Wall clock time and date at job start Wed Apr 1 2020 02:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38384 * 119.92275 * 2 1 4 4 C 1.38340 * 120.29057 * 179.97438 * 3 2 1 5 5 C 1.37984 * 120.14222 * 359.74440 * 4 3 2 6 6 C 1.39550 * 119.85166 * 0.52765 * 5 4 3 7 7 C 1.47846 * 120.14318 * 179.74823 * 6 5 4 8 8 O 1.21551 * 120.00189 * 230.83598 * 7 6 5 9 9 N 1.34780 * 119.99824 * 50.82898 * 7 6 5 10 10 C 1.46837 * 120.41319 * 5.50719 * 9 7 6 11 11 C 1.53365 * 109.25063 * 127.75042 * 10 9 7 12 12 C 1.52785 * 108.81496 * 53.83461 * 11 10 9 13 13 H 1.09000 * 109.34528 * 57.16287 * 12 11 10 14 14 O 1.42613 * 111.11163 * 177.46919 * 12 11 10 15 15 C 1.43142 * 113.63306 * 183.61212 * 14 12 11 16 16 C 1.53190 * 109.74251 * 298.31910 * 15 14 12 17 17 N 1.47348 * 108.80700 * 51.20775 * 16 15 14 18 18 C 1.36930 * 121.30901 * 130.03330 * 17 16 15 19 19 H 1.08009 * 120.00144 * 210.85574 * 18 17 16 20 20 C 1.38818 * 120.00286 * 30.84947 * 18 17 16 21 21 N 1.31620 * 119.99261 * 11.72153 * 20 18 17 22 22 Si 1.86801 * 120.00331 * 191.72448 * 20 18 17 23 23 H 1.48491 * 109.46825 * 89.99958 * 22 20 18 24 24 H 1.48497 * 109.46924 * 209.99897 * 22 20 18 25 25 H 1.48497 * 109.46628 * 329.99965 * 22 20 18 26 26 C 1.46881 * 117.38799 * 309.76211 * 17 16 15 27 27 H 1.09001 * 109.65344 * 292.35316 * 26 17 16 28 28 C 1.47305 * 119.86979 * 185.06685 * 9 7 6 29 29 C 1.37937 * 119.92976 * 180.02562 * 2 1 3 30 30 C 1.50700 * 120.07187 * 0.02696 * 29 2 1 31 31 H 1.09000 * 109.47120 * 269.97794 * 1 2 3 32 32 H 1.08995 * 109.47206 * 29.98367 * 1 2 3 33 33 H 1.09003 * 109.46580 * 149.98392 * 1 2 3 34 34 H 1.08000 * 119.85469 * 0.02562 * 3 2 1 35 35 H 1.07996 * 119.92699 * 179.97438 * 4 3 2 36 36 H 1.08002 * 120.06690 * 180.25266 * 5 4 3 37 37 H 1.09003 * 109.50148 * 7.82317 * 10 9 7 38 38 H 1.08995 * 109.54922 * 247.71038 * 10 9 7 39 39 H 1.09004 * 109.57939 * 294.03651 * 11 10 9 40 40 H 1.08999 * 109.57949 * 173.63740 * 11 10 9 41 41 H 1.09003 * 109.42416 * 58.39650 * 15 14 12 42 42 H 1.08996 * 109.42721 * 178.28769 * 15 14 12 43 43 H 1.09004 * 109.58260 * 291.40992 * 16 15 14 44 44 H 1.09006 * 109.58345 * 171.00560 * 16 15 14 45 45 H 0.97005 * 119.99718 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.21635 * 113.24524 * 28 9 7 47 47 H 1.08999 * 110.31554 * 352.52376 * 28 9 7 48 48 H 1.08996 * 109.46744 * 266.63781 * 30 29 2 49 49 H 1.08998 * 109.47089 * 26.64213 * 30 29 2 50 50 H 1.09008 * 109.46692 * 146.63906 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1994 0.0000 4 6 3.5807 1.2083 0.0005 5 6 4.2812 0.0195 0.0064 6 6 3.5911 -1.1935 0.0006 7 6 4.3353 -2.4710 0.0012 8 8 4.0705 -3.3290 -0.8180 9 7 5.3074 -2.6841 0.9101 10 6 5.5541 -1.7067 1.9778 11 6 5.5445 -2.4249 3.3329 12 6 6.5361 -3.5861 3.2822 13 1 7.5247 -3.2058 3.0251 14 8 6.6094 -4.2543 4.5400 15 6 7.5842 -5.3019 4.5773 16 6 7.2247 -6.3801 3.5502 17 7 6.9953 -5.7354 2.2452 18 6 7.6053 -6.1936 1.1082 19 1 7.8524 -5.5056 0.3131 20 6 7.9063 -7.5425 0.9773 21 7 7.4071 -8.4136 1.8284 22 14 9.0196 -8.1211 -0.4066 23 1 10.4310 -8.1056 0.0544 24 1 8.6426 -9.5024 -0.8004 25 1 8.8700 -7.2153 -1.5737 26 6 6.0819 -4.5857 2.2108 27 1 5.0663 -4.9178 2.4263 28 6 6.1221 -3.9093 0.8393 29 6 2.1952 -1.1954 -0.0005 30 6 1.4417 -2.5005 -0.0017 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8901 -0.5136 33 1 -0.3632 -0.8899 -0.5141 34 1 1.6537 2.1326 0.0004 35 1 4.1134 2.1477 0.0001 36 1 5.3612 0.0278 0.0109 37 1 4.7728 -0.9468 1.9631 38 1 6.5242 -1.2345 1.8230 39 1 4.5443 -2.8073 3.5365 40 1 5.8380 -1.7278 4.1178 41 1 8.5665 -4.8915 4.3432 42 1 7.6038 -5.7435 5.5736 43 1 6.3190 -6.8980 3.8660 44 1 8.0451 -7.0929 3.4664 45 1 7.6171 -9.3562 1.7368 46 1 7.1494 -3.6432 0.5903 47 1 5.7232 -4.5859 0.0835 48 1 1.3119 -2.8460 1.0239 49 1 0.4648 -2.3556 -0.4628 50 1 2.0038 -3.2440 -0.5672 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074394159.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:34 Heat of formation + Delta-G solvation = -23.674015 kcal Electronic energy + Delta-G solvation = -31646.381210 eV Core-core repulsion = 27639.245237 eV Total energy + Delta-G solvation = -4007.135973 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.69272 -39.30130 -38.18809 -36.08303 -34.71084 -33.65179 -32.47561 -31.55296 -31.37403 -29.86748 -28.02163 -26.96794 -26.62292 -25.32681 -23.94401 -23.24541 -21.97376 -21.18071 -20.93604 -19.71893 -19.00813 -17.16731 -16.82305 -16.23363 -16.11251 -15.70504 -15.36571 -15.21400 -14.91139 -14.41110 -14.35836 -14.20304 -13.85329 -13.59007 -13.48769 -13.18130 -13.07928 -12.88177 -12.86309 -12.76564 -12.64581 -12.57210 -12.01908 -11.82093 -11.75501 -11.61790 -11.30217 -11.04032 -10.98075 -10.94737 -10.81172 -10.63381 -10.25514 -10.21112 -10.03451 -9.62974 -9.57744 -8.98733 -8.86517 -8.72781 -8.55408 -8.35855 -6.69173 -5.84657 -3.34464 0.89879 1.17410 2.80196 3.11741 3.34996 3.42314 3.43660 3.59105 4.23556 4.42159 4.48304 4.58815 4.68481 4.79935 4.90910 4.97464 5.12789 5.16527 5.30599 5.33621 5.35978 5.38443 5.41924 5.49741 5.55813 5.64642 5.67851 5.70687 5.74732 5.77631 5.84412 5.90908 5.94040 6.10152 6.13507 6.18579 6.20374 6.26040 6.27681 6.32748 6.45763 6.47895 6.65019 6.71592 6.78534 6.87147 7.11609 7.49837 7.58298 7.71389 7.88638 8.32076 8.35075 9.09782 9.71661 10.31597 11.23264 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014551 B = 0.003310 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.841459 B = 8456.240977 C = 9337.393851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.095 4.095 3 C -0.101 4.101 4 C -0.129 4.129 5 C -0.092 4.092 6 C -0.119 4.119 7 C 0.559 3.441 8 O -0.529 6.529 9 N -0.604 5.604 10 C 0.110 3.890 11 C -0.124 4.124 12 C 0.078 3.922 13 H 0.052 0.948 14 O -0.389 6.389 15 C 0.039 3.961 16 C 0.145 3.855 17 N -0.587 5.587 18 C -0.261 4.261 19 H 0.070 0.930 20 C 0.010 3.990 21 N -0.901 5.901 22 Si 0.904 3.096 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.277 1.277 26 C 0.137 3.863 27 H 0.036 0.964 28 C 0.125 3.875 29 C -0.034 4.034 30 C -0.140 4.140 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.040 0.960 42 H 0.081 0.919 43 H 0.028 0.972 44 H 0.092 0.908 45 H 0.255 0.745 46 H 0.072 0.928 47 H 0.105 0.895 48 H 0.072 0.928 49 H 0.071 0.929 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.688 19.638 1.022 21.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.095 4.095 3 C -0.120 4.120 4 C -0.147 4.147 5 C -0.110 4.110 6 C -0.122 4.122 7 C 0.346 3.654 8 O -0.406 6.406 9 N -0.337 5.337 10 C -0.013 4.013 11 C -0.162 4.162 12 C 0.018 3.982 13 H 0.070 0.930 14 O -0.309 6.309 15 C -0.039 4.039 16 C 0.019 3.981 17 N -0.312 5.312 18 C -0.390 4.390 19 H 0.088 0.912 20 C -0.190 4.190 21 N -0.544 5.544 22 Si 0.734 3.266 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.202 1.202 26 C 0.029 3.971 27 H 0.054 0.946 28 C 0.004 3.996 29 C -0.035 4.035 30 C -0.196 4.196 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.059 0.941 42 H 0.099 0.901 43 H 0.047 0.953 44 H 0.110 0.890 45 H 0.066 0.934 46 H 0.090 0.910 47 H 0.123 0.877 48 H 0.090 0.910 49 H 0.090 0.910 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.892 18.999 0.721 20.989 hybrid contribution 0.893 -0.471 -0.721 1.241 sum -7.999 18.528 0.000 20.181 Atomic orbital electron populations 1.20865 0.90939 1.03000 1.02502 1.19719 0.96244 0.92287 1.01224 1.21146 0.94282 0.97381 0.99145 1.21022 0.94195 0.97814 1.01634 1.21267 1.00052 0.91319 0.98371 1.19814 0.93696 0.93504 1.05197 1.18348 0.79215 0.86489 0.81315 1.90764 1.65706 1.45137 1.38963 1.48289 1.34752 1.22420 1.28261 1.21827 1.02101 0.91246 0.86157 1.21847 1.00640 0.97194 0.96556 1.22414 0.97660 0.92312 0.85809 0.93030 1.87741 1.60591 1.50014 1.32519 1.23336 0.90576 0.89565 1.00415 1.21404 1.00928 0.92572 0.83185 1.43997 1.49698 1.33033 1.04467 1.19107 1.32745 0.90846 0.96272 0.91221 1.25185 0.99774 0.95916 0.98084 1.69992 1.44836 1.01526 1.38041 0.86256 0.80337 0.78081 0.81929 1.21340 1.21570 1.20192 1.21291 0.94245 0.89224 0.92307 0.94645 1.21824 0.94181 0.84349 0.99266 1.19760 0.91857 0.95593 0.96304 1.21164 1.00384 0.94841 1.03167 0.91031 0.91587 0.90878 0.85865 0.85563 0.85417 0.89142 0.91216 0.90886 0.90238 0.94138 0.90089 0.95342 0.88999 0.93450 0.90965 0.87672 0.90971 0.91004 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 9.60 36.01 0.35 -0.54 16 2 C -0.09 -0.97 5.87 -104.68 -0.61 -1.58 16 3 C -0.10 -0.90 9.69 -39.49 -0.38 -1.29 16 4 C -0.13 -1.16 10.03 -39.64 -0.40 -1.56 16 5 C -0.09 -1.00 7.65 -39.19 -0.30 -1.30 16 6 C -0.12 -1.62 4.71 -104.97 -0.49 -2.12 16 7 C 0.56 9.45 6.66 -12.33 -0.08 9.37 16 8 O -0.53 -10.89 14.29 5.32 0.08 -10.81 16 9 N -0.60 -9.81 2.99 -173.67 -0.52 -10.33 16 10 C 0.11 1.39 5.35 -3.67 -0.02 1.37 16 11 C -0.12 -1.75 5.82 -26.65 -0.16 -1.91 16 12 C 0.08 1.42 2.50 -26.63 -0.07 1.35 16 13 H 0.05 0.95 8.13 -51.93 -0.42 0.53 16 14 O -0.39 -7.70 10.49 -35.23 -0.37 -8.07 16 15 C 0.04 0.76 6.95 37.26 0.26 1.02 16 16 C 0.14 3.45 5.37 -3.48 -0.02 3.43 16 17 N -0.59 -14.61 3.03 -164.35 -0.50 -15.11 16 18 C -0.26 -6.96 8.79 -15.06 -0.13 -7.09 16 19 H 0.07 1.82 6.35 -52.48 -0.33 1.48 16 20 C 0.01 0.28 5.05 -17.43 -0.09 0.19 16 21 N -0.90 -25.86 11.20 55.49 0.62 -25.24 16 22 Si 0.90 21.59 29.57 -169.99 -5.03 16.57 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 C 0.14 2.94 2.99 -67.53 -0.20 2.74 16 27 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 28 C 0.13 2.47 4.55 -3.61 -0.02 2.46 16 29 C -0.03 -0.43 5.91 -104.23 -0.62 -1.05 16 30 C -0.14 -1.76 9.20 36.01 0.33 -1.43 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 33 H 0.07 0.55 5.90 -51.93 -0.31 0.24 16 34 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.13 1.24 7.51 -52.49 -0.39 0.85 16 37 H 0.09 0.99 5.26 -51.93 -0.27 0.71 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.09 2.37 6.39 -51.93 -0.33 2.04 16 45 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 46 H 0.07 1.42 7.33 -51.93 -0.38 1.03 16 47 H 0.11 2.41 6.82 -51.93 -0.35 2.05 16 48 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.07 0.73 5.82 -51.93 -0.30 0.43 16 50 H 0.09 1.47 5.70 -51.92 -0.30 1.17 16 LS Contribution 380.60 15.07 5.74 5.74 Total: -1.00 -31.87 380.60 -10.23 -42.10 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -7.60 Total: 3.10 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -2.65 Total: 2.07 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.40 Total: -50.68 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.29 Total: -18.88 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.87 -10.23 -42.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074394159.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.425 kcal (2) G-P(sol) polarization free energy of solvation -31.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds