07683 0.86110 0.90886 1.25837 0.98613 1.00291 0.99600 1.70151 1.34168 1.37163 1.16704 0.85350 0.78978 0.78019 0.78185 1.19551 1.21745 1.20834 1.21366 0.95317 0.93379 0.87258 0.98158 1.21202 1.00094 0.94078 0.82980 1.21110 0.93962 0.98257 1.01216 0.89674 0.90773 0.91985 0.84353 0.84143 0.85046 0.85172 0.84332 0.84774 0.88868 0.91470 0.86592 0.87306 0.93179 0.98777 0.90974 0.93945 0.92638 0.91193 0.86076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 10.01 71.24 0.71 -1.17 16 2 C -0.10 -2.25 5.88 -19.87 -0.12 -2.36 16 3 C -0.13 -2.74 9.70 22.27 0.22 -2.53 16 4 C -0.13 -2.58 10.05 22.27 0.22 -2.36 16 5 C -0.13 -2.82 9.70 22.27 0.22 -2.60 16 6 C -0.08 -1.76 4.37 -19.87 -0.09 -1.85 16 7 C -0.09 -1.69 4.17 29.10 0.12 -1.57 16 8 C 0.51 15.50 7.69 87.66 0.67 16.18 16 9 O -0.59 -24.85 15.43 -3.03 -0.05 -24.90 16 10 N -0.61 -17.95 2.98 -818.73 -2.44 -20.39 16 11 C 0.11 1.94 6.32 86.44 0.55 2.49 16 12 C -0.12 -2.63 5.82 30.65 0.18 -2.45 16 13 C 0.08 2.73 2.47 30.52 0.08 2.80 16 14 H 0.06 1.88 8.13 -2.39 -0.02 1.86 16 15 O -0.39 -14.64 10.49 -148.98 -1.56 -16.21 16 16 C 0.05 2.01 6.95 72.05 0.50 2.51 16 17 C 0.15 7.26 5.43 86.28 0.47 7.73 16 18 N -0.61 -31.46 3.05 -674.73 -2.06 -33.52 16 19 C -0.26 -14.66 8.89 84.03 0.75 -13.91 16 20 H 0.07 3.96 6.26 -2.91 -0.02 3.95 16 21 C -0.05 -2.73 5.02 84.86 0.43 -2.30 16 22 N -0.94 -56.42 11.06 21.65 0.24 -56.18 16 23 Si 0.97 45.92 29.58 68.60 2.03 47.95 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 26 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 27 C 0.13 5.84 2.99 44.90 0.13 5.97 16 28 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 29 C 0.14 5.63 4.49 86.24 0.39 6.02 16 30 C -0.13 -3.07 9.36 22.27 0.21 -2.86 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.09 8.09 -2.39 -0.02 1.07 16 33 H 0.06 1.09 8.09 -2.39 -0.02 1.07 16 34 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 35 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 36 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 37 H 0.13 1.71 7.60 -2.39 -0.02 1.69 16 38 H 0.14 1.57 7.89 -2.39 -0.02 1.55 16 39 H 0.13 1.23 5.91 -2.38 -0.01 1.22 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 42 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 44 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 45 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 46 H 0.07 3.93 6.16 -2.39 -0.01 3.92 16 47 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 48 H 0.06 2.73 6.80 -2.39 -0.02 2.72 16 49 H 0.07 2.78 7.38 -2.38 -0.02 2.77 16 50 H 0.12 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -79.37 391.21 2.72 -76.65 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.93 Total: 18.87 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 5.63 Total: 7.72 kcal Atomic # 7 Polarization: -105.83 SS G_CDS: -4.26 Total: -110.09 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -1.61 Total: -41.10 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -79.37 2.72 -76.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074323951.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.466 kcal (2) G-P(sol) polarization free energy of solvation -79.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds