Wall clock time and date at job start Wed Apr 1 2020 02:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38261 * 119.99749 * 2 1 4 4 C 1.38208 * 119.99986 * 179.97438 * 3 2 1 5 5 C 1.38267 * 120.00034 * 359.81784 * 4 3 2 6 6 C 1.38218 * 119.99696 * 0.41796 * 5 4 3 7 7 C 1.50695 * 119.99840 * 179.81210 * 6 5 4 8 8 C 1.50698 * 109.46784 * 269.72239 * 7 6 5 9 9 O 1.21278 * 120.00283 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99750 * 180.27567 * 8 7 6 11 11 C 1.46843 * 120.41430 * 359.72230 * 10 8 7 12 12 C 1.53362 * 109.25546 * 232.23072 * 11 10 8 13 13 C 1.52790 * 108.81809 * 306.16633 * 12 11 10 14 14 H 1.08992 * 109.34515 * 302.83744 * 13 12 11 15 15 O 1.42602 * 111.10805 * 182.04587 * 13 12 11 16 16 C 1.43222 * 113.58790 * 175.88558 * 15 13 12 17 17 C 1.53201 * 109.35412 * 62.44479 * 16 15 13 18 18 N 1.47360 * 108.79874 * 308.55662 * 17 16 15 19 19 C 1.36936 * 121.30370 * 230.22068 * 18 17 16 20 20 H 1.08002 * 119.99990 * 152.87453 * 19 18 17 21 21 C 1.38813 * 120.00137 * 332.87730 * 19 18 17 22 22 N 1.31622 * 119.99717 * 344.30228 * 21 19 18 23 23 Si 1.86794 * 119.99961 * 164.30332 * 21 19 18 24 24 H 1.48501 * 109.47068 * 94.42570 * 23 21 19 25 25 H 1.48501 * 109.47160 * 214.42262 * 23 21 19 26 26 H 1.48500 * 109.47281 * 334.42536 * 23 21 19 27 27 C 1.46869 * 117.38608 * 50.24358 * 18 17 16 28 28 H 1.08999 * 109.65423 * 67.64916 * 27 18 17 29 29 C 1.47132 * 120.41313 * 179.44963 * 10 8 7 30 30 C 1.38212 * 120.00094 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.46594 * 270.01813 * 1 2 3 32 32 H 1.08993 * 109.47294 * 30.01759 * 1 2 3 33 33 H 1.09000 * 109.46445 * 150.02089 * 1 2 3 34 34 H 1.07998 * 120.00357 * 0.02562 * 3 2 1 35 35 H 1.07997 * 120.00293 * 180.02562 * 4 3 2 36 36 H 1.07996 * 120.00088 * 180.22871 * 5 4 3 37 37 H 1.09000 * 109.47103 * 149.72214 * 7 6 5 38 38 H 1.08998 * 109.47081 * 29.72374 * 7 6 5 39 39 H 1.09007 * 109.50666 * 352.16603 * 11 10 8 40 40 H 1.09003 * 109.50384 * 112.25050 * 11 10 8 41 41 H 1.08997 * 109.57717 * 65.96560 * 12 11 10 42 42 H 1.09002 * 109.57924 * 186.36607 * 12 11 10 43 43 H 1.08996 * 109.80382 * 302.36545 * 16 15 13 44 44 H 1.08990 * 109.38508 * 182.26380 * 16 15 13 45 45 H 1.09000 * 109.57866 * 188.76206 * 17 16 15 46 46 H 1.08994 * 109.69319 * 68.41908 * 17 16 15 47 47 H 0.97001 * 119.99959 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.72924 * 246.45491 * 29 10 8 49 49 H 1.09000 * 109.72481 * 7.12447 * 29 10 8 50 50 H 1.07995 * 120.00294 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2718 0.0001 0.0049 6 6 3.5807 -1.1969 0.0000 7 6 4.3342 -2.5020 0.0004 8 6 4.5849 -2.9377 -1.4203 9 8 4.1909 -2.2554 -2.3423 10 7 5.2425 -4.0881 -1.6662 11 6 5.7241 -4.9209 -0.5567 12 6 7.2141 -5.2216 -0.7598 13 6 7.4101 -5.8255 -2.1495 14 1 6.7934 -6.7191 -2.2451 15 8 8.7763 -6.1683 -2.3724 16 6 9.0054 -6.8252 -3.6243 17 6 8.6278 -5.8807 -4.7699 18 7 7.2684 -5.3643 -4.5312 19 6 6.3085 -5.4099 -5.5067 20 1 5.2642 -5.4543 -5.2350 21 6 6.6777 -5.3991 -6.8448 22 7 7.8961 -5.0387 -7.1884 23 14 5.4453 -5.8959 -8.1577 24 1 4.7710 -4.6836 -8.6877 25 1 6.1526 -6.5918 -9.2625 26 1 4.4326 -6.8071 -7.5666 27 6 6.9838 -4.7984 -3.2061 28 1 7.5504 -3.8771 -3.0715 29 6 5.4817 -4.5283 -3.0496 30 6 2.1981 -1.1969 0.0005 31 1 -0.3632 0.0003 1.0277 32 1 -0.3633 0.8898 -0.5141 33 1 -0.3632 -0.8902 -0.5135 34 1 1.6583 2.1327 0.0004 35 1 4.1204 2.1327 0.0010 36 1 5.3517 0.0001 0.0090 37 1 3.7453 -3.2613 0.5148 38 1 5.2868 -2.3713 0.5139 39 1 5.5850 -4.3891 0.3846 40 1 5.1634 -5.8554 -0.5331 41 1 7.7874 -4.2981 -0.6786 42 1 7.5502 -5.9302 -0.0028 43 1 8.3981 -7.7284 -3.6840 44 1 10.0592 -7.0909 -3.7059 45 1 8.6515 -6.4243 -5.7144 46 1 9.3326 -5.0502 -4.8086 47 1 8.1542 -5.0315 -8.1234 48 1 4.9184 -5.4401 -3.2482 49 1 5.1729 -3.7461 -3.7431 50 1 1.6582 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074323952.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:21 Heat of formation + Delta-G solvation = -48.329053 kcal Electronic energy + Delta-G solvation = -30889.611501 eV Core-core repulsion = 26881.406406 eV Total energy + Delta-G solvation = -4008.205096 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.58533 -40.49664 -39.65347 -37.39565 -36.54626 -34.51167 -33.51173 -33.03756 -32.76809 -31.43627 -29.44974 -28.46895 -27.67191 -26.45201 -25.45911 -23.80272 -23.12330 -22.81077 -21.82534 -21.33006 -19.89865 -18.70928 -18.37850 -17.41845 -17.16738 -17.06756 -16.79262 -16.66297 -16.28783 -16.03217 -15.71546 -15.54038 -15.30845 -14.96639 -14.72075 -14.62400 -14.43345 -14.13327 -13.93094 -13.91117 -13.74650 -13.32358 -13.21646 -13.02343 -12.83878 -12.79059 -12.74803 -12.64614 -12.40785 -12.32997 -12.08261 -11.94584 -11.87929 -11.83275 -11.72017 -11.26582 -10.88993 -10.76873 -10.53504 -9.68004 -9.66630 -9.45660 -8.76570 -7.94170 -5.42296 0.42964 0.52300 1.41773 1.43260 1.52747 1.63677 1.95073 2.44668 2.81260 2.88653 3.21136 3.43804 3.62801 3.72179 3.91068 3.91853 3.99727 4.07363 4.09422 4.18972 4.25624 4.27029 4.38242 4.40405 4.47208 4.50562 4.53138 4.57005 4.61863 4.65570 4.71027 4.82492 4.84119 4.84690 4.86833 4.99777 5.00747 5.10606 5.12231 5.21519 5.31408 5.31986 5.44554 5.52438 5.57971 5.60100 5.67520 5.72035 6.16143 6.23712 6.32808 6.44700 7.02179 7.19804 7.70222 8.25213 9.12103 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012059 B = 0.003057 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.374569 B = 9158.115467 C =10657.232382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.100 4.100 3 C -0.134 4.134 4 C -0.127 4.127 5 C -0.131 4.131 6 C -0.075 4.075 7 C -0.090 4.090 8 C 0.508 3.492 9 O -0.587 6.587 10 N -0.612 5.612 11 C 0.108 3.892 12 C -0.117 4.117 13 C 0.080 3.920 14 H 0.058 0.942 15 O -0.392 6.392 16 C 0.053 3.947 17 C 0.146 3.854 18 N -0.607 5.607 19 C -0.261 4.261 20 H 0.074 0.926 21 C -0.049 4.049 22 N -0.936 5.936 23 Si 0.966 3.034 24 H -0.292 1.292 25 H -0.287 1.287 26 H -0.265 1.265 27 C 0.134 3.866 28 H 0.002 0.998 29 C 0.140 3.860 30 C -0.123 4.123 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.124 0.876 37 H 0.138 0.862 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.116 0.884 43 H 0.052 0.948 44 H 0.109 0.891 45 H 0.069 0.931 46 H -0.006 1.006 47 H 0.251 0.749 48 H 0.071 0.929 49 H 0.055 0.945 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.868 2.947 22.571 24.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.152 4.152 4 C -0.145 4.145 5 C -0.149 4.149 6 C -0.076 4.076 7 C -0.129 4.129 8 C 0.298 3.702 9 O -0.466 6.466 10 N -0.345 5.345 11 C -0.013 4.013 12 C -0.155 4.155 13 C 0.020 3.980 14 H 0.075 0.925 15 O -0.311 6.311 16 C -0.025 4.025 17 C 0.020 3.980 18 N -0.332 5.332 19 C -0.391 4.391 20 H 0.091 0.909 21 C -0.244 4.244 22 N -0.581 5.581 23 Si 0.793 3.207 24 H -0.219 1.219 25 H -0.213 1.213 26 H -0.189 1.189 27 C 0.027 3.973 28 H 0.020 0.980 29 C 0.016 3.984 30 C -0.141 4.141 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.142 0.858 37 H 0.155 0.845 38 H 0.149 0.851 39 H 0.152 0.848 40 H 0.111 0.889 41 H 0.085 0.915 42 H 0.134 0.866 43 H 0.070 0.930 44 H 0.127 0.873 45 H 0.087 0.913 46 H 0.012 0.988 47 H 0.060 0.940 48 H 0.089 0.911 49 H 0.073 0.927 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.881 3.335 22.063 24.016 hybrid contribution -0.092 0.099 -2.123 2.127 sum -8.973 3.434 19.940 22.133 Atomic orbital electron populations 1.20814 0.89558 1.03190 1.03212 1.20251 0.97483 0.93092 0.99216 1.21314 0.94409 0.98291 1.01139 1.21382 0.94861 0.98441 0.99840 1.21232 1.00292 0.92629 1.00794 1.19530 0.93963 0.94384 0.99710 1.20794 1.03941 0.96254 0.91925 1.21390 0.76701 0.79521 0.92599 1.90722 1.52692 1.54786 1.48430 1.48383 1.56289 1.22803 1.07060 1.22127 0.92954 0.96574 0.89666 1.21906 0.97061 1.02182 0.94391 1.22560 0.83177 0.96498 0.95743 0.92451 1.87766 1.26740 1.78937 1.37689 1.23175 1.01636 0.94308 0.83367 1.21309 0.84688 0.94642 0.97340 1.44352 1.09866 1.69204 1.09742 1.19443 0.88993 1.44543 0.86097 0.90880 1.25832 0.98499 1.00573 0.99528 1.70182 1.20329 1.51216 1.16412 0.85288 0.78624 0.77811 0.78932 1.21924 1.21323 1.18903 1.21548 0.94247 0.94262 0.87239 0.98020 1.21302 0.94773 0.99358 0.82941 1.21113 0.93610 0.98437 1.00924 0.89677 0.90898 0.91575 0.84376 0.84521 0.85763 0.84451 0.85063 0.84800 0.88883 0.91469 0.86620 0.92990 0.87336 0.91258 0.98757 0.93980 0.91107 0.92668 0.85333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 10.01 71.24 0.71 -0.97 16 2 C -0.10 -2.12 5.88 -19.86 -0.12 -2.24 16 3 C -0.13 -2.76 9.70 22.27 0.22 -2.54 16 4 C -0.13 -2.77 10.05 22.27 0.22 -2.55 16 5 C -0.13 -3.11 9.70 22.27 0.22 -2.90 16 6 C -0.08 -1.76 4.37 -19.87 -0.09 -1.85 16 7 C -0.09 -1.69 4.17 29.10 0.12 -1.56 16 8 C 0.51 15.48 7.69 87.66 0.67 16.15 16 9 O -0.59 -24.82 15.43 -3.02 -0.05 -24.87 16 10 N -0.61 -17.91 2.97 -817.81 -2.43 -20.34 16 11 C 0.11 1.93 6.31 86.44 0.55 2.48 16 12 C -0.12 -2.62 5.82 30.65 0.18 -2.44 16 13 C 0.08 2.69 2.49 30.66 0.08 2.77 16 14 H 0.06 1.92 8.13 -2.39 -0.02 1.90 16 15 O -0.39 -14.62 10.47 -148.98 -1.56 -16.18 16 16 C 0.05 2.02 6.97 72.05 0.50 2.52 16 17 C 0.15 7.24 5.42 86.28 0.47 7.71 16 18 N -0.61 -31.37 3.04 -673.07 -2.05 -33.42 16 19 C -0.26 -14.56 8.88 84.03 0.75 -13.81 16 20 H 0.07 3.97 6.27 -2.91 -0.02 3.95 16 21 C -0.05 -2.78 4.98 84.86 0.42 -2.36 16 22 N -0.94 -56.49 11.16 21.65 0.24 -56.25 16 23 Si 0.97 45.88 29.58 68.60 2.03 47.91 16 24 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 25 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 26 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 27 C 0.13 5.84 3.03 45.20 0.14 5.97 16 28 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 29 C 0.14 5.60 4.50 86.40 0.39 5.99 16 30 C -0.12 -2.78 9.36 22.27 0.21 -2.58 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 0.98 8.09 -2.39 -0.02 0.96 16 33 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 34 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 35 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 36 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 37 H 0.14 1.57 7.90 -2.39 -0.02 1.55 16 38 H 0.13 1.70 7.60 -2.39 -0.02 1.68 16 39 H 0.13 1.22 5.91 -2.38 -0.01 1.21 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 45 H 0.07 3.77 6.22 -2.39 -0.01 3.75 16 46 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 47 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 48 H 0.07 2.81 7.40 -2.39 -0.02 2.79 16 49 H 0.05 2.71 6.79 -2.39 -0.02 2.69 16 50 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -79.48 391.37 2.74 -76.74 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.92 Total: 18.61 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 5.63 Total: 7.81 kcal Atomic # 7 Polarization: -105.77 SS G_CDS: -4.24 Total: -110.01 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -1.61 Total: -41.04 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -79.48 2.74 -76.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074323952.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.406 kcal (2) G-P(sol) polarization free energy of solvation -79.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds