Wall clock time and date at job start Wed Apr 1 2020 02:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38261 * 119.99749 * 2 1 4 4 C 1.38208 * 119.99986 * 179.97438 * 3 2 1 5 5 C 1.38267 * 120.00034 * 359.81784 * 4 3 2 6 6 C 1.38218 * 119.99696 * 0.41796 * 5 4 3 7 7 C 1.50695 * 119.99840 * 179.81210 * 6 5 4 8 8 C 1.50698 * 109.46784 * 269.72239 * 7 6 5 9 9 O 1.21278 * 120.00283 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99750 * 180.27567 * 8 7 6 11 11 C 1.46843 * 120.41430 * 359.72230 * 10 8 7 12 12 C 1.53362 * 109.25546 * 232.23072 * 11 10 8 13 13 C 1.52790 * 108.81809 * 306.16633 * 12 11 10 14 14 H 1.08992 * 109.34515 * 302.83744 * 13 12 11 15 15 O 1.42602 * 111.10805 * 182.04587 * 13 12 11 16 16 C 1.43222 * 113.58790 * 175.88558 * 15 13 12 17 17 C 1.53201 * 109.35412 * 62.44479 * 16 15 13 18 18 N 1.47360 * 108.79874 * 308.55662 * 17 16 15 19 19 C 1.36936 * 121.30370 * 230.22068 * 18 17 16 20 20 H 1.08002 * 119.99990 * 152.87453 * 19 18 17 21 21 C 1.38813 * 120.00137 * 332.87730 * 19 18 17 22 22 N 1.31622 * 119.99717 * 344.30228 * 21 19 18 23 23 Si 1.86794 * 119.99961 * 164.30332 * 21 19 18 24 24 H 1.48501 * 109.47068 * 94.42570 * 23 21 19 25 25 H 1.48501 * 109.47160 * 214.42262 * 23 21 19 26 26 H 1.48500 * 109.47281 * 334.42536 * 23 21 19 27 27 C 1.46869 * 117.38608 * 50.24358 * 18 17 16 28 28 H 1.08999 * 109.65423 * 67.64916 * 27 18 17 29 29 C 1.47132 * 120.41313 * 179.44963 * 10 8 7 30 30 C 1.38212 * 120.00094 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.46594 * 270.01813 * 1 2 3 32 32 H 1.08993 * 109.47294 * 30.01759 * 1 2 3 33 33 H 1.09000 * 109.46445 * 150.02089 * 1 2 3 34 34 H 1.07998 * 120.00357 * 0.02562 * 3 2 1 35 35 H 1.07997 * 120.00293 * 180.02562 * 4 3 2 36 36 H 1.07996 * 120.00088 * 180.22871 * 5 4 3 37 37 H 1.09000 * 109.47103 * 149.72214 * 7 6 5 38 38 H 1.08998 * 109.47081 * 29.72374 * 7 6 5 39 39 H 1.09007 * 109.50666 * 352.16603 * 11 10 8 40 40 H 1.09003 * 109.50384 * 112.25050 * 11 10 8 41 41 H 1.08997 * 109.57717 * 65.96560 * 12 11 10 42 42 H 1.09002 * 109.57924 * 186.36607 * 12 11 10 43 43 H 1.08996 * 109.80382 * 302.36545 * 16 15 13 44 44 H 1.08990 * 109.38508 * 182.26380 * 16 15 13 45 45 H 1.09000 * 109.57866 * 188.76206 * 17 16 15 46 46 H 1.08994 * 109.69319 * 68.41908 * 17 16 15 47 47 H 0.97001 * 119.99959 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.72924 * 246.45491 * 29 10 8 49 49 H 1.09000 * 109.72481 * 7.12447 * 29 10 8 50 50 H 1.07995 * 120.00294 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2718 0.0001 0.0049 6 6 3.5807 -1.1969 0.0000 7 6 4.3342 -2.5020 0.0004 8 6 4.5849 -2.9377 -1.4203 9 8 4.1909 -2.2554 -2.3423 10 7 5.2425 -4.0881 -1.6662 11 6 5.7241 -4.9209 -0.5567 12 6 7.2141 -5.2216 -0.7598 13 6 7.4101 -5.8255 -2.1495 14 1 6.7934 -6.7191 -2.2451 15 8 8.7763 -6.1683 -2.3724 16 6 9.0054 -6.8252 -3.6243 17 6 8.6278 -5.8807 -4.7699 18 7 7.2684 -5.3643 -4.5312 19 6 6.3085 -5.4099 -5.5067 20 1 5.2642 -5.4543 -5.2350 21 6 6.6777 -5.3991 -6.8448 22 7 7.8961 -5.0387 -7.1884 23 14 5.4453 -5.8959 -8.1577 24 1 4.7710 -4.6836 -8.6877 25 1 6.1526 -6.5918 -9.2625 26 1 4.4326 -6.8071 -7.5666 27 6 6.9838 -4.7984 -3.2061 28 1 7.5504 -3.8771 -3.0715 29 6 5.4817 -4.5283 -3.0496 30 6 2.1981 -1.1969 0.0005 31 1 -0.3632 0.0003 1.0277 32 1 -0.3633 0.8898 -0.5141 33 1 -0.3632 -0.8902 -0.5135 34 1 1.6583 2.1327 0.0004 35 1 4.1204 2.1327 0.0010 36 1 5.3517 0.0001 0.0090 37 1 3.7453 -3.2613 0.5148 38 1 5.2868 -2.3713 0.5139 39 1 5.5850 -4.3891 0.3846 40 1 5.1634 -5.8554 -0.5331 41 1 7.7874 -4.2981 -0.6786 42 1 7.5502 -5.9302 -0.0028 43 1 8.3981 -7.7284 -3.6840 44 1 10.0592 -7.0909 -3.7059 45 1 8.6515 -6.4243 -5.7144 46 1 9.3326 -5.0502 -4.8086 47 1 8.1542 -5.0315 -8.1234 48 1 4.9184 -5.4401 -3.2482 49 1 5.1729 -3.7461 -3.7431 50 1 1.6582 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074323952.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:23 Heat of formation + Delta-G solvation = -27.901261 kcal Electronic energy + Delta-G solvation = -30888.725686 eV Core-core repulsion = 26881.406406 eV Total energy + Delta-G solvation = -4007.319280 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.34024 -39.36660 -38.36944 -36.03521 -34.71331 -33.60001 -32.21906 -31.65476 -31.37593 -29.93034 -28.20912 -27.04543 -26.72550 -24.95178 -23.93450 -22.41029 -22.00507 -21.55100 -20.71196 -19.69301 -18.73679 -17.13969 -16.86186 -16.51709 -15.87127 -15.64932 -15.42042 -15.18445 -14.98957 -14.75643 -14.40873 -14.03942 -13.83850 -13.76657 -13.51234 -13.22223 -13.06680 -12.99889 -12.89951 -12.71463 -12.57137 -12.37578 -12.00995 -11.93468 -11.80065 -11.35230 -11.15566 -11.04608 -11.02180 -10.92687 -10.82759 -10.59118 -10.26870 -10.23825 -9.98461 -9.65385 -9.59603 -8.99164 -8.80680 -8.61449 -8.53927 -8.34326 -6.73758 -5.84253 -3.29086 1.29280 1.37245 2.83033 3.14857 3.35690 3.42943 3.44143 3.74067 4.23174 4.42762 4.54261 4.68377 4.72843 4.81972 4.88960 5.04729 5.12570 5.19510 5.20592 5.27259 5.34910 5.38405 5.39724 5.42269 5.45386 5.53506 5.60585 5.68424 5.69041 5.73404 5.87551 5.93478 6.01106 6.06657 6.08364 6.13871 6.23789 6.32320 6.41824 6.45463 6.50800 6.56303 6.64761 6.70923 6.86982 6.97743 7.12172 7.49910 7.62079 7.71405 7.87612 8.31836 8.40833 9.09660 9.73246 10.30785 11.23966 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012059 B = 0.003057 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.374569 B = 9158.115467 C =10657.232382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.124 4.124 4 C -0.116 4.116 5 C -0.110 4.110 6 C -0.058 4.058 7 C -0.102 4.102 8 C 0.513 3.487 9 O -0.527 6.527 10 N -0.613 5.613 11 C 0.111 3.889 12 C -0.125 4.125 13 C 0.076 3.924 14 H 0.053 0.947 15 O -0.390 6.390 16 C 0.039 3.961 17 C 0.142 3.858 18 N -0.588 5.588 19 C -0.258 4.258 20 H 0.072 0.928 21 C 0.006 3.994 22 N -0.901 5.901 23 Si 0.903 3.097 24 H -0.286 1.286 25 H -0.289 1.289 26 H -0.278 1.278 27 C 0.138 3.862 28 H 0.037 0.963 29 C 0.124 3.876 30 C -0.106 4.106 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.041 0.959 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.028 0.972 47 H 0.255 0.745 48 H 0.071 0.929 49 H 0.101 0.899 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.619 4.116 19.193 21.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.142 4.142 4 C -0.134 4.134 5 C -0.128 4.128 6 C -0.058 4.058 7 C -0.142 4.142 8 C 0.300 3.700 9 O -0.403 6.403 10 N -0.348 5.348 11 C -0.012 4.012 12 C -0.163 4.163 13 C 0.017 3.983 14 H 0.071 0.929 15 O -0.309 6.309 16 C -0.038 4.038 17 C 0.016 3.984 18 N -0.313 5.313 19 C -0.387 4.387 20 H 0.089 0.911 21 C -0.193 4.193 22 N -0.545 5.545 23 Si 0.732 3.268 24 H -0.213 1.213 25 H -0.215 1.215 26 H -0.203 1.203 27 C 0.030 3.970 28 H 0.054 0.946 29 C 0.003 3.997 30 C -0.124 4.124 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.060 0.940 44 H 0.099 0.901 45 H 0.113 0.887 46 H 0.046 0.954 47 H 0.065 0.935 48 H 0.090 0.910 49 H 0.120 0.880 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.635 4.531 18.613 20.622 hybrid contribution -0.476 -0.368 -1.083 1.239 sum -8.110 4.162 17.530 19.758 Atomic orbital electron populations 1.20776 0.91334 1.02835 1.02025 1.19850 0.95949 0.93135 0.99903 1.20985 0.94289 0.97342 1.01551 1.21068 0.94289 0.97860 1.00140 1.20978 0.99753 0.92007 1.00066 1.19282 0.93493 0.93701 0.99374 1.20734 1.01974 0.96057 0.95465 1.20432 0.78089 0.80457 0.90994 1.90746 1.50323 1.53090 1.46147 1.48305 1.56399 1.22162 1.07935 1.21704 0.94344 0.95519 0.89644 1.21850 0.95592 1.01972 0.96916 1.22440 0.84058 0.97508 0.94339 0.92947 1.87755 1.25636 1.79062 1.38438 1.23343 0.99815 0.95583 0.85102 1.21439 0.85541 0.95138 0.96232 1.44043 1.09931 1.68700 1.08602 1.19132 0.88331 1.45887 0.85348 0.91057 1.25064 0.96786 0.99893 0.97538 1.70025 1.18555 1.49466 1.16455 0.86272 0.80562 0.78412 0.81516 1.21260 1.21491 1.20331 1.21391 0.93475 0.94488 0.87687 0.94580 1.21834 0.96174 1.01109 0.80599 1.20832 0.93369 0.97573 1.00586 0.91369 0.91633 0.91543 0.86365 0.86139 0.86246 0.88130 0.87989 0.89562 0.91176 0.90831 0.90253 0.94020 0.90079 0.88734 0.95414 0.93511 0.91043 0.88044 0.86356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 2 C -0.09 -0.99 5.88 -104.62 -0.62 -1.60 16 3 C -0.12 -1.34 9.70 -39.58 -0.38 -1.73 16 4 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 5 C -0.11 -1.34 9.70 -39.58 -0.38 -1.73 16 6 C -0.06 -0.72 4.37 -104.62 -0.46 -1.18 16 7 C -0.10 -1.12 4.17 -29.04 -0.12 -1.24 16 8 C 0.51 8.07 7.69 -10.99 -0.08 7.99 16 9 O -0.53 -10.81 15.43 5.56 0.09 -10.73 16 10 N -0.61 -9.43 2.97 -172.42 -0.51 -9.94 16 11 C 0.11 1.25 6.31 -3.67 -0.02 1.22 16 12 C -0.12 -1.64 5.82 -26.65 -0.16 -1.79 16 13 C 0.08 1.36 2.49 -26.63 -0.07 1.29 16 14 H 0.05 0.95 8.13 -51.93 -0.42 0.53 16 15 O -0.39 -7.59 10.47 -35.23 -0.37 -7.96 16 16 C 0.04 0.77 6.97 37.26 0.26 1.03 16 17 C 0.14 3.39 5.42 -3.47 -0.02 3.37 16 18 N -0.59 -14.65 3.04 -164.09 -0.50 -15.15 16 19 C -0.26 -6.94 8.88 -15.06 -0.13 -7.07 16 20 H 0.07 1.87 6.27 -52.49 -0.33 1.54 16 21 C 0.01 0.17 4.98 -17.43 -0.09 0.09 16 22 N -0.90 -25.99 11.16 55.49 0.62 -25.38 16 23 Si 0.90 21.69 29.58 -169.99 -5.03 16.66 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 C 0.14 2.92 3.03 -67.30 -0.20 2.71 16 28 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 29 C 0.12 2.44 4.50 -3.48 -0.02 2.42 16 30 C -0.11 -1.26 9.36 -39.58 -0.37 -1.64 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 34 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 36 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.10 0.83 7.90 -51.93 -0.41 0.42 16 38 H 0.10 0.89 7.60 -51.93 -0.39 0.49 16 39 H 0.09 0.68 5.91 -51.93 -0.31 0.37 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 45 H 0.09 2.45 6.22 -51.93 -0.32 2.13 16 46 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 48 H 0.07 1.40 7.40 -51.93 -0.38 1.01 16 49 H 0.10 2.34 6.79 -51.93 -0.35 1.98 16 50 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 391.37 15.07 5.90 5.90 Total: -1.00 -33.40 391.37 -10.68 -44.07 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -7.97 Total: 2.66 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -2.90 Total: -0.13 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.39 Total: -50.47 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.28 Total: -18.69 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.40 -10.68 -44.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074323952.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.170 kcal (2) G-P(sol) polarization free energy of solvation -33.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds